Wall clock time and date at job start Sat Apr 11 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00660 * 2 1 4 4 H 1.48499 * 109.47037 * 240.00142 * 3 2 1 5 5 H 1.48503 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47308 * 119.99447 * 3 2 1 7 7 C 1.37883 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47123 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.47191 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54544 * 68.37354 * 12 11 10 14 14 O 1.42099 * 110.53863 * 291.62230 * 12 11 10 15 15 N 1.65596 * 104.44866 * 180.02562 * 12 11 10 16 16 C 1.46500 * 120.00101 * 64.99958 * 15 12 11 17 17 C 1.52998 * 109.46970 * 164.99992 * 16 15 12 18 18 C 1.50708 * 109.47208 * 179.97438 * 17 16 15 19 19 C 1.38372 * 119.84796 * 270.27845 * 18 17 16 20 20 C 1.37938 * 120.14963 * 180.28044 * 19 18 17 21 21 C 1.39633 * 119.84852 * 359.44003 * 20 19 18 22 22 C 1.47723 * 120.15316 * 180.30600 * 21 20 19 23 23 O 1.21471 * 119.99606 * 359.97438 * 22 21 20 24 24 O 1.34709 * 120.00179 * 179.97438 * 22 21 20 25 25 C 1.39630 * 119.69783 * 0.27990 * 21 20 19 26 26 C 1.37948 * 119.84903 * 359.97438 * 25 21 20 27 27 H 0.97006 * 119.99539 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47436 * 59.99388 * 9 7 2 29 29 H 1.09004 * 109.47027 * 300.00157 * 9 7 2 30 30 H 1.09000 * 109.47370 * 60.00183 * 10 9 7 31 31 H 1.08998 * 109.47011 * 299.99755 * 10 9 7 32 32 H 1.08998 * 109.47337 * 59.99962 * 11 10 9 33 33 H 1.08998 * 109.47001 * 299.99790 * 11 10 9 34 34 H 0.97001 * 120.00091 * 244.99951 * 15 12 11 35 35 H 1.09002 * 109.47242 * 45.00008 * 16 15 12 36 36 H 1.09000 * 109.46978 * 284.99385 * 16 15 12 37 37 H 1.09000 * 109.47854 * 60.00040 * 17 16 15 38 38 H 1.08996 * 109.47465 * 299.99708 * 17 16 15 39 39 H 1.07998 * 119.92432 * 0.02562 * 19 18 17 40 40 H 1.08002 * 120.07979 * 179.72201 * 20 19 18 41 41 H 0.96694 * 117.00098 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.07581 * 180.02562 * 25 21 20 43 43 H 1.07997 * 119.92171 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 16 2.6587 -6.3660 0.0019 13 8 3.3554 -6.4258 1.2389 14 8 3.3554 -6.4270 -1.2350 15 7 1.7082 -7.7221 0.0019 16 6 0.8492 -8.0144 -1.1482 17 6 0.3756 -9.4674 -1.0747 18 6 -0.5087 -9.7680 -2.2575 19 6 -1.8730 -9.5548 -2.1692 20 6 -2.6889 -9.8333 -3.2460 21 6 -2.1336 -10.3204 -4.4310 22 6 -3.0003 -10.6145 -5.5906 23 8 -4.1989 -10.4331 -5.5143 24 8 -2.4613 -11.0838 -6.7324 25 6 -0.7554 -10.5277 -4.5151 26 6 0.0483 -10.2500 -3.4288 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6045 0.8905 31 1 2.8717 -3.6044 -0.8895 32 1 0.8530 -5.0451 -0.8885 33 1 0.8536 -5.0446 0.8914 34 1 1.7203 -8.3228 0.7634 35 1 1.4111 -7.8616 -2.0697 36 1 -0.0146 -7.3497 -1.1348 37 1 -0.1864 -9.6203 -0.1533 38 1 1.2392 -10.1322 -1.0881 39 1 -2.3006 -9.1734 -1.2537 40 1 -3.7542 -9.6707 -3.1743 41 1 -3.0684 -11.2619 -7.4637 42 1 -0.3194 -10.9039 -5.4288 43 1 1.1144 -10.4103 -3.4924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274911795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:29 Heat of formation + Delta-G solvation = -190.465881 kcal Electronic energy + Delta-G solvation = -25871.881248 eV Core-core repulsion = 21814.027789 eV Total energy + Delta-G solvation = -4057.853459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45123 -39.96025 -38.16845 -37.17333 -37.06070 -36.83871 -36.44676 -34.15052 -33.57089 -31.99780 -29.64540 -29.53639 -25.61168 -25.58259 -23.80541 -23.30320 -22.41496 -21.67030 -20.32095 -19.17588 -18.72949 -18.54405 -18.36239 -17.48738 -17.13559 -16.69796 -16.51686 -16.46182 -16.33695 -16.05532 -15.51080 -15.50391 -15.05962 -14.47832 -14.44288 -14.19040 -14.05778 -13.91266 -13.50263 -13.43485 -13.17805 -13.09637 -12.95977 -12.78966 -12.71987 -12.64686 -12.58956 -12.52685 -12.34477 -12.13930 -11.91678 -11.72591 -11.70816 -11.37681 -11.09351 -10.56802 -10.34592 -9.97667 -9.86127 -8.22470 -6.33356 -0.70567 -0.36086 0.39710 1.40370 1.42792 1.46953 1.50700 1.84069 2.05843 2.40004 2.74354 2.80785 3.11107 3.28211 3.69141 3.78140 3.83946 3.95993 4.00689 4.05273 4.08126 4.28999 4.39809 4.42078 4.52726 4.60746 4.63429 4.71722 4.87784 4.94043 5.00079 5.08580 5.10042 5.23715 5.25422 5.36591 5.46098 5.52891 5.59306 5.64165 5.80078 5.87275 6.18707 6.20368 6.82444 6.92238 7.35921 8.88734 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.002111 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.223178 B =13262.444677 C =15040.382454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.612 4.612 12 S 2.635 3.365 13 O -0.992 6.992 14 O -0.991 6.991 15 N -1.107 6.107 16 C 0.106 3.894 17 C -0.086 4.086 18 C -0.044 4.044 19 C -0.127 4.127 20 C -0.065 4.065 21 C -0.155 4.155 22 C 0.530 3.470 23 O -0.553 6.553 24 O -0.505 6.505 25 C -0.059 4.059 26 C -0.132 4.132 27 H 0.265 0.735 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.429 0.571 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.433 0.567 42 H 0.151 0.849 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -27.356 -6.870 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.742 4.742 12 S 2.730 3.270 13 O -0.983 6.983 14 O -0.980 6.980 15 N -0.869 5.869 16 C -0.019 4.019 17 C -0.124 4.124 18 C -0.045 4.045 19 C -0.144 4.144 20 C -0.083 4.083 21 C -0.156 4.156 22 C 0.377 3.623 23 O -0.446 6.446 24 O -0.319 6.319 25 C -0.077 4.077 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.295 0.705 42 H 0.169 0.831 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.605 -27.022 -6.708 27.963 hybrid contribution -1.153 0.978 -0.344 1.551 sum -3.758 -26.043 -7.052 27.242 Atomic orbital electron populations 1.70063 1.07628 1.27933 1.51362 1.25938 0.95816 1.03238 0.94622 0.85541 0.78362 0.78219 0.79214 1.19233 1.20703 1.19206 1.21730 0.93752 0.92565 1.51050 0.92142 1.18962 0.94053 0.91892 0.95867 1.21306 0.98656 0.92624 1.02060 1.30522 1.16804 1.13813 1.13092 1.04032 0.75005 0.75231 0.72722 1.93539 1.71849 1.86463 1.46423 1.93532 1.71292 1.86260 1.46950 1.55241 1.62075 1.41012 1.28593 1.21530 0.94355 0.98025 0.88032 1.20863 0.99769 0.95077 0.96735 1.20247 0.94044 0.94823 0.95392 1.21314 0.92983 1.00666 0.99475 1.21389 1.01033 0.94461 0.91429 1.19221 0.94149 1.09398 0.92842 1.21114 0.85870 0.72236 0.83127 1.90880 1.17999 1.51636 1.84052 1.84513 1.46425 1.76888 1.24038 1.21637 0.91392 0.94873 0.99769 1.21424 1.01471 0.99851 0.92210 0.92654 0.97925 0.97913 0.91578 0.91559 0.83798 0.83540 0.73440 0.90481 0.90002 0.87604 0.88333 0.82786 0.84904 0.70540 0.83116 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.11 -4.23 5.16 30.59 0.16 -4.07 16 11 C -0.61 -16.95 6.07 71.98 0.44 -16.52 16 12 S 2.64 66.82 5.46 -56.49 -0.31 66.52 16 13 O -0.99 -31.50 18.08 -127.65 -2.31 -33.80 16 14 O -0.99 -31.43 17.49 -127.65 -2.23 -33.66 16 15 N -1.11 -16.81 5.88 -187.49 -1.10 -17.92 16 16 C 0.11 1.34 6.11 86.38 0.53 1.87 16 17 C -0.09 -0.68 5.48 29.85 0.16 -0.51 16 18 C -0.04 -0.47 5.14 -19.80 -0.10 -0.57 16 19 C -0.13 -1.49 9.68 22.23 0.22 -1.28 16 20 C -0.06 -1.01 9.60 22.54 0.22 -0.79 16 21 C -0.15 -2.53 5.87 -20.10 -0.12 -2.65 16 22 C 0.53 9.48 8.27 70.33 0.58 10.06 16 23 O -0.55 -13.45 17.13 19.93 0.34 -13.11 16 24 O -0.50 -5.69 12.68 -56.19 -0.71 -6.40 16 25 C -0.06 -0.75 9.62 22.54 0.22 -0.53 16 26 C -0.13 -1.44 9.68 22.23 0.22 -1.23 16 27 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.43 4.51 8.62 -96.75 -0.83 3.68 16 35 H 0.08 1.13 7.69 -2.39 -0.02 1.11 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 0.47 8.08 -2.39 -0.02 0.45 16 38 H 0.10 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.13 2.13 7.65 -2.91 -0.02 2.11 16 41 H 0.43 1.15 9.11 -74.06 -0.67 0.48 16 42 H 0.15 1.46 7.61 -2.91 -0.02 1.43 16 43 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -82.95 387.11 -1.12 -84.07 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -0.46 Total: 8.56 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 3.36 Total: -44.96 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -0.82 Total: -73.25 kcal Atomic # 8 Polarization: -82.07 SS G_CDS: -4.91 Total: -86.98 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 66.82 SS G_CDS: -0.31 Total: 66.52 kcal Total: -82.95 -1.12 -84.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274911795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.394 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds