Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47135 * 65.93042 * 3 2 1 5 5 C 1.37106 * 120.00003 * 263.70894 * 4 3 2 6 6 H 1.07997 * 120.00198 * 201.97008 * 5 4 3 7 7 C 1.38952 * 119.99817 * 21.97501 * 5 4 3 8 8 N 1.31415 * 119.99758 * 8.99387 * 7 5 4 9 9 Si 1.86793 * 119.99960 * 188.99114 * 7 5 4 10 10 H 1.48493 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46932 * 119.99913 * 9 7 5 12 12 H 1.48498 * 109.47141 * 239.99782 * 9 7 5 13 13 C 1.34769 * 120.00273 * 83.71296 * 4 3 2 14 14 O 1.21291 * 120.00259 * 185.17221 * 13 4 3 15 15 C 1.50698 * 119.99918 * 5.16979 * 13 4 3 16 16 H 1.09005 * 109.47485 * 315.69135 * 15 13 4 17 17 O 1.42905 * 109.47178 * 195.69684 * 15 13 4 18 18 C 1.52994 * 109.47238 * 75.69390 * 15 13 4 19 19 C 1.50702 * 109.47490 * 185.33424 * 18 15 13 20 20 C 1.38250 * 120.00326 * 269.98105 * 19 18 15 21 21 C 1.38218 * 120.00168 * 179.97438 * 20 19 18 22 22 C 1.38264 * 119.99533 * 359.74689 * 21 20 19 23 23 C 1.38209 * 119.99766 * 0.53132 * 22 21 20 24 24 C 1.50702 * 119.99688 * 179.74552 * 23 22 21 25 25 F 1.39902 * 109.47161 * 269.72435 * 24 23 22 26 26 F 1.39902 * 109.47180 * 29.72235 * 24 23 22 27 27 F 1.39899 * 109.47461 * 149.72628 * 24 23 22 28 28 C 1.38217 * 119.99465 * 90.00040 * 19 18 15 29 29 H 4.40634 * 5.51452 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47155 * 305.92973 * 3 2 1 31 31 H 1.08995 * 109.47142 * 185.92728 * 3 2 1 32 32 H 0.97006 * 119.99688 * 180.02562 * 8 7 5 33 33 H 0.96697 * 114.00064 * 299.99599 * 17 15 13 34 34 H 1.09006 * 109.46949 * 65.33830 * 18 15 13 35 35 H 1.08998 * 109.47265 * 305.33976 * 18 15 13 36 36 H 1.07996 * 120.00414 * 359.97438 * 20 19 18 37 37 H 1.07998 * 120.00391 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99467 * 180.27438 * 22 21 20 39 39 H 1.07997 * 119.99991 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.5625 -1.2611 5 6 3.4863 -1.8858 -1.3303 6 1 4.1583 -2.2262 -2.1042 7 6 2.9782 -2.7890 -0.4047 8 7 2.0287 -2.4165 0.4239 9 14 3.6446 -4.5328 -0.3384 10 1 4.7012 -4.6985 -1.3685 11 1 4.2197 -4.7921 1.0060 12 1 2.5431 -5.4939 -0.5993 13 6 3.2383 0.2203 -2.3533 14 8 3.5527 -0.2649 -3.4196 15 6 2.9638 1.6984 -2.2498 16 1 2.0629 1.8601 -1.6578 17 8 2.7774 2.2412 -3.5585 18 6 4.1490 2.3912 -1.5744 19 6 3.8210 3.8453 -1.3523 20 6 4.1271 4.7793 -2.3245 21 6 3.8258 6.1128 -2.1210 22 6 3.2136 6.5118 -0.9472 23 6 2.9129 5.5788 0.0271 24 6 2.2508 6.0146 1.3088 25 9 3.2308 6.3333 2.2550 26 9 1.4557 7.1394 1.0640 27 9 1.4513 4.9757 1.7974 28 6 3.2146 4.2450 -0.1763 29 1 -1.0499 0.0001 -0.0003 30 1 3.0096 -0.6022 0.8321 31 1 3.0088 1.0229 0.1061 32 1 1.6742 -3.0469 1.0704 33 1 3.5412 2.1330 -4.1416 34 1 5.0289 2.3107 -2.2127 35 1 4.3508 1.9137 -0.6156 36 1 4.6016 4.4671 -3.2430 37 1 4.0653 6.8425 -2.8803 38 1 2.9742 7.5532 -0.7901 39 1 2.9754 3.5153 0.5831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282129187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -143.090917 kcal Electronic energy + Delta-G solvation = -29846.710884 eV Core-core repulsion = 25113.611066 eV Total energy + Delta-G solvation = -4733.099818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.24056 -47.75737 -47.70101 -39.97026 -38.91835 -36.36020 -35.10763 -33.16888 -32.18789 -31.86057 -31.28675 -28.97533 -26.54787 -26.14974 -25.35926 -23.62631 -22.38431 -21.27417 -19.58088 -18.57705 -18.46142 -18.24628 -17.94539 -17.04460 -16.49789 -16.41667 -16.01749 -15.46091 -14.78027 -14.73842 -14.66897 -14.53687 -14.37232 -14.15763 -13.99800 -13.87311 -13.85838 -13.77643 -13.34530 -13.06627 -12.72433 -12.69101 -12.54111 -12.33164 -11.81317 -11.58847 -11.39602 -11.20062 -11.14243 -11.06590 -10.55563 -10.40868 -10.38752 -9.48022 -9.34989 -9.32811 -9.03922 -8.87847 -8.34712 -7.95354 -6.37904 -4.01503 0.82406 1.10233 2.56520 3.07279 3.20488 3.25836 3.31727 3.54571 3.61652 3.80298 3.92466 4.00864 4.11381 4.33048 4.52051 4.63821 4.72952 4.79864 4.92408 4.99007 5.10784 5.16614 5.28428 5.30302 5.40092 5.51459 5.68509 5.78946 5.84819 5.99934 6.05815 6.14517 6.23853 6.40916 6.63739 6.74079 7.01593 7.45603 7.83900 7.99865 8.31611 8.77521 9.01541 9.22403 9.73925 10.60543 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003460 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.420497 B = 8091.059106 C = 9224.239992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.116 4.116 3 C 0.227 3.773 4 N -0.434 5.434 5 C -0.311 4.311 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.870 5.870 9 Si 0.928 3.072 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.422 3.578 14 O -0.577 6.577 15 C 0.104 3.896 16 H 0.111 0.889 17 O -0.541 6.541 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.071 4.071 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.182 4.182 24 C 0.508 3.492 25 F -0.179 7.179 26 F -0.180 7.180 27 F -0.174 7.174 28 C -0.069 4.069 29 H 0.199 0.801 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.270 0.730 33 H 0.376 0.624 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 17.208 2.159 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.117 4.117 3 C 0.104 3.896 4 N -0.153 5.153 5 C -0.438 4.438 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.755 3.245 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.210 3.790 14 O -0.461 6.461 15 C 0.041 3.959 16 H 0.129 0.871 17 O -0.346 6.346 18 C -0.152 4.152 19 C -0.067 4.067 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.098 4.098 23 C -0.184 4.184 24 C 0.454 3.546 25 F -0.160 7.160 26 F -0.161 7.161 27 F -0.155 7.155 28 C -0.087 4.087 29 H 0.216 0.784 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.666 17.017 2.069 17.348 hybrid contribution 0.137 -1.094 0.334 1.153 sum 2.804 15.922 2.404 16.345 Atomic orbital electron populations 1.24308 0.95440 1.05884 1.02008 1.23102 0.94317 0.95697 0.98622 1.18458 0.84414 0.96371 0.90378 1.43728 1.55285 1.09530 1.06763 1.19750 1.26217 0.82334 1.15513 0.87954 1.25395 0.95100 1.00090 0.96691 1.69968 1.24298 1.35831 1.20720 0.85823 0.78827 0.81689 0.78161 1.19236 1.20575 1.20716 1.20807 0.84826 0.88804 0.84557 1.90534 1.52928 1.75287 1.27374 1.21763 0.98398 0.90791 0.84987 0.87100 1.86532 1.44521 1.80453 1.23047 1.21429 0.99348 0.90962 1.03466 1.19769 0.97746 0.95811 0.93367 1.21294 0.96829 0.92532 0.98269 1.21113 0.99306 0.96322 0.97084 1.20876 0.96838 0.99093 0.92983 1.19886 1.07579 0.96225 0.94683 1.18339 0.76664 0.74840 0.84770 1.93218 1.62429 1.92908 1.67450 1.93176 1.75239 1.53338 1.94354 1.93223 1.74785 1.58166 1.89326 1.20897 0.95868 0.94055 0.97851 0.78352 0.86232 0.92456 0.91967 0.77594 0.89500 0.88760 0.85023 0.84948 0.85034 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.12 -2.55 10.73 -37.12 -0.40 -2.95 16 3 C 0.23 4.76 4.71 -6.83 -0.03 4.73 16 4 N -0.43 -10.38 2.60 -117.93 -0.31 -10.69 16 5 C -0.31 -8.19 9.29 -14.93 -0.14 -8.33 16 6 H 0.10 2.83 7.44 -52.49 -0.39 2.44 16 7 C 0.03 0.78 5.14 -17.47 -0.09 0.69 16 8 N -0.87 -22.10 9.00 55.50 0.50 -21.60 16 9 Si 0.93 20.02 29.56 -169.99 -5.03 14.99 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.42 9.69 6.84 -10.99 -0.08 9.61 16 14 O -0.58 -15.23 16.03 -13.85 -0.22 -15.45 16 15 C 0.10 1.83 2.53 -27.89 -0.07 1.76 16 16 H 0.11 2.04 6.70 -51.93 -0.35 1.69 16 17 O -0.54 -9.30 12.60 -54.63 -0.69 -9.99 16 18 C -0.11 -1.56 4.68 -27.88 -0.13 -1.70 16 19 C -0.07 -0.82 4.97 -104.62 -0.52 -1.34 16 20 C -0.07 -0.75 9.41 -39.58 -0.37 -1.12 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.08 -0.80 9.40 -39.58 -0.37 -1.17 16 23 C -0.18 -2.12 5.45 -104.63 -0.57 -2.69 16 24 C 0.51 5.96 3.37 36.01 0.12 6.08 16 25 F -0.18 -2.11 17.30 2.25 0.04 -2.08 16 26 F -0.18 -2.06 16.45 2.25 0.04 -2.02 16 27 F -0.17 -2.24 16.46 2.25 0.04 -2.21 16 28 C -0.07 -0.84 9.05 -39.58 -0.36 -1.20 16 29 H 0.20 3.40 7.80 -54.10 -0.42 2.98 16 30 H 0.12 2.67 6.34 -51.93 -0.33 2.34 16 31 H 0.06 0.98 4.91 -51.93 -0.25 0.72 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.25 16 33 H 0.38 5.50 8.68 45.56 0.40 5.89 16 34 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.06 7.60 -52.49 -0.40 0.66 16 39 H 0.14 1.62 7.60 -52.49 -0.40 1.22 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -31.21 351.96 -6.03 -37.24 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -2.87 Total: 10.40 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.84 Total: -3.91 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.19 Total: -32.29 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.91 Total: -25.44 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.11 Total: -6.30 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.21 -6.03 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282129187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.852 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds