Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99785 * 2 1 4 4 H 1.48503 * 109.47283 * 269.99576 * 3 2 1 5 5 H 1.48500 * 109.47118 * 29.99862 * 3 2 1 6 6 H 1.48502 * 109.47387 * 150.00002 * 3 2 1 7 7 C 1.37874 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00575 * 0.02562 * 7 2 1 9 9 C 1.50711 * 120.00032 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47208 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54357 * 68.37504 * 11 10 9 13 13 O 1.42098 * 110.54230 * 291.62486 * 11 10 9 14 14 N 1.65600 * 104.45127 * 179.97438 * 11 10 9 15 15 C 1.46497 * 119.99558 * 64.99947 * 14 11 10 16 16 H 1.08992 * 109.47461 * 335.00110 * 15 14 11 17 17 C 1.52998 * 109.47124 * 214.99690 * 15 14 11 18 18 C 1.53004 * 109.46794 * 65.00096 * 17 15 14 19 19 C 1.50702 * 109.46940 * 179.97438 * 18 17 15 20 20 C 1.38233 * 120.00130 * 269.72539 * 19 18 17 21 21 C 1.38237 * 120.00312 * 179.76603 * 20 19 18 22 22 C 1.38233 * 119.99354 * 0.51334 * 21 20 19 23 23 C 1.38233 * 120.00389 * 359.74306 * 22 21 20 24 24 C 1.38232 * 119.99942 * 90.00844 * 19 18 17 25 25 C 1.50700 * 109.47128 * 95.00187 * 15 14 11 26 26 O 1.20826 * 120.00162 * 0.27266 * 25 15 14 27 27 O 1.34234 * 120.00068 * 179.97438 * 25 15 14 28 28 H 0.96993 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46442 * 60.00069 * 9 7 2 30 30 H 1.08995 * 109.46790 * 300.00329 * 9 7 2 31 31 H 1.08999 * 109.47336 * 59.99880 * 10 9 7 32 32 H 1.09005 * 109.46861 * 299.99860 * 10 9 7 33 33 H 0.96998 * 120.00174 * 244.99677 * 14 11 10 34 34 H 1.08996 * 109.47229 * 185.00078 * 17 15 14 35 35 H 1.09000 * 109.47665 * 305.00305 * 17 15 14 36 36 H 1.08996 * 109.47218 * 299.99989 * 18 17 15 37 37 H 1.09000 * 109.47072 * 60.00641 * 18 17 15 38 38 H 1.08002 * 120.00009 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.00380 * 180.22792 * 21 20 19 40 40 H 1.08007 * 119.99668 * 179.72457 * 22 21 20 41 41 H 1.08000 * 120.00227 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.00184 * 359.97438 * 24 19 18 43 43 H 0.96706 * 116.99872 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 16 5.8356 -2.6364 0.0025 12 8 6.3333 -2.1465 1.2400 13 8 6.3352 -2.1456 -1.2339 14 7 6.2489 -4.2400 0.0029 15 6 5.9134 -5.0832 -1.1472 16 1 5.0574 -4.6586 -1.6715 17 6 5.5670 -6.4924 -0.6626 18 6 4.2953 -6.4414 0.1866 19 6 3.9537 -7.8296 0.6634 20 6 3.1299 -8.6384 -0.0969 21 6 2.8204 -9.9135 0.3381 22 6 3.3263 -10.3760 1.5385 23 6 4.1458 -9.5653 2.3014 24 6 4.4595 -8.2921 1.8639 25 6 7.0931 -5.1495 -2.0826 26 8 8.1115 -4.5577 -1.8135 27 8 7.0146 -5.8710 -3.2118 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6800 0.8912 30 1 3.8753 -0.6803 -0.8888 31 1 3.6587 -3.1501 -0.8892 32 1 3.6580 -3.1505 0.8908 33 1 6.7132 -4.6210 0.7646 34 1 5.4040 -7.1424 -1.5222 35 1 6.3891 -6.8828 -0.0627 36 1 4.4583 -5.7915 1.0463 37 1 3.4732 -6.0512 -0.4133 38 1 2.7313 -8.2756 -1.0328 39 1 2.1797 -10.5467 -0.2577 40 1 3.0809 -11.3706 1.8806 41 1 4.5407 -9.9265 3.2395 42 1 5.0998 -7.6587 2.4599 43 1 7.7967 -5.8831 -3.7804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274987976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = -151.482721 kcal Electronic energy + Delta-G solvation = -27562.842273 eV Core-core repulsion = 23506.679250 eV Total energy + Delta-G solvation = -4056.163023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52268 -39.48852 -36.99987 -36.65565 -36.07459 -35.61891 -34.01164 -33.39525 -31.53751 -31.08647 -30.15973 -27.20171 -26.04952 -23.54650 -22.77844 -21.52704 -21.45837 -21.02425 -19.27455 -18.26075 -17.74793 -17.37751 -16.99718 -16.69520 -16.22025 -15.67566 -15.54670 -15.47244 -15.21940 -14.91638 -14.34147 -14.03628 -13.77309 -13.68767 -13.58674 -13.32682 -12.94634 -12.83695 -12.54365 -12.15040 -11.94670 -11.77534 -11.75840 -11.69340 -11.57277 -11.44763 -11.30074 -11.25361 -11.11786 -11.00193 -10.95874 -10.49186 -10.20464 -9.97734 -9.60495 -9.32573 -9.12123 -8.89335 -8.69102 -6.19584 -4.21238 0.51159 1.13552 1.20110 2.08417 2.64113 2.98498 3.24876 3.32547 3.36756 3.57375 4.03203 4.19078 4.33432 4.42331 4.52638 4.62768 4.74851 4.79563 4.81981 4.92427 4.96771 5.11776 5.15757 5.25393 5.32174 5.37452 5.41588 5.42393 5.55555 5.71937 5.77039 5.87482 5.93419 6.19997 6.26208 6.31331 6.36434 6.43341 6.75377 6.78362 6.80569 6.89506 7.50632 7.76887 8.32517 8.81039 9.40067 10.92589 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.003609 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.466971 B = 7756.043891 C = 9688.484683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.583 4.583 11 S 2.582 3.418 12 O -0.958 6.958 13 O -0.956 6.956 14 N -1.103 6.103 15 C 0.168 3.832 16 H 0.127 0.873 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.462 3.538 26 O -0.491 6.491 27 O -0.517 6.517 28 H 0.267 0.733 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.420 0.580 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -21.426 -1.094 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.716 4.716 11 S 2.680 3.320 12 O -0.949 6.949 13 O -0.946 6.946 14 N -0.859 5.859 15 C 0.058 3.942 16 H 0.144 0.856 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.135 4.135 25 C 0.300 3.700 26 O -0.377 6.377 27 O -0.329 6.329 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.993 -20.336 -0.918 22.677 hybrid contribution 0.484 0.335 -0.069 0.593 sum 10.477 -20.001 -0.986 22.601 Atomic orbital electron populations 1.69874 1.06191 1.27296 1.49844 1.24971 0.94808 0.99143 0.94098 0.86949 0.80728 0.83764 0.79159 1.19664 1.20733 1.18610 1.20817 0.87649 0.94933 1.52455 0.90299 1.19418 0.99988 0.87220 0.97995 1.30349 1.20650 1.09567 1.11060 1.05998 0.79196 0.72270 0.74579 1.93576 1.79164 1.77096 1.45021 1.93585 1.78116 1.77413 1.45448 1.55805 1.74493 1.30250 1.25340 1.20216 0.93363 0.95052 0.85591 0.85556 1.21845 0.98776 0.93064 1.01407 1.20723 0.97466 0.93691 1.00791 1.19827 0.97270 0.95867 0.94848 1.21129 0.98139 0.94079 0.99926 1.21161 0.99942 0.96074 0.96572 1.21149 0.98265 0.99817 0.95253 1.21148 0.98506 0.94391 0.99764 1.21111 1.00146 0.96093 0.96120 1.24008 0.90115 0.75300 0.80587 1.90743 1.31770 1.41365 1.73775 1.84507 1.47439 1.67089 1.33817 0.92346 0.94849 0.95320 0.85671 0.85081 0.74550 0.88752 0.90257 0.89800 0.89586 0.85755 0.86145 0.86353 0.86217 0.85943 0.73142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -13.98 9.66 -34.44 -0.33 -14.31 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 10 C -0.58 -9.77 5.90 37.16 0.22 -9.55 16 11 S 2.58 42.64 5.38 -107.50 -0.58 42.07 16 12 O -0.96 -18.59 18.08 -57.54 -1.04 -19.63 16 13 O -0.96 -18.93 17.78 -57.54 -1.02 -19.95 16 14 N -1.10 -12.95 4.30 -5.89 -0.03 -12.97 16 15 C 0.17 1.70 2.58 -69.09 -0.18 1.52 16 16 H 0.13 1.10 7.15 -51.93 -0.37 0.73 16 17 C -0.11 -0.83 4.76 -26.73 -0.13 -0.95 16 18 C -0.09 -0.71 5.23 -27.88 -0.15 -0.86 16 19 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 20 C -0.11 -0.98 9.70 -39.58 -0.38 -1.37 16 21 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 22 C -0.13 -1.02 10.05 -39.59 -0.40 -1.41 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 25 C 0.46 5.49 7.66 36.01 0.28 5.77 16 26 O -0.49 -7.76 17.19 -18.75 -0.32 -8.09 16 27 O -0.52 -4.48 13.23 -39.27 -0.52 -5.00 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 29 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 30 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 31 H 0.12 1.79 7.44 -51.93 -0.39 1.40 16 32 H 0.13 1.93 8.14 -51.92 -0.42 1.51 16 33 H 0.42 4.05 8.80 -34.47 -0.30 3.75 16 34 H 0.09 0.61 7.99 -51.93 -0.42 0.20 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 37 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.41 2.01 9.10 45.56 0.41 2.42 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -38.24 382.03 -9.84 -48.08 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.19 Total: 3.80 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -3.00 Total: -24.86 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.75 Total: -38.67 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.90 Total: -52.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 42.64 SS G_CDS: -0.58 Total: 42.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.24 -9.84 -48.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274987976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.403 kcal (2) G-P(sol) polarization free energy of solvation -38.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds