Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00660 * 2 1 4 4 H 1.48499 * 109.47037 * 240.00142 * 3 2 1 5 5 H 1.48503 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47308 * 119.99447 * 3 2 1 7 7 C 1.37883 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47123 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.47191 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54544 * 68.37354 * 12 11 10 14 14 O 1.42099 * 110.53863 * 291.62230 * 12 11 10 15 15 N 1.65596 * 104.44866 * 180.02562 * 12 11 10 16 16 C 1.46500 * 120.00101 * 64.99958 * 15 12 11 17 17 C 1.52998 * 109.46970 * 164.99992 * 16 15 12 18 18 C 1.50708 * 109.47208 * 179.97438 * 17 16 15 19 19 C 1.38372 * 119.84796 * 270.27845 * 18 17 16 20 20 C 1.37938 * 120.14963 * 180.28044 * 19 18 17 21 21 C 1.39633 * 119.84852 * 359.44003 * 20 19 18 22 22 C 1.47723 * 120.15316 * 180.30600 * 21 20 19 23 23 O 1.21471 * 119.99606 * 359.97438 * 22 21 20 24 24 O 1.34709 * 120.00179 * 179.97438 * 22 21 20 25 25 C 1.39630 * 119.69783 * 0.27990 * 21 20 19 26 26 C 1.37948 * 119.84903 * 359.97438 * 25 21 20 27 27 H 0.97006 * 119.99539 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99388 * 9 7 2 29 29 H 1.09004 * 109.47027 * 300.00157 * 9 7 2 30 30 H 1.09000 * 109.47370 * 60.00183 * 10 9 7 31 31 H 1.08998 * 109.47011 * 299.99755 * 10 9 7 32 32 H 1.08998 * 109.47337 * 59.99962 * 11 10 9 33 33 H 1.08998 * 109.47001 * 299.99790 * 11 10 9 34 34 H 0.97001 * 120.00091 * 244.99951 * 15 12 11 35 35 H 1.09002 * 109.47242 * 45.00008 * 16 15 12 36 36 H 1.09000 * 109.46978 * 284.99385 * 16 15 12 37 37 H 1.09000 * 109.47854 * 60.00040 * 17 16 15 38 38 H 1.08996 * 109.47465 * 299.99708 * 17 16 15 39 39 H 1.07998 * 119.92432 * 0.02562 * 19 18 17 40 40 H 1.08002 * 120.07979 * 179.72201 * 20 19 18 41 41 H 0.96694 * 117.00098 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.07581 * 180.02562 * 25 21 20 43 43 H 1.07997 * 119.92171 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 16 2.6587 -6.3660 0.0019 13 8 3.3554 -6.4258 1.2389 14 8 3.3554 -6.4270 -1.2350 15 7 1.7082 -7.7221 0.0019 16 6 0.8492 -8.0144 -1.1482 17 6 0.3756 -9.4674 -1.0747 18 6 -0.5087 -9.7680 -2.2575 19 6 -1.8730 -9.5548 -2.1692 20 6 -2.6889 -9.8333 -3.2460 21 6 -2.1336 -10.3204 -4.4310 22 6 -3.0003 -10.6145 -5.5906 23 8 -4.1989 -10.4331 -5.5143 24 8 -2.4613 -11.0838 -6.7324 25 6 -0.7554 -10.5277 -4.5151 26 6 0.0483 -10.2500 -3.4288 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6045 0.8905 31 1 2.8717 -3.6044 -0.8895 32 1 0.8530 -5.0451 -0.8885 33 1 0.8536 -5.0446 0.8914 34 1 1.7203 -8.3228 0.7634 35 1 1.4111 -7.8616 -2.0697 36 1 -0.0146 -7.3497 -1.1348 37 1 -0.1864 -9.6203 -0.1533 38 1 1.2392 -10.1322 -1.0881 39 1 -2.3006 -9.1734 -1.2537 40 1 -3.7542 -9.6707 -3.1743 41 1 -3.0684 -11.2619 -7.4637 42 1 -0.3194 -10.9039 -5.4288 43 1 1.1144 -10.4103 -3.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274911795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = -162.401716 kcal Electronic energy + Delta-G solvation = -25870.664295 eV Core-core repulsion = 21814.027789 eV Total energy + Delta-G solvation = -4056.636506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84239 -39.41351 -36.98277 -36.54583 -36.22542 -35.76487 -34.69018 -32.95497 -32.20252 -31.49136 -28.95430 -27.82977 -24.96410 -23.75120 -23.28261 -22.73919 -21.17472 -20.66425 -19.26940 -18.58430 -17.91106 -17.49649 -16.72022 -16.50272 -16.03615 -15.96305 -15.74945 -15.64626 -15.11089 -14.91919 -14.57271 -14.44851 -14.15733 -13.91984 -13.60011 -13.36047 -12.63054 -12.61433 -12.33313 -12.22178 -12.09849 -11.96605 -11.95606 -11.82796 -11.80038 -11.59286 -11.44083 -11.23773 -11.03131 -10.90752 -10.89020 -10.46125 -9.96713 -9.78836 -9.46668 -9.37636 -9.30438 -9.10884 -8.41633 -6.06767 -4.09945 0.18265 0.43774 0.90695 2.09084 2.57078 2.78657 3.29568 3.31456 3.35424 3.38482 3.90308 4.21279 4.27093 4.38368 4.41623 4.49265 4.56137 4.58753 4.78781 4.88363 5.04002 5.06897 5.11009 5.16133 5.29516 5.33253 5.40364 5.46000 5.56716 5.73669 5.78226 5.86829 5.88385 6.02615 6.08179 6.24523 6.36457 6.42563 6.81101 6.85810 7.44819 7.55116 7.65090 7.91006 8.31451 8.96060 9.54781 11.04410 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.002111 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.223178 B =13262.444677 C =15040.382454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.602 3.398 13 O -0.963 6.963 14 O -0.962 6.962 15 N -1.126 6.126 16 C 0.118 3.882 17 C -0.093 4.093 18 C -0.044 4.044 19 C -0.126 4.126 20 C -0.050 4.050 21 C -0.135 4.135 22 C 0.528 3.472 23 O -0.514 6.514 24 O -0.513 6.513 25 C -0.057 4.057 26 C -0.128 4.128 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.415 0.585 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.415 0.585 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -26.443 -7.098 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.698 3.302 13 O -0.953 6.953 14 O -0.952 6.952 15 N -0.884 5.884 16 C -0.009 4.009 17 C -0.131 4.131 18 C -0.045 4.045 19 C -0.143 4.143 20 C -0.069 4.069 21 C -0.136 4.136 22 C 0.372 3.628 23 O -0.404 6.404 24 O -0.324 6.324 25 C -0.076 4.076 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.249 0.751 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.274 0.726 42 H 0.157 0.843 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.557 -26.099 -6.926 27.235 hybrid contribution -0.839 0.781 -0.226 1.168 sum -4.397 -25.318 -7.152 26.674 Atomic orbital electron populations 1.69946 1.06094 1.26908 1.50480 1.25022 0.94894 0.99378 0.95082 0.86608 0.79569 0.82806 0.78765 1.20114 1.21248 1.20115 1.21215 0.93218 0.90900 1.51222 0.92413 1.19057 0.93525 0.90458 0.97714 1.21503 0.99393 0.91662 1.01994 1.30539 1.16371 1.15901 1.11226 1.05267 0.75565 0.75189 0.74184 1.93582 1.70678 1.85877 1.45179 1.93567 1.70238 1.85693 1.45681 1.55730 1.62444 1.42727 1.27510 1.21284 0.94364 0.96114 0.89101 1.20881 0.99316 0.96581 0.96351 1.20100 0.94053 0.95248 0.95065 1.21091 0.92839 1.01155 0.99263 1.21287 1.00942 0.93789 0.90846 1.19058 0.93452 1.08335 0.92747 1.20935 0.86351 0.73029 0.82471 1.90902 1.16500 1.49697 1.83307 1.84550 1.46097 1.77688 1.24112 1.21476 0.91954 0.95142 0.98984 1.21149 1.00613 1.00385 0.92440 0.92826 0.96140 0.96134 0.91553 0.91538 0.85533 0.85268 0.75145 0.89749 0.91202 0.89536 0.89446 0.84544 0.84321 0.72611 0.84286 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 10 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -8.84 6.07 37.16 0.23 -8.62 16 12 S 2.60 35.23 5.46 -107.50 -0.59 34.64 16 13 O -0.96 -15.99 18.08 -57.54 -1.04 -17.03 16 14 O -0.96 -15.94 17.49 -57.54 -1.01 -16.95 16 15 N -1.13 -10.15 5.88 -10.61 -0.06 -10.22 16 16 C 0.12 0.91 6.11 -4.04 -0.02 0.89 16 17 C -0.09 -0.52 5.48 -27.88 -0.15 -0.67 16 18 C -0.04 -0.29 5.14 -104.52 -0.54 -0.82 16 19 C -0.13 -0.85 9.68 -39.64 -0.38 -1.23 16 20 C -0.05 -0.40 9.60 -39.17 -0.38 -0.78 16 21 C -0.13 -1.13 5.87 -104.98 -0.62 -1.74 16 22 C 0.53 4.70 8.27 34.61 0.29 4.98 16 23 O -0.51 -6.06 17.13 -19.24 -0.33 -6.39 16 24 O -0.51 -3.08 12.68 -40.52 -0.51 -3.59 16 25 C -0.06 -0.40 9.62 -39.17 -0.38 -0.78 16 26 C -0.13 -0.84 9.68 -39.64 -0.38 -1.22 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.41 2.87 8.62 -34.47 -0.30 2.58 16 35 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.14 1.06 7.65 -52.49 -0.40 0.66 16 41 H 0.42 0.72 9.11 45.56 0.42 1.13 16 42 H 0.14 0.78 7.61 -52.48 -0.40 0.38 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -38.28 387.11 -10.29 -48.57 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.27 Total: -0.49 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -3.03 Total: -25.12 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.67 Total: -35.96 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -2.89 Total: -43.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 35.23 SS G_CDS: -0.59 Total: 34.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.28 -10.29 -48.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274911795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.832 kcal (2) G-P(sol) polarization free energy of solvation -38.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds