Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 N 1.46507 * 109.46939 * 270.21609 * 7 6 5 9 9 C 1.46501 * 119.99467 * 274.99759 * 8 7 6 10 10 C 1.50702 * 109.47306 * 84.99984 * 9 8 7 11 11 O 1.20829 * 119.99471 * 359.97438 * 10 9 8 12 12 O 1.34221 * 120.00170 * 179.97438 * 10 9 8 13 13 S 1.65597 * 120.00356 * 94.99499 * 8 7 6 14 14 O 1.42092 * 104.27831 * 206.07285 * 13 8 7 15 15 O 1.42107 * 104.27672 * 333.93264 * 13 8 7 16 16 C 1.81405 * 104.44769 * 89.99968 * 13 8 7 17 17 C 1.52994 * 109.46946 * 180.02562 * 16 13 8 18 18 C 1.50702 * 109.47194 * 180.02562 * 17 16 13 19 19 H 1.08007 * 119.99612 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00338 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99714 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47188 * 89.99478 * 22 20 18 24 24 H 1.48493 * 109.47155 * 209.99883 * 22 20 18 25 25 H 1.48502 * 109.46977 * 329.99725 * 22 20 18 26 26 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 28 28 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 29 29 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 30 30 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 33 33 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 34 34 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 35 35 H 1.09006 * 109.46603 * 204.99666 * 9 8 7 36 36 H 1.08996 * 109.47630 * 324.99897 * 9 8 7 37 37 H 0.96706 * 117.00357 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.47256 * 300.00287 * 16 13 8 39 39 H 1.08996 * 109.46717 * 60.00308 * 16 13 8 40 40 H 1.09006 * 109.47274 * 300.00075 * 17 16 13 41 41 H 1.09001 * 109.47760 * 59.99948 * 17 16 13 42 42 H 0.97004 * 119.99695 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.99700 * 359.96970 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 7 4.5783 -2.9250 -1.3818 9 6 3.5536 -3.6780 -2.1093 10 6 2.5706 -2.7187 -2.7294 11 8 2.7113 -1.5282 -2.5787 12 8 1.5389 -3.1869 -3.4491 13 16 6.0125 -2.5517 -2.1208 14 8 5.6970 -2.5272 -3.5060 15 8 6.4579 -1.3807 -1.4500 16 6 7.0968 -3.9551 -1.7395 17 6 8.4697 -3.7260 -2.3746 18 6 9.3704 -4.8921 -2.0584 19 1 9.0006 -5.7142 -1.4635 20 6 10.6668 -4.9091 -2.5276 21 7 11.1172 -3.9077 -3.2515 22 14 11.7834 -6.3542 -2.1350 23 1 11.6494 -7.3855 -3.1950 24 1 13.1921 -5.8886 -2.0725 25 1 11.3963 -6.9374 -0.8253 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 -0.0091 33 1 5.2866 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5132 35 1 4.0261 -4.2710 -2.8925 36 1 3.0299 -4.3392 -1.4190 37 1 0.9350 -2.5332 -3.8275 38 1 7.2073 -4.0458 -0.6589 39 1 6.6599 -4.8706 -2.1382 40 1 8.3596 -3.6350 -3.4552 41 1 8.9065 -2.8105 -1.9756 42 1 12.0291 -3.9198 -3.5820 43 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275245721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -137.881781 kcal Electronic energy + Delta-G solvation = -28506.509694 eV Core-core repulsion = 24450.936452 eV Total energy + Delta-G solvation = -4055.573241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.29352 -39.23885 -36.71728 -36.64824 -35.69018 -35.42481 -33.93977 -32.79230 -31.43440 -31.20986 -28.60731 -26.83499 -25.73687 -25.33177 -22.11701 -21.92530 -21.51820 -20.61131 -18.55050 -18.09994 -17.68152 -16.98142 -16.52015 -16.44330 -16.11606 -15.43562 -15.32468 -15.16999 -14.85760 -14.61910 -14.57954 -13.77147 -13.46600 -13.43127 -13.08613 -12.93231 -12.89598 -12.54332 -12.51705 -12.13925 -11.90924 -11.81926 -11.63823 -11.53660 -11.51182 -11.29934 -11.15812 -11.11499 -11.00358 -10.78381 -10.60795 -10.44890 -10.42386 -9.82704 -9.47218 -9.05678 -8.59137 -8.53824 -8.41548 -6.15761 -4.21927 0.57754 1.49439 1.58602 2.28953 2.75937 3.13065 3.23927 3.30394 3.32792 3.93004 4.27515 4.36753 4.41450 4.51941 4.76051 4.85922 4.96048 5.05533 5.07420 5.19011 5.19751 5.26561 5.34657 5.41879 5.47540 5.52148 5.56633 5.67708 5.70888 5.80807 5.83599 6.16838 6.28619 6.35634 6.41029 6.51508 6.64414 6.71350 6.80361 7.20939 7.24986 7.30384 7.76767 7.93588 8.12750 8.81500 9.43195 10.95200 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.003121 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.839908 B = 8969.785765 C = 9607.725478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.094 4.094 6 C -0.094 4.094 7 C 0.162 3.838 8 N -0.985 5.985 9 C 0.137 3.863 10 C 0.450 3.550 11 O -0.479 6.479 12 O -0.523 6.523 13 S 2.584 3.416 14 O -0.959 6.959 15 O -0.950 6.950 16 C -0.588 4.588 17 C 0.028 3.972 18 C -0.521 4.521 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.090 4.090 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.406 0.594 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 2.505 7.279 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.113 4.113 6 C -0.095 4.095 7 C 0.037 3.963 8 N -0.819 5.819 9 C 0.008 3.992 10 C 0.288 3.712 11 O -0.364 6.364 12 O -0.335 6.335 13 S 2.683 3.317 14 O -0.950 6.950 15 O -0.941 6.941 16 C -0.721 4.721 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.109 4.109 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.265 0.735 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.258 3.419 6.912 22.614 hybrid contribution 0.271 -0.786 0.001 0.832 sum -20.987 2.633 6.913 22.253 Atomic orbital electron populations 1.20717 0.91831 1.02136 1.01828 1.19696 0.95429 0.93305 1.01180 1.20926 0.94350 0.97052 1.01260 1.21102 0.94130 0.98113 1.00663 1.21380 1.01251 0.91671 0.96983 1.19999 0.93702 0.95307 1.00518 1.20270 1.01268 0.93276 0.81461 1.57893 1.30659 1.70346 1.22953 1.20580 0.89198 0.91590 0.97791 1.24142 0.80746 0.89972 0.76379 1.90813 1.72409 1.17423 1.55721 1.84501 1.38725 1.45731 1.64510 1.06125 0.73737 0.77705 0.74144 1.93545 1.82326 1.87375 1.31723 1.93515 1.80715 1.44538 1.75302 1.30515 1.13682 1.16932 1.11018 1.18973 0.86370 0.99491 0.96257 1.20989 0.96376 1.04622 1.34105 0.91962 1.25076 0.98135 0.96401 0.94870 1.69958 1.17144 1.30818 1.34839 0.86461 0.79808 0.82151 0.78822 1.20436 1.20984 1.19715 1.20621 0.93363 0.96762 1.00107 0.91720 0.92059 0.91956 0.86870 0.86418 0.84296 0.88408 0.89511 0.85777 0.86281 0.73541 0.85984 0.86138 0.94887 0.94767 0.92469 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.10 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 4 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 5 C -0.09 -1.42 9.13 -39.58 -0.36 -1.78 16 6 C -0.09 -1.26 4.06 -104.63 -0.43 -1.68 16 7 C 0.16 1.84 5.44 -5.19 -0.03 1.82 16 8 N -0.99 -12.88 2.37 -116.94 -0.28 -13.15 16 9 C 0.14 1.44 5.87 -5.19 -0.03 1.41 16 10 C 0.45 5.59 7.82 36.01 0.28 5.87 16 11 O -0.48 -7.61 13.64 -18.75 -0.26 -7.86 16 12 O -0.52 -4.97 13.42 -39.23 -0.53 -5.50 16 13 S 2.58 45.96 5.32 -107.50 -0.57 45.39 16 14 O -0.96 -20.02 16.99 -57.54 -0.98 -21.00 16 15 O -0.95 -19.00 14.80 -57.54 -0.85 -19.86 16 16 C -0.59 -10.67 6.12 37.15 0.23 -10.44 16 17 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 18 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 22 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.09 -1.09 6.84 -39.58 -0.27 -1.36 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 30 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.14 2.25 6.46 -52.48 -0.34 1.91 16 33 H 0.10 1.07 7.55 -51.93 -0.39 0.68 16 34 H 0.09 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.12 1.21 7.61 -51.93 -0.40 0.82 16 36 H 0.12 0.74 8.00 -51.93 -0.42 0.33 16 37 H 0.41 2.43 9.10 45.56 0.41 2.85 16 38 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -37.38 374.93 -9.59 -46.98 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.30 Total: 3.75 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -2.19 Total: -24.76 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.46 Total: -38.60 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -2.61 Total: -54.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 45.96 SS G_CDS: -0.57 Total: 45.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.38 -9.59 -46.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275245721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.906 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds