Wall clock time and date at job start Sat Apr 11 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99534 * 2 1 4 4 H 1.48505 * 109.47380 * 240.00314 * 3 2 1 5 5 H 1.48497 * 109.47701 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46931 * 120.00910 * 3 2 1 7 7 C 1.37869 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00151 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00092 * 85.38891 * 10 9 7 12 12 C 1.50694 * 109.46966 * 90.00444 * 11 10 9 13 13 C 1.34517 * 125.79440 * 89.71776 * 12 11 10 14 14 C 1.41375 * 106.84468 * 179.88854 * 13 12 11 15 15 C 1.34513 * 106.84306 * 0.36886 * 14 13 12 16 16 O 1.34306 * 108.41816 * 359.77633 * 15 14 13 17 17 C 1.34777 * 120.00126 * 265.66774 * 10 9 7 18 18 O 1.21284 * 120.00134 * 185.04287 * 17 10 9 19 19 C 1.50702 * 119.99609 * 5.04375 * 17 10 9 20 20 H 1.08995 * 109.54725 * 336.36131 * 19 17 10 21 21 C 1.53037 * 109.54680 * 216.17043 * 19 17 10 22 22 C 1.52589 * 109.98401 * 176.49625 * 21 19 17 23 23 C 1.52583 * 110.64442 * 69.98881 * 22 21 19 24 24 C 1.53044 * 109.98156 * 290.01181 * 23 22 21 25 25 S 1.81667 * 109.55144 * 96.55506 * 19 17 10 26 26 O 1.42100 * 108.66334 * 288.48152 * 25 19 17 27 27 O 1.42105 * 108.66491 * 59.82378 * 25 19 17 28 28 H 0.97004 * 120.00601 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47367 * 59.99373 * 9 7 2 30 30 H 1.09004 * 109.46643 * 299.99714 * 9 7 2 31 31 H 1.09003 * 109.46732 * 209.99933 * 11 10 9 32 32 H 1.08999 * 109.47269 * 330.00060 * 11 10 9 33 33 H 1.08007 * 126.57498 * 0.02562 * 13 12 11 34 34 H 1.08005 * 126.58310 * 180.12039 * 14 13 12 35 35 H 1.07994 * 125.79540 * 179.79190 * 15 14 13 36 36 H 1.08999 * 109.38608 * 296.65019 * 21 19 17 37 37 H 1.09000 * 109.38648 * 56.33537 * 21 19 17 38 38 H 1.09002 * 109.24083 * 190.28414 * 22 21 19 39 39 H 1.08994 * 109.24444 * 309.68231 * 22 21 19 40 40 H 1.09004 * 109.38711 * 50.16725 * 23 22 21 41 41 H 1.09004 * 109.38958 * 169.85458 * 23 22 21 42 42 H 1.09000 * 109.54519 * 183.50432 * 24 23 22 43 43 H 1.09004 * 109.54638 * 303.69202 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.7566 -4.1031 1.2641 12 6 1.8700 -5.1916 1.8119 13 6 1.9846 -6.5060 1.5498 14 6 0.9566 -7.1582 2.2685 15 6 0.2700 -6.2026 2.9203 16 8 0.8277 -5.0134 2.6400 17 6 2.5739 -4.1821 -1.1644 18 8 3.2897 -5.1612 -1.1594 19 6 2.0993 -3.6023 -2.4719 20 1 1.1820 -3.0367 -2.3084 21 6 1.8328 -4.7338 -3.4671 22 6 1.2691 -4.1643 -4.7657 23 6 2.3402 -3.3813 -5.5193 24 6 2.6674 -2.0879 -4.7694 25 16 3.3779 -2.5041 -3.1498 26 8 3.4311 -1.3252 -2.3582 27 8 4.5637 -3.2596 -3.3557 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5571 0.8898 31 1 3.7568 -4.5010 1.0928 32 1 2.8095 -3.2829 1.9800 33 1 2.7221 -6.9737 0.9142 34 1 0.7577 -8.2196 2.2871 35 1 -0.5845 -6.3642 3.5606 36 1 2.7650 -5.2583 -3.6768 37 1 1.1152 -5.4325 -3.0370 38 1 0.9143 -4.9823 -5.3926 39 1 0.4351 -3.5015 -4.5351 40 1 3.2412 -3.9890 -5.6027 41 1 1.9758 -3.1385 -6.5175 42 1 3.3868 -1.5050 -5.3446 43 1 1.7558 -1.5069 -4.6295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273167624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:22 Heat of formation + Delta-G solvation = -81.105394 kcal Electronic energy + Delta-G solvation = -29536.402114 eV Core-core repulsion = 25483.290881 eV Total energy + Delta-G solvation = -4053.111233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21120 -39.52115 -37.07140 -36.23261 -35.47688 -35.29292 -32.89121 -32.46796 -31.95729 -30.30345 -27.94175 -27.27905 -25.58307 -23.72425 -22.83200 -21.37038 -20.91268 -20.44793 -19.17949 -18.24986 -17.32204 -16.86714 -16.56958 -16.32355 -15.93320 -15.87793 -15.29384 -15.10783 -14.64045 -14.44452 -14.32704 -13.83828 -13.61807 -13.54080 -12.96812 -12.74012 -12.54008 -12.47172 -12.37251 -12.26306 -11.87007 -11.63402 -11.52383 -11.47312 -11.43882 -11.28425 -11.08870 -10.92512 -10.84831 -10.60849 -10.29306 -10.09251 -9.95634 -9.67764 -9.59089 -9.32290 -8.43895 -8.22799 -7.96927 -6.08081 -4.11270 0.29570 1.98541 2.85251 2.95923 3.06550 3.38390 3.40074 3.41415 3.53810 3.62557 4.11636 4.21396 4.49943 4.59031 4.66863 4.75902 4.93457 5.02511 5.04620 5.11453 5.29099 5.31906 5.34900 5.40781 5.53685 5.60616 5.71729 5.76000 5.84704 5.93378 6.00357 6.04313 6.08342 6.23876 6.27556 6.39696 6.54981 6.81021 7.06736 7.32364 7.48674 7.89307 8.02935 8.08815 8.58910 8.98381 9.57440 10.99492 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008962 B = 0.006231 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.691799 B = 4492.433190 C = 6636.586135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.074 0.926 9 C 0.228 3.772 10 N -0.582 5.582 11 C 0.195 3.805 12 C -0.018 4.018 13 C -0.197 4.197 14 C -0.220 4.220 15 C -0.047 4.047 16 O -0.168 6.168 17 C 0.536 3.464 18 O -0.541 6.541 19 C -0.596 4.596 20 H 0.167 0.833 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.109 4.109 24 C -0.613 4.613 25 S 2.419 3.581 26 O -0.881 6.881 27 O -0.933 6.933 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.197 0.803 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -8.903 -5.936 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.722 3.278 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.092 0.908 9 C 0.109 3.891 10 N -0.312 5.312 11 C 0.072 3.928 12 C -0.069 4.069 13 C -0.217 4.217 14 C -0.240 4.240 15 C -0.115 4.115 16 O -0.063 6.063 17 C 0.321 3.679 18 O -0.420 6.420 19 C -0.705 4.705 20 H 0.184 0.816 21 C -0.130 4.130 22 C -0.178 4.178 23 C -0.147 4.147 24 C -0.741 4.741 25 S 2.596 3.404 26 O -0.878 6.878 27 O -0.931 6.931 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.214 0.786 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.149 0.851 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.500 -8.704 -5.441 10.277 hybrid contribution -0.759 0.617 -0.350 1.039 sum -0.259 -8.087 -5.791 9.950 Atomic orbital electron populations 1.69934 1.06069 1.27271 1.50888 1.24800 0.94611 0.99281 0.94484 0.86586 0.79674 0.82176 0.79408 1.19016 1.21757 1.20357 1.21442 0.94223 0.89438 1.50605 0.90807 1.19739 0.87552 0.82795 0.99046 1.48303 1.44838 1.34431 1.03648 1.19772 0.93556 0.93627 0.85835 1.23137 0.91255 0.96706 0.95822 1.21688 1.02487 0.93108 1.04377 1.21794 0.99110 1.00256 1.02803 1.23971 1.01010 0.82295 1.04269 1.84088 1.37250 1.32826 1.52183 1.19104 0.80931 0.83731 0.84161 1.90656 1.38482 1.25725 1.87157 1.30449 1.21728 1.14310 1.04010 0.81603 1.21174 1.03909 0.95626 0.92251 1.21726 0.98831 1.00941 0.96255 1.21279 1.00448 0.93041 0.99973 1.30367 1.14181 1.07137 1.22434 1.08470 0.76817 0.77023 0.78110 1.93813 1.85042 1.44164 1.64733 1.93562 1.41003 1.72851 1.85641 0.92741 0.94427 0.93826 0.87491 0.87818 0.83360 0.83956 0.78585 0.89203 0.89782 0.89729 0.90411 0.89922 0.89812 0.85120 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.29 55.43 0.74 -23.94 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.36 7.48 -34.44 -0.26 -13.62 16 8 H 0.07 1.97 7.05 -52.49 -0.37 1.60 16 9 C 0.23 5.30 4.98 -5.20 -0.03 5.27 16 10 N -0.58 -12.15 2.44 -176.43 -0.43 -12.58 16 11 C 0.20 3.67 5.92 -5.19 -0.03 3.64 16 12 C -0.02 -0.32 6.90 -35.63 -0.25 -0.56 16 13 C -0.20 -3.29 10.81 -39.70 -0.43 -3.72 16 14 C -0.22 -3.17 10.91 -39.71 -0.43 -3.60 16 15 C -0.05 -0.67 12.09 29.42 0.36 -0.31 16 16 O -0.17 -3.00 10.65 5.69 0.06 -2.94 16 17 C 0.54 10.86 6.64 -10.98 -0.07 10.79 16 18 O -0.54 -11.59 16.00 5.55 0.09 -11.50 16 19 C -0.60 -10.25 2.40 -27.86 -0.07 -10.32 16 20 H 0.17 2.79 5.55 -51.93 -0.29 2.51 16 21 C -0.09 -1.25 4.64 -26.92 -0.12 -1.37 16 22 C -0.14 -1.45 5.63 -27.16 -0.15 -1.60 16 23 C -0.11 -1.12 5.73 -26.92 -0.15 -1.28 16 24 C -0.61 -7.49 6.34 37.18 0.24 -7.25 16 25 S 2.42 42.60 4.67 -107.50 -0.50 42.09 16 26 O -0.88 -19.14 15.31 -57.81 -0.89 -20.02 16 27 O -0.93 -18.49 17.94 -57.81 -1.04 -19.52 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.88 5.66 -51.93 -0.29 0.58 16 30 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 31 H 0.11 1.89 7.49 -51.93 -0.39 1.50 16 32 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 33 H 0.15 2.46 8.06 -52.48 -0.42 2.04 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.20 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.09 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -33.85 366.19 -8.91 -42.77 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.94 Total: 5.77 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.50 Total: -22.17 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.31 Total: -36.52 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.77 Total: -53.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 42.60 SS G_CDS: -0.50 Total: 42.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.85 -8.91 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273167624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.336 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds