Wall clock time and date at job start Sat Apr 11 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34715 * 116.99648 * 2 1 4 4 O 1.21467 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.47726 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.39653 * 120.14716 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.84731 * 179.97438 * 6 5 3 8 8 C 1.50702 * 119.92680 * 179.97438 * 7 6 5 9 9 C 1.38390 * 120.14953 * 0.25024 * 7 6 5 10 10 C 1.50703 * 119.84832 * 179.74801 * 9 7 6 11 11 C 1.38347 * 120.30208 * 359.49351 * 9 7 6 12 12 S 1.76198 * 119.92293 * 180.25527 * 11 9 7 13 13 O 1.42098 * 106.40013 * 176.66312 * 12 11 9 14 14 O 1.42100 * 106.40401 * 309.58108 * 12 11 9 15 15 N 1.65599 * 107.22174 * 63.12201 * 12 11 9 16 16 C 1.46501 * 119.99607 * 65.53045 * 15 12 11 17 17 H 1.08999 * 109.47573 * 334.92352 * 16 15 12 18 18 C 1.53008 * 109.46837 * 94.91977 * 16 15 12 19 19 C 1.50700 * 109.47000 * 214.91535 * 16 15 12 20 20 H 1.08003 * 120.00412 * 0.02562 * 19 16 15 21 21 C 1.37880 * 119.99830 * 180.02562 * 19 16 15 22 22 N 1.31509 * 120.00078 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 119.99827 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47014 * 90.00476 * 23 21 19 25 25 H 1.48502 * 109.47022 * 210.00301 * 23 21 19 26 26 H 1.48497 * 109.47303 * 330.00332 * 23 21 19 27 27 C 1.37962 * 120.14820 * 0.50937 * 11 9 7 28 28 H 1.09004 * 109.47133 * 60.00940 * 1 2 3 29 29 H 1.09003 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47170 * 300.00239 * 1 2 3 31 31 H 1.08000 * 120.07760 * 359.95810 * 6 5 3 32 32 H 1.09002 * 109.47126 * 89.99309 * 8 7 6 33 33 H 1.09007 * 109.46549 * 329.99981 * 8 7 6 34 34 H 1.08996 * 109.47401 * 209.99920 * 8 7 6 35 35 H 1.08990 * 109.47238 * 95.52585 * 10 9 7 36 36 H 1.08997 * 109.46942 * 215.52973 * 10 9 7 37 37 H 1.09001 * 109.47001 * 335.52561 * 10 9 7 38 38 H 0.96995 * 119.99846 * 245.54075 * 15 12 11 39 39 H 1.08997 * 109.46680 * 179.97438 * 18 16 15 40 40 H 1.08992 * 109.46837 * 299.99878 * 18 16 15 41 41 H 1.08999 * 109.46733 * 59.99860 * 18 16 15 42 42 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.07422 * 179.76636 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2778 -0.0006 6 6 4.3025 0.1086 -0.0006 7 6 5.6794 0.1881 -0.0016 8 6 6.5053 -1.0724 -0.0011 9 6 6.3043 1.4229 0.0025 10 6 7.8093 1.5018 0.0071 11 6 5.5538 2.5851 -0.0028 12 16 6.3599 4.1519 -0.0042 13 8 5.3336 5.1310 -0.0893 14 8 7.3125 4.1140 1.0495 15 7 7.2245 4.2571 -1.4127 16 6 6.5259 4.2947 -2.6999 17 1 5.5525 3.8148 -2.5992 18 6 6.3349 5.7494 -3.1341 19 6 7.3414 3.5643 -3.7355 20 1 8.2855 3.1164 -3.4621 21 6 6.8824 3.4677 -5.0320 22 7 5.7331 4.0134 -5.3650 23 14 7.8929 2.5616 -6.3155 24 1 7.5011 1.1293 -6.3334 25 1 7.6457 3.1592 -7.6524 26 1 9.3352 2.6761 -5.9813 27 6 4.1757 2.5200 -0.0017 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.8160 -0.8556 0.0005 32 1 6.7035 -1.3774 -1.0286 33 1 5.9602 -1.8636 0.5140 34 1 7.4492 -0.8882 0.5119 35 1 8.1699 1.6216 -1.0145 36 1 8.1265 2.3549 0.6068 37 1 8.2198 0.5860 0.4323 38 1 8.1934 4.2938 -1.3854 39 1 5.8156 5.7773 -4.0920 40 1 5.7452 6.2776 -2.3851 41 1 7.3084 6.2292 -3.2349 42 1 5.4104 3.9457 -6.2772 43 1 3.5910 3.4281 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267042167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:08 Heat of formation + Delta-G solvation = -160.392443 kcal Electronic energy + Delta-G solvation = -28680.533227 eV Core-core repulsion = 24623.983850 eV Total energy + Delta-G solvation = -4056.549377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81997 -40.43419 -38.44883 -37.65327 -37.30900 -36.99144 -34.69522 -34.11677 -33.66035 -30.21588 -29.71014 -28.26837 -27.67487 -27.22240 -24.14952 -24.07448 -22.87235 -21.39937 -20.51203 -19.42203 -19.03206 -18.41249 -17.91321 -17.51609 -17.29039 -17.20958 -16.81313 -16.58279 -16.08814 -15.49544 -15.25725 -14.86153 -14.55978 -14.45870 -14.41707 -14.16881 -13.84447 -13.74223 -13.55703 -13.40280 -13.31330 -13.18810 -13.10637 -13.00946 -12.96880 -12.81181 -12.70189 -12.39320 -12.31406 -12.21286 -11.98792 -11.91456 -11.82837 -11.65585 -11.11283 -10.58524 -10.46898 -10.14288 -9.83531 -8.11005 -6.26299 -0.67708 -0.54525 -0.21962 1.19936 1.47324 1.49662 1.50536 1.58871 2.03604 2.31767 2.47472 2.70171 3.19508 3.33866 3.44659 3.59908 3.68776 3.86066 4.05630 4.17408 4.27218 4.29198 4.46003 4.47346 4.52358 4.64866 4.65375 4.70579 4.80126 4.90166 4.90432 5.01476 5.10253 5.12486 5.14114 5.15318 5.22835 5.33664 5.59761 5.67828 5.73285 6.03495 6.08507 6.43104 6.50307 6.85544 7.44033 8.94697 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004625 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.811053 B = 6052.936953 C = 6614.878137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.514 3.486 4 O -0.537 6.537 5 C -0.169 4.169 6 C -0.001 4.001 7 C -0.120 4.120 8 C -0.115 4.115 9 C 0.054 3.946 10 C -0.185 4.185 11 C -0.693 4.693 12 S 2.705 3.295 13 O -0.995 6.995 14 O -0.976 6.976 15 N -1.090 6.090 16 C 0.282 3.718 17 H 0.014 0.986 18 C -0.154 4.154 19 C -0.531 4.531 20 H 0.080 0.920 21 C 0.016 3.984 22 N -0.919 5.919 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.260 1.260 27 C 0.018 3.982 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.065 0.935 31 H 0.178 0.822 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.421 0.579 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 -14.448 10.596 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.361 3.639 4 O -0.428 6.428 5 C -0.171 4.171 6 C -0.019 4.019 7 C -0.121 4.121 8 C -0.171 4.171 9 C 0.053 3.947 10 C -0.240 4.240 11 C -0.780 4.780 12 S 2.795 3.205 13 O -0.986 6.986 14 O -0.966 6.966 15 N -0.853 5.853 16 C 0.177 3.823 17 H 0.031 0.969 18 C -0.214 4.214 19 C -0.570 4.570 20 H 0.098 0.902 21 C -0.184 4.184 22 N -0.558 5.558 23 Si 0.788 3.212 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.184 1.184 27 C -0.002 4.002 28 H 0.077 0.923 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.195 0.805 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.258 0.742 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.372 -13.517 11.101 17.545 hybrid contribution -0.310 -0.178 -1.238 1.289 sum -1.683 -13.695 9.863 16.961 Atomic orbital electron populations 1.23669 0.73877 1.06308 1.02677 1.86502 1.25538 1.30656 1.83800 1.21161 0.88937 0.81879 0.71965 1.90840 1.67320 1.37268 1.47364 1.19156 0.89590 0.95195 1.13136 1.21918 0.93355 0.98234 0.88383 1.20330 0.94053 0.96116 1.01565 1.21014 0.99840 0.92073 1.04137 1.20048 0.97312 0.91283 0.86054 1.21900 0.88625 1.07816 1.05675 1.30683 1.04180 1.22141 1.21001 1.01271 0.72944 0.73680 0.72561 1.93520 1.60192 1.57961 1.86890 1.93484 1.61212 1.87455 1.54482 1.55258 1.18934 1.90134 1.20928 1.18222 0.91234 0.93384 0.79509 0.96856 1.22162 1.00025 0.97691 1.01530 1.21585 1.06897 1.34662 0.93866 0.90238 1.25731 0.95984 0.96252 1.00476 1.70034 1.20970 1.45140 1.19657 0.85486 0.79482 0.78375 0.77854 1.20224 1.21711 1.18418 1.20930 0.92820 0.98291 0.88153 0.92257 0.83880 0.91617 0.80486 0.89729 0.88747 0.89068 0.87800 0.88667 0.85844 0.74229 0.91197 0.95718 0.93757 0.92757 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.41 9.82 -56.25 -0.55 -8.96 16 3 C 0.51 16.43 7.90 70.33 0.56 16.99 16 4 O -0.54 -20.58 16.14 19.94 0.32 -20.26 16 5 C -0.17 -5.43 5.87 -20.10 -0.12 -5.55 16 6 C 0.00 -0.03 9.27 22.54 0.21 0.18 16 7 C -0.12 -2.87 5.87 -19.90 -0.12 -2.99 16 8 C -0.11 -1.66 9.59 71.24 0.68 -0.98 16 9 C 0.05 1.61 5.88 -19.80 -0.12 1.49 16 10 C -0.18 -4.47 8.84 71.24 0.63 -3.84 16 11 C -0.69 -24.98 5.76 22.23 0.13 -24.85 16 12 S 2.70 105.01 4.95 -56.49 -0.28 104.73 16 13 O -1.00 -45.71 16.21 -128.00 -2.07 -47.78 16 14 O -0.98 -36.79 15.50 -128.00 -1.98 -38.77 16 15 N -1.09 -42.50 5.18 -172.51 -0.89 -43.39 16 16 C 0.28 13.50 2.76 44.25 0.12 13.63 16 17 H 0.01 0.73 7.88 -2.39 -0.02 0.71 16 18 C -0.15 -7.60 9.29 71.98 0.67 -6.93 16 19 C -0.53 -26.05 8.76 25.60 0.22 -25.82 16 20 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 21 C 0.02 0.79 5.30 84.66 0.45 1.24 16 22 N -0.92 -50.69 11.32 21.45 0.24 -50.45 16 23 Si 0.96 40.12 29.54 68.60 2.03 42.14 16 24 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 27 C 0.02 0.67 9.09 22.53 0.20 0.87 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.18 3.01 7.61 -2.91 -0.02 2.99 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 0.92 8.08 -2.38 -0.02 0.91 16 34 H 0.09 1.06 5.86 -2.39 -0.01 1.05 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.09 2.52 5.16 -2.39 -0.01 2.51 16 37 H 0.12 2.01 5.72 -2.39 -0.01 2.00 16 38 H 0.42 14.06 8.83 -96.75 -0.85 13.21 16 39 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 40 H 0.02 1.17 7.63 -2.39 -0.02 1.15 16 41 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.13 5.46 6.92 -2.91 -0.02 5.44 16 Total: -1.00 -71.55 369.46 1.73 -69.81 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.20 Total: 27.83 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.72 Total: -34.90 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -0.65 Total: -93.84 kcal Atomic # 8 Polarization: -111.48 SS G_CDS: -4.29 Total: -115.77 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 105.01 SS G_CDS: -0.28 Total: 104.73 kcal Total: -71.55 1.73 -69.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267042167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.579 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds