Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48507 * 109.46870 * 269.99347 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99014 * 3 2 1 6 6 H 1.48496 * 109.47475 * 149.99638 * 3 2 1 7 7 C 1.37876 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46990 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47235 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54275 * 68.37271 * 12 11 10 14 14 O 1.42101 * 110.54298 * 291.62373 * 12 11 10 15 15 N 1.65599 * 104.44825 * 179.97438 * 12 11 10 16 16 C 1.46497 * 120.00110 * 65.00280 * 15 12 11 17 17 H 1.09004 * 109.69461 * 334.99845 * 16 15 12 18 18 C 1.53414 * 109.70213 * 95.55957 * 16 15 12 19 19 O 1.42826 * 108.38503 * 54.96961 * 18 16 15 20 20 C 1.35844 * 117.86953 * 49.09145 * 19 18 16 21 21 C 1.39158 * 118.49367 * 163.00500 * 20 19 18 22 22 C 1.37970 * 120.21039 * 179.82582 * 21 20 19 23 23 C 1.38294 * 119.96279 * 359.95651 * 22 21 20 24 24 C 1.38105 * 119.98123 * 0.11858 * 23 22 21 25 25 C 1.38365 * 121.81196 * 342.95012 * 20 19 18 26 26 C 1.50864 * 121.42504 * 0.33889 * 25 20 19 27 27 H 1.09001 * 109.48846 * 222.16617 * 26 25 20 28 28 O 1.42897 * 109.43515 * 102.25916 * 26 25 20 29 29 H 0.96996 * 119.99810 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47240 * 59.99562 * 9 7 2 31 31 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 32 32 H 1.08995 * 109.47375 * 59.99731 * 10 9 7 33 33 H 1.09000 * 109.47020 * 299.99390 * 10 9 7 34 34 H 1.09004 * 109.47149 * 59.99749 * 11 10 9 35 35 H 1.09000 * 109.46805 * 299.99601 * 11 10 9 36 36 H 0.96999 * 120.00046 * 244.99555 * 15 12 11 37 37 H 1.09003 * 109.68142 * 174.69079 * 18 16 15 38 38 H 1.09003 * 109.68441 * 295.24447 * 18 16 15 39 39 H 1.07997 * 119.89127 * 359.80364 * 21 20 19 40 40 H 1.07996 * 120.01443 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00860 * 180.09589 * 23 22 21 42 42 H 1.07994 * 119.84221 * 179.97438 * 24 23 22 43 43 H 0.96701 * 114.00639 * 59.85784 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3659 0.0004 13 8 3.3569 -6.4261 1.2369 14 8 3.3550 -6.4263 -1.2371 15 7 1.7088 -7.7220 0.0019 16 6 0.8482 -8.0146 -1.1469 17 1 0.6115 -7.0901 -1.6735 18 6 1.5654 -8.9820 -2.0973 19 8 1.9546 -10.1380 -1.3542 20 6 1.0182 -10.7350 -0.5719 21 6 1.2515 -12.0342 -0.1313 22 6 0.3258 -12.6730 0.6678 23 6 -0.8377 -12.0211 1.0338 24 6 -1.0731 -10.7322 0.5971 25 6 -0.1484 -10.0865 -0.2069 26 6 -0.4439 -8.6806 -0.6674 27 1 -0.8621 -8.1073 0.1600 28 8 -1.3856 -8.7201 -1.7414 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8904 32 1 2.8721 -3.6042 0.8904 33 1 2.8720 -3.6043 -0.8895 34 1 0.8534 -5.0451 -0.8886 35 1 0.8541 -5.0446 0.8914 36 1 1.7221 -8.3227 0.7634 37 1 0.8908 -9.2733 -2.9025 38 1 2.4490 -8.4992 -2.5147 39 1 2.1598 -12.5441 -0.4162 40 1 0.5099 -13.6815 1.0075 41 1 -1.5620 -12.5199 1.6605 42 1 -1.9826 -10.2254 0.8839 43 1 -2.2301 -9.1301 -1.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288507794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -170.311148 kcal Electronic energy + Delta-G solvation = -27784.911649 eV Core-core repulsion = 23727.932165 eV Total energy + Delta-G solvation = -4056.979484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98069 -38.67299 -38.22154 -38.05828 -37.11428 -36.47822 -35.95081 -34.17366 -32.36075 -31.27578 -30.23100 -29.67641 -26.44103 -25.64808 -24.50265 -23.46913 -22.46442 -21.28162 -20.44036 -18.98889 -18.96706 -18.57604 -18.36323 -17.46392 -17.27119 -17.16789 -16.72273 -16.47975 -16.28666 -16.12494 -15.73542 -15.55666 -14.83890 -14.79597 -14.62065 -14.50025 -14.10411 -13.74475 -13.53751 -13.30319 -13.23427 -13.19088 -13.05791 -12.98876 -12.93546 -12.75830 -12.63592 -12.44709 -12.16878 -12.11782 -11.76585 -11.69508 -11.38325 -11.22560 -11.02671 -10.57259 -10.54998 -9.88407 -9.17711 -8.22836 -6.33433 -0.84542 0.27758 0.45540 1.40510 1.40838 1.52210 1.56259 2.31598 2.39690 2.65254 2.76294 3.10917 3.12576 3.19359 3.40411 3.57585 3.62591 3.70683 3.79640 3.94121 4.08004 4.24212 4.27973 4.38334 4.40679 4.48217 4.57109 4.60297 4.63895 4.66263 4.89776 4.96396 5.03341 5.06500 5.31936 5.44505 5.45785 5.57485 5.63359 5.79652 5.83868 5.84852 6.19869 6.44234 6.72511 6.82250 7.35882 8.88602 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.002517 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.919505 B =11121.001375 C =11629.042829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.607 4.607 12 S 2.629 3.371 13 O -0.988 6.988 14 O -0.981 6.981 15 N -1.096 6.096 16 C 0.114 3.886 17 H 0.126 0.874 18 C 0.044 3.956 19 O -0.324 6.324 20 C 0.123 3.877 21 C -0.173 4.173 22 C -0.079 4.079 23 C -0.158 4.158 24 C -0.075 4.075 25 C -0.213 4.213 26 C 0.151 3.849 27 H 0.101 0.899 28 O -0.563 6.563 29 H 0.265 0.735 30 H 0.005 0.995 31 H 0.004 0.996 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.423 0.577 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -26.982 0.072 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.725 3.275 13 O -0.979 6.979 14 O -0.971 6.971 15 N -0.856 5.856 16 C 0.006 3.994 17 H 0.144 0.856 18 C -0.032 4.032 19 O -0.237 6.237 20 C 0.077 3.923 21 C -0.191 4.191 22 C -0.097 4.097 23 C -0.176 4.176 24 C -0.093 4.093 25 C -0.215 4.215 26 C 0.091 3.909 27 H 0.118 0.882 28 O -0.372 6.372 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.259 0.741 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -4.195 -26.539 -0.440 26.872 hybrid contribution -0.802 0.835 0.508 1.264 sum -4.997 -25.704 0.068 26.185 Atomic orbital electron populations 1.70063 1.07572 1.27881 1.51400 1.25911 0.95808 1.03156 0.94621 0.85500 0.78708 0.78639 0.78561 1.19722 1.20561 1.18987 1.21742 0.93731 0.92554 1.50991 0.92224 1.18959 0.93993 0.91681 0.96064 1.21324 0.98728 0.92369 1.02198 1.30500 1.16530 1.13282 1.13521 1.04384 0.75124 0.74946 0.73056 1.93546 1.71570 1.86337 1.46435 1.93541 1.71006 1.86095 1.46442 1.55301 1.61230 1.41363 1.27706 1.21393 0.89759 1.01334 0.86944 0.85622 1.23625 1.02367 0.84234 0.93005 1.86005 1.37097 1.43222 1.57412 1.19104 0.88955 0.92264 0.91959 1.20881 1.02471 0.92461 1.03311 1.21320 0.92882 1.00583 0.94866 1.21392 0.98558 0.95331 1.02305 1.21240 0.98444 0.95082 0.94572 1.20543 0.97053 0.98474 1.05400 1.20647 0.89006 0.90931 0.90328 0.88185 1.86462 1.28732 1.84186 1.37832 0.92631 0.97650 0.97768 0.91622 0.91334 0.83301 0.83199 0.74124 0.89119 0.86604 0.85115 0.83083 0.83265 0.83158 0.74689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.84 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.11 -4.22 5.16 30.60 0.16 -4.06 16 11 C -0.61 -17.16 5.96 71.99 0.43 -16.73 16 12 S 2.63 73.40 5.38 -56.49 -0.30 73.10 16 13 O -0.99 -34.11 18.08 -127.65 -2.31 -36.41 16 14 O -0.98 -32.52 17.31 -127.65 -2.21 -34.73 16 15 N -1.10 -23.06 5.03 -168.72 -0.85 -23.90 16 16 C 0.11 2.17 2.63 45.15 0.12 2.28 16 17 H 0.13 2.11 7.17 -2.38 -0.02 2.09 16 18 C 0.04 0.94 6.71 72.12 0.48 1.42 16 19 O -0.32 -7.67 10.02 -91.80 -0.92 -8.59 16 20 C 0.12 2.50 6.22 22.52 0.14 2.64 16 21 C -0.17 -3.05 9.94 22.43 0.22 -2.82 16 22 C -0.08 -1.00 10.04 22.22 0.22 -0.78 16 23 C -0.16 -1.73 10.04 22.25 0.22 -1.51 16 24 C -0.08 -0.88 9.65 22.30 0.22 -0.67 16 25 C -0.21 -3.45 4.94 -19.72 -0.10 -3.55 16 26 C 0.15 2.28 3.10 29.92 0.09 2.37 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 O -0.56 -7.94 12.99 -148.98 -1.93 -9.87 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.15 3.55 7.45 -2.39 -0.02 3.53 16 35 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.42 8.20 8.26 -96.75 -0.80 7.40 16 37 H 0.09 1.72 7.87 -2.39 -0.02 1.70 16 38 H 0.12 2.62 7.63 -2.39 -0.02 2.60 16 39 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.40 2.48 9.05 -74.06 -0.67 1.81 16 Total: -1.00 -77.94 371.45 -3.58 -81.53 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.42 Total: 17.68 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 3.05 Total: -49.86 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -0.56 Total: -78.78 kcal Atomic # 8 Polarization: -82.23 SS G_CDS: -7.37 Total: -89.61 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 73.40 SS G_CDS: -0.30 Total: 73.10 kcal Total: -77.94 -3.58 -81.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288507794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.786 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds