Wall clock time and date at job start Sat Apr 11 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38127 * 120.03656 * 2 1 4 4 C 1.38262 * 120.07416 * 180.02562 * 3 2 1 5 5 S 1.76198 * 119.93529 * 179.97438 * 4 3 2 6 6 O 1.42093 * 104.27977 * 206.07031 * 5 4 3 7 7 O 1.42103 * 104.27286 * 333.92891 * 5 4 3 8 8 C 1.81396 * 104.44915 * 89.99847 * 5 4 3 9 9 C 1.53002 * 109.47410 * 180.02562 * 8 5 4 10 10 O 1.42898 * 109.47068 * 179.97438 * 9 8 5 11 11 C 1.38306 * 120.13662 * 359.69771 * 4 3 2 12 12 C 1.38091 * 120.07026 * 0.55195 * 11 4 3 13 13 C 1.38851 * 120.03534 * 179.97438 * 2 1 3 14 14 N 1.39926 * 120.07078 * 0.04572 * 13 2 1 15 15 C 1.34777 * 119.99971 * 145.26962 * 14 13 2 16 16 O 1.21281 * 120.00040 * 4.49630 * 15 14 13 17 17 C 1.50704 * 119.99930 * 184.49259 * 15 14 13 18 18 C 1.52996 * 109.47176 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47099 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00060 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99575 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00273 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99729 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47190 * 89.99503 * 23 21 19 25 25 H 1.48496 * 109.47426 * 210.00130 * 23 21 19 26 26 H 1.48507 * 109.47116 * 329.99916 * 23 21 19 27 27 H 1.08997 * 109.47127 * 270.02723 * 1 2 3 28 28 H 1.08998 * 109.46970 * 30.02201 * 1 2 3 29 29 H 1.09003 * 109.47100 * 150.02818 * 1 2 3 30 30 H 1.08005 * 119.96454 * 359.96944 * 3 2 1 31 31 H 1.09005 * 109.47316 * 300.00249 * 8 5 4 32 32 H 1.08999 * 109.47594 * 59.99786 * 8 5 4 33 33 H 1.08997 * 109.46427 * 300.00304 * 9 8 5 34 34 H 1.09004 * 109.46952 * 60.00061 * 9 8 5 35 35 H 0.96702 * 113.99745 * 179.97438 * 10 9 8 36 36 H 1.07994 * 119.96534 * 180.29652 * 11 4 3 37 37 H 1.07998 * 120.03513 * 179.74173 * 12 11 4 38 38 H 0.97000 * 119.99781 * 325.27649 * 14 13 2 39 39 H 1.08997 * 109.47327 * 300.00700 * 17 15 14 40 40 H 1.09006 * 109.46882 * 59.99934 * 17 15 14 41 41 H 1.09008 * 109.46877 * 300.00148 * 18 17 15 42 42 H 1.09000 * 109.47206 * 59.99765 * 18 17 15 43 43 H 0.97010 * 119.99842 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1967 -0.0005 5 16 4.4593 2.7242 -0.0012 6 8 5.7061 2.4113 -0.6068 7 8 3.5613 3.6444 -0.6063 8 6 4.6856 3.1170 1.7552 9 6 5.4448 4.4386 1.8886 10 8 5.6224 4.7483 3.2723 11 6 4.2762 0.0010 0.0052 12 6 3.5909 -1.1978 0.0000 13 6 2.2020 -1.2021 0.0005 14 7 1.5046 -2.4151 0.0001 15 6 2.0009 -3.4775 -0.6645 16 8 3.0899 -3.4072 -1.1935 17 6 1.2025 -4.7528 -0.7501 18 6 1.9870 -5.7927 -1.5525 19 6 1.1884 -7.0678 -1.6387 20 1 0.2185 -7.1303 -1.1679 21 6 1.6965 -8.1549 -2.3178 22 7 2.8778 -8.0789 -2.8907 23 14 0.7069 -9.7356 -2.4240 24 1 -0.1568 -9.6988 -3.6315 25 1 1.6320 -10.8939 -2.5122 26 1 -0.1415 -9.8709 -1.2127 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6584 2.1311 -0.0005 31 1 3.7114 3.2079 2.2356 32 1 5.2544 2.3207 2.2353 33 1 6.4189 4.3480 1.4081 34 1 4.8755 5.2347 1.4087 35 1 6.0978 5.5751 3.4324 36 1 5.3562 0.0050 0.0096 37 1 4.1344 -2.1311 0.0003 38 1 0.6640 -2.4914 0.4780 39 1 1.0171 -5.1335 0.2542 40 1 0.2516 -4.5536 -1.2444 41 1 2.1727 -5.4121 -2.5570 42 1 2.9377 -5.9917 -1.0579 43 1 3.2350 -8.8436 -3.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293012995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:48 Heat of formation + Delta-G solvation = -170.253135 kcal Electronic energy + Delta-G solvation = -26558.332661 eV Core-core repulsion = 22501.355692 eV Total energy + Delta-G solvation = -4056.976969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83512 -39.82911 -38.26255 -38.01718 -37.10709 -36.14352 -35.62062 -33.72432 -33.19216 -32.39085 -31.17950 -28.23245 -27.60783 -25.12966 -24.33996 -23.34585 -22.75936 -21.34518 -19.98542 -19.08312 -18.94860 -18.74061 -18.06174 -17.77748 -17.26870 -16.86757 -16.77798 -16.49095 -16.25464 -15.81336 -15.46524 -15.27160 -15.05737 -14.92532 -14.48600 -14.28660 -14.18205 -14.10547 -13.52643 -13.31767 -13.25871 -13.23280 -13.14320 -13.07209 -12.84520 -12.67126 -12.51935 -12.49897 -12.16907 -11.96785 -11.81316 -11.67981 -11.65712 -11.32915 -11.07645 -10.84759 -10.58602 -9.94137 -9.48862 -8.20055 -6.34047 -1.07672 -0.33547 0.20326 1.41852 1.43886 1.44627 1.54964 1.76032 1.92336 2.33555 2.42008 2.78822 3.07012 3.13638 3.35032 3.60482 3.72442 3.77217 3.82263 3.86126 4.10564 4.22564 4.23201 4.36513 4.40768 4.48953 4.49764 4.55784 4.72993 4.78836 4.81631 4.93193 4.97681 5.01256 5.19296 5.25953 5.30919 5.47959 5.58453 5.79814 5.82810 6.13944 6.30470 6.79130 6.83979 7.05843 7.36542 8.92430 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.001981 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.474557 B =14130.624996 C =14556.530958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C -0.011 4.011 4 C -0.679 4.679 5 S 2.528 3.472 6 O -0.968 6.968 7 O -0.957 6.957 8 C -0.600 4.600 9 C 0.074 3.926 10 O -0.580 6.580 11 C -0.021 4.021 12 C -0.167 4.167 13 C 0.190 3.810 14 N -0.661 5.661 15 C 0.513 3.487 16 O -0.557 6.557 17 C -0.116 4.116 18 C 0.040 3.960 19 C -0.542 4.542 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.937 5.937 23 Si 0.974 3.026 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.254 1.254 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.155 0.845 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.432 0.568 39 H 0.114 0.886 40 H 0.113 0.887 41 H -0.018 1.018 42 H -0.015 1.015 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 27.945 14.875 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.030 4.030 4 C -0.767 4.767 5 S 2.710 3.290 6 O -0.965 6.965 7 O -0.954 6.954 8 C -0.731 4.731 9 C -0.005 4.005 10 O -0.390 6.390 11 C -0.040 4.040 12 C -0.188 4.188 13 C 0.093 3.907 14 N -0.308 5.308 15 C 0.303 3.697 16 O -0.434 6.434 17 C -0.155 4.155 18 C 0.002 3.998 19 C -0.580 4.580 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.798 3.202 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.177 1.177 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.190 0.810 31 H 0.182 0.818 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.273 0.727 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.540 27.704 13.725 31.022 hybrid contribution -0.006 -1.425 0.144 1.432 sum -2.546 26.280 13.869 29.824 Atomic orbital electron populations 1.20902 0.87493 1.04478 1.04526 1.20143 0.98478 0.90605 1.04279 1.21005 0.91574 0.99138 0.91262 1.30420 1.06374 1.18582 1.21298 1.04364 0.73416 0.73434 0.77833 1.93547 1.44319 1.84043 1.74623 1.93538 1.65202 1.62290 1.74386 1.30316 1.12856 1.07733 1.22176 1.21897 0.99816 0.93734 0.85091 1.86448 1.81313 1.47991 1.23255 1.20923 1.00812 0.90489 0.91819 1.21452 0.93883 0.99515 1.03986 1.18200 0.91470 0.86175 0.94818 1.43689 1.26511 1.08623 1.52004 1.21753 0.86352 0.85700 0.75875 1.90691 1.22923 1.83262 1.46527 1.21690 0.99628 0.90038 1.04151 1.18718 0.94438 0.92965 0.93659 1.21698 1.04538 0.97732 1.34024 0.90293 1.26140 0.96075 1.03318 0.95014 1.70174 1.19325 1.32180 1.36061 0.85321 0.78125 0.77554 0.79237 1.19823 1.21390 1.17745 0.88198 0.89186 0.91221 0.81028 0.81770 0.82655 0.90874 0.90217 0.74281 0.83205 0.85833 0.72713 0.86748 0.86893 0.99924 0.99676 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.48 71.24 0.68 -0.78 16 2 C -0.13 -2.65 5.90 -19.74 -0.12 -2.77 16 3 C -0.01 -0.20 9.12 22.25 0.20 0.00 16 4 C -0.68 -14.27 5.66 22.29 0.13 -14.14 16 5 S 2.53 43.78 5.15 -56.49 -0.29 43.49 16 6 O -0.97 -23.78 17.13 -127.65 -2.19 -25.97 16 7 O -0.96 -20.43 17.12 -127.65 -2.19 -22.61 16 8 C -0.60 -5.93 6.35 71.98 0.46 -5.47 16 9 C 0.07 0.69 7.05 71.98 0.51 1.19 16 10 O -0.58 -5.87 13.66 -148.98 -2.03 -7.91 16 11 C -0.02 -0.54 9.46 22.25 0.21 -0.33 16 12 C -0.17 -5.12 8.70 22.39 0.19 -4.92 16 13 C 0.19 5.06 6.29 38.15 0.24 5.30 16 14 N -0.66 -16.90 4.75 -303.50 -1.44 -18.34 16 15 C 0.51 18.57 7.68 87.66 0.67 19.24 16 16 O -0.56 -26.00 13.40 -3.03 -0.04 -26.05 16 17 C -0.12 -4.26 5.64 29.85 0.17 -4.09 16 18 C 0.04 2.14 4.26 29.85 0.13 2.26 16 19 C -0.54 -29.87 9.11 25.60 0.23 -29.64 16 20 H 0.08 3.91 7.74 -2.92 -0.02 3.89 16 21 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 22 N -0.94 -58.85 13.29 21.45 0.28 -58.56 16 23 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.07 0.90 7.17 -2.39 -0.02 0.89 16 30 H 0.17 2.17 7.56 -2.91 -0.02 2.15 16 31 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.41 0.27 9.12 -74.06 -0.68 -0.41 16 36 H 0.15 3.42 7.57 -2.91 -0.02 3.40 16 37 H 0.12 4.46 6.20 -2.91 -0.02 4.45 16 38 H 0.43 7.16 7.85 -92.71 -0.73 6.44 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 41 H -0.02 -1.08 8.10 -2.38 -0.02 -1.10 16 42 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 43 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -90.07 378.30 -2.06 -92.13 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.35 Total: 12.38 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 4.16 Total: -34.12 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.16 Total: -76.90 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: -6.45 Total: -82.53 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.29 Total: 43.49 kcal Total: -90.07 -2.06 -92.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293012995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.126 kcal (2) G-P(sol) polarization free energy of solvation -90.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds