Wall clock time and date at job start Sat Apr 11 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47021 * 330.11323 * 3 2 1 5 5 C 1.37090 * 119.99969 * 264.38757 * 4 3 2 6 6 H 1.08000 * 120.00062 * 196.17858 * 5 4 3 7 7 C 1.38942 * 120.00243 * 16.17644 * 5 4 3 8 8 N 1.31411 * 119.99939 * 20.85359 * 7 5 4 9 9 Si 1.86798 * 120.00417 * 200.85184 * 7 5 4 10 10 H 1.48500 * 109.47156 * 84.94427 * 9 7 5 11 11 H 1.48504 * 109.47290 * 204.94498 * 9 7 5 12 12 H 1.48503 * 109.47267 * 324.94403 * 9 7 5 13 13 C 1.34775 * 119.99717 * 84.39537 * 4 3 2 14 14 O 1.21297 * 119.99837 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00345 * 359.97438 * 13 4 3 16 16 C 1.50697 * 109.47188 * 180.02562 * 15 13 4 17 17 C 1.38289 * 119.97644 * 270.25713 * 16 15 13 18 18 C 1.38241 * 120.11458 * 180.30129 * 17 16 15 19 19 C 1.38167 * 120.05386 * 359.44421 * 18 17 16 20 20 C 1.38702 * 119.94307 * 0.28084 * 19 18 17 21 21 O 1.35904 * 120.05511 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99821 * 0.02562 * 21 20 19 23 23 C 1.53001 * 109.47086 * 179.97438 * 22 21 20 24 24 F 1.39900 * 109.47139 * 59.99639 * 23 22 21 25 25 F 1.39904 * 109.47357 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.47087 * 299.99671 * 23 22 21 27 27 C 1.38123 * 119.97365 * 90.00272 * 16 15 13 28 28 H 4.40638 * 5.51488 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47018 * 210.11329 * 3 2 1 30 30 H 1.09004 * 109.47356 * 90.11129 * 3 2 1 31 31 H 0.97005 * 120.00457 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46698 * 60.00827 * 15 13 4 33 33 H 1.08991 * 109.47612 * 300.00709 * 15 13 4 34 34 H 1.08009 * 119.94315 * 0.04505 * 17 16 15 35 35 H 1.07998 * 119.97174 * 179.72597 * 18 17 16 36 36 H 1.07997 * 120.02643 * 180.25817 * 19 18 17 37 37 H 1.09004 * 109.46862 * 299.99744 * 22 21 20 38 38 H 1.09000 * 109.47492 * 59.99993 * 22 21 20 39 39 H 1.08000 * 120.02233 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1967 0.6883 5 6 3.4727 -1.1345 2.0154 6 1 4.0686 -1.9189 2.4582 7 6 3.0486 -0.0624 2.7908 8 7 2.0204 0.6601 2.4068 9 14 3.9401 0.3519 4.3793 10 1 5.1111 1.2144 4.0792 11 1 3.0161 1.0716 5.2922 12 1 4.4017 -0.9011 5.0292 13 6 3.2524 -2.3592 0.0166 14 8 3.6576 -3.3505 0.5863 15 6 2.8806 -2.4276 -1.4422 16 6 3.1017 -3.8285 -1.9518 17 6 4.3285 -4.1859 -2.4804 18 6 4.5325 -5.4683 -2.9544 19 6 3.5141 -6.3999 -2.8905 20 6 2.2844 -6.0456 -2.3555 21 8 1.2809 -6.9599 -2.2920 22 6 1.5622 -8.2678 -2.7941 23 6 0.3227 -9.1512 -2.6388 24 9 -0.7401 -8.5941 -3.3580 25 9 0.5979 -10.4316 -3.1309 26 9 -0.0232 -9.2356 -1.2859 27 6 2.0804 -4.7561 -1.8856 28 1 -1.0499 -0.0002 0.0003 29 1 3.0088 0.8898 0.5156 30 1 3.0093 0.0028 -1.0277 31 1 1.7240 1.4084 2.9483 32 1 3.5009 -1.7327 -2.0082 33 1 1.8312 -2.1589 -1.5627 34 1 5.1275 -3.4605 -2.5269 35 1 5.4902 -5.7437 -3.3709 36 1 3.6753 -7.4028 -3.2571 37 1 1.8323 -8.2020 -3.8481 38 1 2.3900 -8.7020 -2.2334 39 1 1.1236 -4.4776 -1.4693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281552033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:08 Heat of formation + Delta-G solvation = -127.310908 kcal Electronic energy + Delta-G solvation = -28685.293357 eV Core-core repulsion = 23952.877811 eV Total energy + Delta-G solvation = -4732.415546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.41848 -47.98440 -47.85177 -40.30600 -38.84763 -37.47505 -35.15905 -32.54377 -31.86002 -31.32926 -31.20932 -29.19103 -27.65502 -26.35507 -24.52974 -23.85091 -22.52710 -21.42883 -19.40433 -18.94326 -18.75622 -18.08607 -17.92338 -17.39491 -16.63121 -16.20230 -16.03622 -15.91254 -15.62716 -14.82667 -14.69566 -14.59051 -14.52151 -14.32417 -14.09431 -14.03237 -14.02776 -13.87119 -13.35440 -12.97922 -12.89051 -12.62390 -12.40370 -12.19101 -12.01950 -11.64007 -11.51593 -11.24241 -11.22377 -11.03202 -10.76519 -10.49990 -10.31474 -9.39052 -9.30461 -8.90923 -8.78365 -8.37583 -8.15127 -7.88993 -6.34511 -3.86631 1.44560 1.55923 1.98498 2.82332 3.14716 3.24994 3.29002 3.38768 3.60492 3.64729 3.85038 3.91579 4.02759 4.05258 4.18876 4.49638 4.58376 4.82687 4.87365 4.99523 5.04520 5.20068 5.39628 5.45130 5.48344 5.62071 5.77610 5.91064 6.04793 6.13126 6.29171 6.32944 6.51060 6.71146 6.75109 6.86831 7.01912 7.27156 7.55478 8.02533 8.41073 8.78505 9.12266 9.34068 9.88855 10.66264 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002489 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.507315 B =11248.247846 C =11497.615714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.454 3.546 14 O -0.575 6.575 15 C -0.102 4.102 16 C -0.002 4.002 17 C -0.135 4.135 18 C -0.081 4.081 19 C -0.216 4.216 20 C 0.121 3.879 21 O -0.302 6.302 22 C 0.016 3.984 23 C 0.465 3.535 24 F -0.174 7.174 25 F -0.174 7.174 26 F -0.172 7.172 27 C -0.126 4.126 28 H 0.199 0.801 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -11.425 -14.507 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.116 4.116 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.441 4.441 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.242 3.758 14 O -0.458 6.458 15 C -0.142 4.142 16 C -0.002 4.002 17 C -0.153 4.153 18 C -0.099 4.099 19 C -0.234 4.234 20 C 0.077 3.923 21 O -0.216 6.216 22 C -0.062 4.062 23 C 0.410 3.590 24 F -0.155 7.155 25 F -0.156 7.156 26 F -0.153 7.153 27 C -0.145 4.145 28 H 0.216 0.784 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.017 -11.738 -14.035 18.297 hybrid contribution -0.107 0.113 0.903 0.916 sum -0.124 -11.625 -13.133 17.539 Atomic orbital electron populations 1.24294 0.95407 1.02530 1.05690 1.23200 0.94378 0.98257 0.95772 1.18323 0.84251 0.91847 0.94934 1.43711 1.56083 1.06269 1.09902 1.19674 1.31145 1.08800 0.84474 0.87768 1.25271 0.95248 0.97413 0.99390 1.70080 1.20923 1.19659 1.39566 0.86011 0.79109 0.78840 0.81186 1.20282 1.21129 1.19489 1.19803 0.84704 0.83471 0.87798 1.90558 1.50611 1.34538 1.70122 1.20729 1.03672 0.93541 0.96275 1.19245 0.92605 0.94682 0.93715 1.20959 0.96767 0.96834 1.00742 1.20806 0.98008 0.92905 0.98222 1.21046 0.93728 1.00687 1.07969 1.18751 0.86656 0.88826 0.98069 1.86032 1.37741 1.18517 1.79291 1.23724 0.94605 0.84220 1.03629 1.20040 0.85208 0.79235 0.74499 1.93234 1.59444 1.84913 1.77938 1.93217 1.93755 1.40772 1.87850 1.93252 1.93179 1.96207 1.32671 1.20242 1.01029 0.90149 1.03044 0.78383 0.86912 0.92037 0.92117 0.89043 0.88871 0.85813 0.85806 0.85966 0.87494 0.87418 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.26 19.25 29.55 0.57 -4.70 16 2 C -0.11 -2.49 10.95 -37.12 -0.41 -2.89 16 3 C 0.23 4.88 4.91 -6.83 -0.03 4.85 16 4 N -0.44 -10.80 2.60 -117.93 -0.31 -11.10 16 5 C -0.31 -8.48 9.35 -14.94 -0.14 -8.62 16 6 H 0.10 2.99 7.36 -52.49 -0.39 2.60 16 7 C 0.03 0.79 4.90 -17.47 -0.09 0.70 16 8 N -0.86 -22.29 9.39 55.50 0.52 -21.77 16 9 Si 0.92 20.28 29.60 -169.99 -5.03 15.25 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.45 10.63 7.56 -10.99 -0.08 10.54 16 14 O -0.57 -15.56 15.67 5.54 0.09 -15.48 16 15 C -0.10 -1.80 4.43 -29.04 -0.13 -1.93 16 16 C 0.00 -0.03 4.37 -104.65 -0.46 -0.49 16 17 C -0.13 -1.99 9.70 -39.56 -0.38 -2.37 16 18 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 19 C -0.22 -2.64 9.04 -39.44 -0.36 -3.00 16 20 C 0.12 1.75 6.69 -39.22 -0.26 1.49 16 21 O -0.30 -4.04 10.02 -19.44 -0.19 -4.23 16 22 C 0.02 0.14 4.70 37.16 0.17 0.32 16 23 C 0.46 4.58 3.32 37.16 0.12 4.70 16 24 F -0.17 -1.94 17.26 2.25 0.04 -1.90 16 25 F -0.17 -1.55 17.32 2.25 0.04 -1.51 16 26 F -0.17 -2.05 17.26 2.25 0.04 -2.01 16 27 C -0.13 -2.10 9.64 -39.43 -0.38 -2.48 16 28 H 0.20 3.28 7.80 -54.10 -0.42 2.86 16 29 H 0.11 2.54 6.34 -51.93 -0.33 2.21 16 30 H 0.06 1.05 6.67 -51.93 -0.35 0.71 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.09 1.59 7.46 -51.93 -0.39 1.20 16 34 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 37 H 0.11 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.11 0.78 7.66 -51.93 -0.40 0.38 16 39 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -32.22 356.40 -5.47 -37.69 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.78 Total: 4.97 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.25 Total: -5.29 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.21 Total: -32.87 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.11 Total: -19.71 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.12 Total: -5.42 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.22 -5.47 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281552033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.617 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds