Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42104 * 110.54347 * 291.62088 * 12 11 10 14 14 O 1.42098 * 110.54694 * 68.37113 * 12 11 10 15 15 N 1.65600 * 104.45148 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99994 * 64.99714 * 15 12 11 17 17 H 1.09001 * 109.69625 * 25.00259 * 16 15 12 18 18 C 1.53416 * 109.70075 * 264.44103 * 16 15 12 19 19 O 1.42829 * 108.37845 * 175.58064 * 18 16 15 20 20 C 1.35851 * 117.85967 * 49.18301 * 19 18 16 21 21 C 1.39143 * 118.50072 * 162.82757 * 20 19 18 22 22 C 1.37972 * 120.21361 * 179.79621 * 21 20 19 23 23 C 1.38289 * 119.95681 * 359.97438 * 22 21 20 24 24 C 1.38101 * 119.98457 * 0.07902 * 23 22 21 25 25 C 1.38373 * 121.80416 * 342.75976 * 20 19 18 26 26 C 1.50790 * 121.41837 * 0.49223 * 25 20 19 27 27 H 1.09004 * 109.46940 * 222.13114 * 26 25 20 28 28 O 1.42906 * 109.41458 * 102.24941 * 26 25 20 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 31 31 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 32 32 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 33 33 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 34 34 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 35 35 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 36 36 H 0.96998 * 120.00575 * 245.00135 * 15 12 11 37 37 H 1.09000 * 109.67898 * 295.30682 * 18 16 15 38 38 H 1.08998 * 109.68123 * 55.82170 * 18 16 15 39 39 H 1.08003 * 119.89679 * 359.82001 * 21 20 19 40 40 H 1.08005 * 120.02118 * 180.02562 * 22 21 20 41 41 H 1.08008 * 120.00418 * 180.09914 * 23 22 21 42 42 H 1.07998 * 119.84065 * 180.02562 * 24 23 22 43 43 H 0.96691 * 113.99831 * 59.81983 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 16 6.1561 -4.3469 -0.0023 13 8 5.8601 -4.9811 1.2344 14 8 5.8599 -4.9799 -1.2396 15 7 7.8058 -4.2020 -0.0030 16 6 8.4891 -3.6042 1.1467 17 1 7.8755 -3.7207 2.0401 18 6 8.7393 -2.1139 0.8821 19 8 9.3110 -1.5376 2.0573 20 6 10.3668 -2.1745 2.6276 21 6 11.1584 -1.4705 3.5297 22 6 12.2370 -2.0841 4.1329 23 6 12.5331 -3.4031 3.8413 24 6 11.7502 -4.1044 2.9455 25 6 10.6676 -3.4931 2.3353 26 6 9.8417 -4.2894 1.3567 27 1 9.6824 -5.2939 1.7488 28 8 10.5324 -4.3710 0.1083 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8905 32 1 3.6579 -3.1514 0.8880 33 1 3.6585 -3.1495 -0.8920 34 1 5.9148 -2.1220 -0.8910 35 1 5.9149 -2.1236 0.8890 36 1 8.3197 -4.5129 -0.7647 37 1 9.4282 -2.0003 0.0450 38 1 7.7962 -1.6186 0.6511 39 1 10.9277 -0.4406 3.7588 40 1 12.8492 -1.5349 4.8329 41 1 13.3763 -3.8846 4.3142 42 1 11.9833 -5.1345 2.7198 43 1 11.3994 -4.7951 0.1655 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288507795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -137.586273 kcal Electronic energy + Delta-G solvation = -27766.064507 eV Core-core repulsion = 23710.504080 eV Total energy + Delta-G solvation = -4055.560427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32876 -38.11124 -37.62499 -37.02665 -35.90834 -35.10710 -34.85949 -32.24429 -32.06318 -30.69623 -29.36541 -28.44109 -25.89256 -23.80679 -23.59327 -22.88661 -20.78765 -20.56483 -19.44372 -18.39801 -18.06766 -17.50427 -17.21896 -16.88987 -16.30187 -16.13248 -15.92672 -15.59497 -15.25069 -15.00028 -14.49143 -14.36091 -14.20857 -14.10037 -13.64171 -13.25694 -12.96723 -12.70655 -12.48163 -12.34884 -12.22651 -12.20142 -12.00431 -11.94889 -11.77900 -11.63689 -11.59281 -11.13658 -10.97761 -10.95126 -10.59051 -10.11849 -9.98769 -9.86533 -9.49918 -9.36657 -9.27411 -8.61780 -8.59430 -6.09177 -4.08621 0.26863 0.79759 0.99210 2.50462 2.93789 3.26672 3.27518 3.34363 3.36000 3.63367 3.76777 4.00197 4.16232 4.22311 4.26865 4.32181 4.39827 4.63647 4.69364 4.87490 4.88361 4.96602 5.01426 5.06324 5.09666 5.16835 5.24257 5.30221 5.51200 5.57929 5.71189 5.82767 5.94340 6.07386 6.10008 6.21544 6.31794 6.63455 6.75374 7.00896 7.09009 7.10539 7.24578 7.69910 8.46490 8.95145 9.51857 11.04081 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.003007 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.823626 B = 9308.146452 C =10817.942475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.096 4.096 11 C -0.621 4.621 12 S 2.599 3.401 13 O -0.957 6.957 14 O -0.954 6.954 15 N -1.107 6.107 16 C 0.123 3.877 17 H 0.118 0.882 18 C 0.037 3.963 19 O -0.306 6.306 20 C 0.148 3.852 21 C -0.150 4.150 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.075 4.075 25 C -0.203 4.203 26 C 0.151 3.849 27 H 0.084 0.916 28 O -0.553 6.553 29 H 0.264 0.736 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.425 0.575 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.704 -6.949 5.356 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.136 4.136 11 C -0.753 4.753 12 S 2.694 3.306 13 O -0.947 6.947 14 O -0.944 6.944 15 N -0.865 5.865 16 C 0.014 3.986 17 H 0.136 0.864 18 C -0.040 4.040 19 O -0.218 6.218 20 C 0.103 3.897 21 C -0.169 4.169 22 C -0.096 4.096 23 C -0.174 4.174 24 C -0.093 4.093 25 C -0.205 4.205 26 C 0.090 3.910 27 H 0.101 0.899 28 O -0.360 6.360 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.261 0.739 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 28.337 -7.144 5.345 29.708 hybrid contribution 1.281 1.108 -0.161 1.702 sum 29.618 -6.035 5.184 30.668 Atomic orbital electron populations 1.69912 1.06297 1.26999 1.50642 1.25028 0.94760 0.99186 0.94432 0.86778 0.80322 0.83598 0.78569 1.20182 1.19030 1.21278 1.21122 0.89218 0.94775 1.51424 0.90725 1.19536 0.97383 0.90621 0.96784 1.21317 0.86248 1.03083 1.02927 1.30761 1.10036 1.23243 1.11240 1.05421 0.72563 0.78137 0.74460 1.93589 1.82737 1.72692 1.45637 1.93603 1.82386 1.73544 1.44911 1.55600 1.26351 1.77284 1.27310 1.21523 0.93652 0.92695 0.90710 0.86439 1.23766 1.00559 0.93084 0.86560 1.86085 1.43755 1.50381 1.41578 1.18782 0.87409 0.90037 0.93492 1.20690 0.95646 1.00875 0.99642 1.21022 0.95774 0.94830 0.97941 1.21028 1.01119 0.95027 1.00189 1.20878 0.93485 0.99537 0.95405 1.20407 1.01195 0.94429 1.04421 1.20693 0.89480 0.97768 0.83011 0.89861 1.86460 1.35717 1.83788 1.29987 0.92611 0.96125 0.96544 0.90885 0.90841 0.84920 0.85391 0.73908 0.89735 0.86488 0.84806 0.85156 0.85626 0.85680 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.83 5.16 -26.73 -0.14 -1.97 16 11 C -0.62 -8.57 5.18 37.16 0.19 -8.37 16 12 S 2.60 35.67 5.44 -107.50 -0.58 35.09 16 13 O -0.96 -15.90 17.40 -57.54 -1.00 -16.90 16 14 O -0.95 -15.98 18.08 -57.54 -1.04 -17.02 16 15 N -1.11 -11.31 5.37 -4.67 -0.03 -11.34 16 16 C 0.12 1.21 2.72 -67.68 -0.18 1.02 16 17 H 0.12 1.20 7.50 -51.93 -0.39 0.81 16 18 C 0.04 0.36 6.61 37.37 0.25 0.61 16 19 O -0.31 -3.38 10.27 -19.27 -0.20 -3.58 16 20 C 0.15 1.50 6.47 -39.20 -0.25 1.25 16 21 C -0.15 -1.31 9.94 -39.34 -0.39 -1.70 16 22 C -0.08 -0.53 10.04 -39.66 -0.40 -0.93 16 23 C -0.16 -0.99 10.04 -39.61 -0.40 -1.39 16 24 C -0.07 -0.50 9.64 -39.54 -0.38 -0.89 16 25 C -0.20 -1.75 5.35 -104.43 -0.56 -2.30 16 26 C 0.15 1.25 3.24 -27.80 -0.09 1.16 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 O -0.55 -3.98 12.00 -35.23 -0.42 -4.40 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.13 1.54 8.14 -51.92 -0.42 1.11 16 35 H 0.13 1.50 6.92 -51.92 -0.36 1.14 16 36 H 0.43 3.87 7.93 -34.48 -0.27 3.59 16 37 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 38 H 0.12 1.02 5.86 -51.93 -0.30 0.72 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.38 1.35 9.05 45.56 0.41 1.77 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -37.03 365.29 -9.62 -46.65 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.06 Total: 3.31 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.90 Total: -27.12 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.75 Total: -38.22 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.66 Total: -41.90 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 35.67 SS G_CDS: -0.58 Total: 35.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.03 -9.62 -46.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288507795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.940 kcal (2) G-P(sol) polarization free energy of solvation -37.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds