Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47135 * 65.93042 * 3 2 1 5 5 C 1.37106 * 120.00003 * 263.70894 * 4 3 2 6 6 H 1.07997 * 120.00198 * 201.97008 * 5 4 3 7 7 C 1.38952 * 119.99817 * 21.97501 * 5 4 3 8 8 N 1.31415 * 119.99758 * 8.99387 * 7 5 4 9 9 Si 1.86793 * 119.99960 * 188.99114 * 7 5 4 10 10 H 1.48493 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46932 * 119.99913 * 9 7 5 12 12 H 1.48498 * 109.47141 * 239.99782 * 9 7 5 13 13 C 1.34769 * 120.00273 * 83.71296 * 4 3 2 14 14 O 1.21291 * 120.00259 * 185.17221 * 13 4 3 15 15 C 1.50698 * 119.99918 * 5.16979 * 13 4 3 16 16 H 1.09005 * 109.47485 * 315.69135 * 15 13 4 17 17 O 1.42905 * 109.47178 * 195.69684 * 15 13 4 18 18 C 1.52994 * 109.47238 * 75.69390 * 15 13 4 19 19 C 1.50702 * 109.47490 * 185.33424 * 18 15 13 20 20 C 1.38250 * 120.00326 * 269.98105 * 19 18 15 21 21 C 1.38218 * 120.00168 * 179.97438 * 20 19 18 22 22 C 1.38264 * 119.99533 * 359.74689 * 21 20 19 23 23 C 1.38209 * 119.99766 * 0.53132 * 22 21 20 24 24 C 1.50702 * 119.99688 * 179.74552 * 23 22 21 25 25 F 1.39902 * 109.47161 * 269.72435 * 24 23 22 26 26 F 1.39902 * 109.47180 * 29.72235 * 24 23 22 27 27 F 1.39899 * 109.47461 * 149.72628 * 24 23 22 28 28 C 1.38217 * 119.99465 * 90.00040 * 19 18 15 29 29 H 4.40634 * 5.51452 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47155 * 305.92973 * 3 2 1 31 31 H 1.08995 * 109.47142 * 185.92728 * 3 2 1 32 32 H 0.97006 * 119.99688 * 180.02562 * 8 7 5 33 33 H 0.96697 * 114.00064 * 299.99599 * 17 15 13 34 34 H 1.09006 * 109.46949 * 65.33830 * 18 15 13 35 35 H 1.08998 * 109.47265 * 305.33976 * 18 15 13 36 36 H 1.07996 * 120.00414 * 359.97438 * 20 19 18 37 37 H 1.07998 * 120.00391 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99467 * 180.27438 * 22 21 20 39 39 H 1.07997 * 119.99991 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.5625 -1.2611 5 6 3.4863 -1.8858 -1.3303 6 1 4.1583 -2.2262 -2.1042 7 6 2.9782 -2.7890 -0.4047 8 7 2.0287 -2.4165 0.4239 9 14 3.6446 -4.5328 -0.3384 10 1 4.7012 -4.6985 -1.3685 11 1 4.2197 -4.7921 1.0060 12 1 2.5431 -5.4939 -0.5993 13 6 3.2383 0.2203 -2.3533 14 8 3.5527 -0.2649 -3.4196 15 6 2.9638 1.6984 -2.2498 16 1 2.0629 1.8601 -1.6578 17 8 2.7774 2.2412 -3.5585 18 6 4.1490 2.3912 -1.5744 19 6 3.8210 3.8453 -1.3523 20 6 4.1271 4.7793 -2.3245 21 6 3.8258 6.1128 -2.1210 22 6 3.2136 6.5118 -0.9472 23 6 2.9129 5.5788 0.0271 24 6 2.2508 6.0146 1.3088 25 9 3.2308 6.3333 2.2550 26 9 1.4557 7.1394 1.0640 27 9 1.4513 4.9757 1.7974 28 6 3.2146 4.2450 -0.1763 29 1 -1.0499 0.0001 -0.0003 30 1 3.0096 -0.6022 0.8321 31 1 3.0088 1.0229 0.1061 32 1 1.6742 -3.0469 1.0704 33 1 3.5412 2.1330 -4.1416 34 1 5.0289 2.3107 -2.2127 35 1 4.3508 1.9137 -0.6156 36 1 4.6016 4.4671 -3.2430 37 1 4.0653 6.8425 -2.8803 38 1 2.9742 7.5532 -0.7901 39 1 2.9754 3.5153 0.5831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282129187.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -160.574437 kcal Electronic energy + Delta-G solvation = -29847.469026 eV Core-core repulsion = 25113.611066 eV Total energy + Delta-G solvation = -4733.857960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.16619 -48.68529 -48.63466 -41.23530 -40.21806 -37.86816 -36.87798 -34.37163 -33.83409 -33.06794 -32.70454 -30.21706 -28.25937 -27.07361 -26.90639 -25.10218 -23.24285 -22.23054 -21.25213 -19.74621 -19.50018 -19.38611 -19.23899 -18.63838 -18.18486 -17.49417 -17.20426 -16.65292 -16.40655 -16.11813 -15.77771 -15.55268 -15.52233 -15.25184 -15.19792 -15.08706 -14.88063 -14.79725 -14.75382 -14.29942 -14.14033 -13.96492 -13.70544 -13.56209 -13.38066 -12.90712 -12.87071 -12.73053 -12.49568 -12.24307 -12.14196 -12.07557 -11.74489 -11.30116 -11.07910 -10.62393 -10.30566 -10.13072 -9.84289 -9.73679 -8.29598 -6.01262 -0.00515 0.27093 1.34272 1.42317 1.54579 1.66658 1.78731 2.06954 2.30275 2.35987 2.52518 2.72937 3.00362 3.04968 3.08531 3.36705 3.42782 3.71495 3.76595 3.89901 3.95093 3.99781 4.14542 4.19350 4.31858 4.42227 4.50752 4.66018 4.82261 4.85645 5.00362 5.03086 5.19263 5.35265 5.41211 5.42900 5.52645 5.83983 6.01561 6.39093 6.66800 7.09753 7.11232 7.36102 7.88470 8.66075 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003460 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.420497 B = 8091.059106 C = 9224.239992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.152 4.152 3 C 0.230 3.770 4 N -0.444 5.444 5 C -0.344 4.344 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.880 5.880 9 Si 0.988 3.012 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.283 1.283 13 C 0.413 3.587 14 O -0.621 6.621 15 C 0.121 3.879 16 H 0.105 0.895 17 O -0.546 6.546 18 C -0.102 4.102 19 C -0.080 4.080 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.194 4.194 24 C 0.509 3.491 25 F -0.181 7.181 26 F -0.177 7.177 27 F -0.184 7.184 28 C -0.082 4.082 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.272 0.728 33 H 0.388 0.612 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 18.847 2.153 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.154 4.154 3 C 0.108 3.892 4 N -0.163 5.163 5 C -0.472 4.472 6 H 0.096 0.904 7 C -0.202 4.202 8 N -0.518 5.518 9 Si 0.812 3.188 10 H -0.197 1.197 11 H -0.190 1.190 12 H -0.209 1.209 13 C 0.203 3.797 14 O -0.508 6.508 15 C 0.058 3.942 16 H 0.123 0.877 17 O -0.352 6.352 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.091 4.091 21 C -0.131 4.131 22 C -0.095 4.095 23 C -0.195 4.195 24 C 0.455 3.545 25 F -0.162 7.162 26 F -0.159 7.159 27 F -0.165 7.165 28 C -0.100 4.100 29 H 0.247 0.753 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.744 18.681 2.091 18.997 hybrid contribution 0.062 -1.532 0.304 1.563 sum 2.806 17.149 2.396 17.541 Atomic orbital electron populations 1.25158 0.96469 1.04688 1.00614 1.23510 0.95132 0.96857 0.99898 1.18499 0.84347 0.97806 0.88523 1.43899 1.55250 1.09056 1.08074 1.19696 1.27367 0.84166 1.15988 0.90405 1.26052 0.95071 1.03112 0.95961 1.70083 1.24372 1.36730 1.20588 0.84944 0.77950 0.77349 0.78523 1.19713 1.18987 1.20871 1.21802 0.83295 0.91018 0.83631 1.90489 1.54662 1.76776 1.28884 1.21556 0.99718 0.87286 0.85675 0.87722 1.86497 1.45586 1.79925 1.23159 1.21253 0.97841 0.91856 1.03046 1.19611 0.99256 0.94963 0.94199 1.21580 0.96267 0.92885 0.98336 1.21486 0.97910 0.96387 0.97354 1.21225 0.95832 0.99846 0.92611 1.19946 1.08247 0.96327 0.95012 1.18388 0.76525 0.74649 0.84891 1.93212 1.62458 1.92900 1.67617 1.93176 1.75209 1.53166 1.94328 1.93201 1.75108 1.58692 1.89504 1.20933 0.96484 0.94535 0.98061 0.75300 0.87895 0.88849 0.91789 0.76262 0.88324 0.88950 0.83296 0.81671 0.82954 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.18 19.25 74.32 1.43 -8.75 16 2 C -0.15 -6.71 10.73 31.13 0.33 -6.38 16 3 C 0.23 9.81 4.71 84.57 0.40 10.21 16 4 N -0.44 -21.77 2.60 -645.42 -1.68 -23.45 16 5 C -0.34 -18.74 9.29 84.04 0.78 -17.96 16 6 H 0.08 4.51 7.44 -2.91 -0.02 4.49 16 7 C 0.00 0.03 5.14 84.93 0.44 0.47 16 8 N -0.88 -44.92 9.00 21.66 0.19 -44.73 16 9 Si 0.99 41.40 29.56 68.60 2.03 43.42 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.41 19.33 6.84 87.66 0.60 19.93 16 14 O -0.62 -33.73 16.03 15.49 0.25 -33.49 16 15 C 0.12 4.21 2.53 29.85 0.08 4.29 16 16 H 0.11 3.82 6.70 -2.38 -0.02 3.81 16 17 O -0.55 -18.22 12.60 -130.43 -1.64 -19.86 16 18 C -0.10 -2.70 4.68 29.85 0.14 -2.56 16 19 C -0.08 -1.83 4.97 -19.87 -0.10 -1.93 16 20 C -0.07 -1.33 9.41 22.27 0.21 -1.12 16 21 C -0.11 -1.70 10.05 22.27 0.22 -1.48 16 22 C -0.08 -1.31 9.40 22.27 0.21 -1.11 16 23 C -0.19 -4.17 5.45 -19.87 -0.11 -4.28 16 24 C 0.51 11.36 3.37 71.24 0.24 11.60 16 25 F -0.18 -4.08 17.30 44.97 0.78 -3.30 16 26 F -0.18 -3.77 16.45 44.97 0.74 -3.03 16 27 F -0.18 -4.65 16.46 44.97 0.74 -3.91 16 28 C -0.08 -1.92 9.05 22.27 0.20 -1.72 16 29 H 0.23 7.37 7.80 -4.42 -0.03 7.34 16 30 H 0.10 4.70 6.34 -2.39 -0.02 4.68 16 31 H 0.09 3.19 4.91 -2.39 -0.01 3.18 16 32 H 0.27 13.21 8.31 -92.70 -0.77 12.44 16 33 H 0.39 10.95 8.68 -74.06 -0.64 10.30 16 34 H 0.10 2.36 8.09 -2.38 -0.02 2.34 16 35 H 0.09 2.45 6.17 -2.39 -0.01 2.44 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.15 1.92 7.60 -2.91 -0.02 1.89 16 39 H 0.13 3.10 7.60 -2.91 -0.02 3.07 16 Total: -1.00 -68.28 351.96 6.96 -61.32 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.48 Total: 27.81 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.07 Total: -0.79 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -1.48 Total: -68.18 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.39 Total: -53.35 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 2.26 Total: -10.24 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.28 6.96 -61.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282129187.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.257 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds