Wall clock time and date at job start Sat Apr 11 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47302 * 29.99802 * 3 2 1 6 6 H 1.48504 * 109.47267 * 149.99458 * 3 2 1 7 7 C 1.38980 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.36498 * 126.06200 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50120 * 179.97438 * 10 9 7 12 12 N 1.40528 * 126.08659 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00297 * 180.02562 * 12 11 10 14 14 O 1.21616 * 119.99567 * 0.02562 * 13 12 11 15 15 C 1.47584 * 120.00184 * 179.97438 * 13 12 11 16 16 C 1.39643 * 120.17925 * 55.00132 * 15 13 12 17 17 C 1.38052 * 119.89244 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.87614 * 179.97438 * 17 16 15 19 19 C 1.38715 * 120.25683 * 0.02995 * 17 16 15 20 20 C 1.38069 * 120.36336 * 359.97438 * 19 17 16 21 21 C 1.38739 * 120.10559 * 359.70333 * 20 19 17 22 22 N 1.39767 * 120.12865 * 180.29918 * 21 20 19 23 23 C 1.35839 * 126.10685 * 6.65490 * 22 21 20 24 24 C 1.35288 * 107.61881 * 179.97438 * 23 22 21 25 25 C 1.39948 * 107.96880 * 359.97438 * 24 23 22 26 26 N 1.30841 * 108.36799 * 359.72143 * 25 24 23 27 27 C 1.40667 * 107.83194 * 0.02562 * 11 10 9 28 28 N 1.30908 * 108.38397 * 359.97438 * 27 11 10 29 29 H 0.97002 * 120.00208 * 0.02562 * 1 2 3 30 30 H 1.07994 * 126.25051 * 359.97438 * 10 9 7 31 31 H 0.96997 * 119.99760 * 0.02562 * 12 11 10 32 32 H 1.08001 * 120.05074 * 359.95681 * 16 15 13 33 33 H 1.07994 * 119.82046 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.94672 * 179.97438 * 20 19 17 35 35 H 1.07998 * 126.18818 * 359.97438 * 23 22 21 36 36 H 1.08000 * 126.01708 * 180.02562 * 24 23 22 37 37 H 1.07999 * 125.81876 * 179.97438 * 25 24 23 38 38 H 1.07997 * 125.81063 * 179.73921 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4944 2.0465 -1.4000 5 1 1.4442 2.6527 0.7000 6 1 3.5444 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6404 0.0015 11 6 0.8578 -4.5385 0.0017 12 7 0.9889 -5.9377 0.0021 13 6 -0.1103 -6.7176 0.0018 14 8 -1.2156 -6.2104 0.0006 15 6 0.0274 -8.1870 0.0016 16 6 0.7820 -8.8214 0.9906 17 6 0.9065 -10.1963 0.9851 18 9 1.6370 -10.8097 1.9418 19 6 0.2852 -10.9504 0.0005 20 6 -0.4633 -10.3341 -0.9825 21 6 -0.6039 -8.9538 -0.9875 22 7 -1.3667 -8.3300 -1.9787 23 6 -2.1246 -8.9544 -2.9172 24 6 -2.6998 -7.9979 -3.6818 25 6 -2.2843 -6.7517 -3.1993 26 7 -1.4920 -6.9487 -2.1768 27 6 -0.3513 -3.8197 0.0002 28 7 -0.0715 -2.5409 -0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 2.9302 -3.8707 0.0021 31 1 1.8705 -6.3421 0.0027 32 1 1.2677 -8.2373 1.7583 33 1 0.3876 -12.0255 0.0027 34 1 -0.9438 -10.9278 -1.7461 35 1 -2.2460 -10.0214 -3.0322 36 1 -3.3635 -8.1664 -4.5169 37 1 -2.5720 -5.7909 -3.5998 38 1 -1.3420 -4.2497 -0.0040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793288644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:33 Heat of formation + Delta-G solvation = 140.920718 kcal Electronic energy + Delta-G solvation = -28336.130404 eV Core-core repulsion = 24098.328192 eV Total energy + Delta-G solvation = -4237.802212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.15325 -41.56757 -39.94430 -39.20164 -37.83294 -34.14714 -33.45869 -33.08409 -31.83569 -30.17219 -30.10379 -28.88417 -27.64851 -25.15601 -24.12338 -23.70980 -21.49484 -20.88255 -20.75971 -20.27530 -19.34336 -18.45767 -17.89008 -17.27796 -16.62826 -16.02719 -15.93148 -15.41432 -15.31623 -15.24509 -14.98909 -14.34632 -14.27867 -14.11473 -13.90632 -13.56270 -13.31403 -13.15101 -12.85603 -12.80638 -12.70183 -12.46964 -11.77304 -11.62037 -11.34728 -11.23514 -10.89463 -10.57063 -10.50400 -10.28723 -9.91379 -9.57462 -9.22911 -9.09412 -9.00122 -8.73459 -8.13328 -7.98198 -6.60916 -6.50781 -4.16711 0.37986 0.62728 2.00359 2.30185 2.81318 2.92595 3.04682 3.07516 3.12533 3.28507 3.55279 3.74189 3.87319 3.97161 4.19174 4.40177 4.52261 4.59304 4.60554 4.74819 4.97732 5.04777 5.07212 5.18644 5.40444 5.47491 5.58989 5.60260 5.65085 5.83401 5.95038 6.28165 6.31130 6.53527 6.62247 6.96028 7.01723 7.03933 7.20889 7.31733 7.69108 7.91894 8.25529 8.35708 8.70483 8.95213 9.44339 9.74592 10.45259 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003003 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.170488 B = 9322.944454 C =10881.095061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.933 3.067 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.051 4.051 12 N -0.617 5.617 13 C 0.552 3.448 14 O -0.493 6.493 15 C -0.094 4.094 16 C -0.102 4.102 17 C 0.082 3.918 18 F -0.135 7.135 19 C -0.112 4.112 20 C -0.122 4.122 21 C 0.199 3.801 22 N -0.335 5.335 23 C 0.036 3.964 24 C -0.250 4.250 25 C 0.047 3.953 26 N -0.224 5.224 27 C -0.027 4.027 28 N -0.261 5.261 29 H 0.274 0.726 30 H 0.144 0.856 31 H 0.394 0.606 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.188 0.812 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -21.060 -4.166 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.157 4.157 12 N -0.259 5.259 13 C 0.336 3.664 14 O -0.367 6.367 15 C -0.100 4.100 16 C -0.122 4.122 17 C 0.062 3.938 18 F -0.113 7.113 19 C -0.131 4.131 20 C -0.143 4.143 21 C 0.104 3.896 22 N -0.111 5.111 23 C -0.103 4.103 24 C -0.278 4.278 25 C -0.142 4.142 26 N -0.040 5.040 27 C -0.203 4.203 28 N -0.092 5.092 29 H 0.084 0.916 30 H 0.161 0.839 31 H 0.227 0.773 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.192 0.808 36 H 0.170 0.830 37 H 0.205 0.795 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.375 -18.817 -3.202 19.091 hybrid contribution 0.838 -0.976 -0.522 1.388 sum 0.464 -19.793 -3.724 20.145 Atomic orbital electron populations 1.70220 1.06083 1.27840 1.35594 1.25617 0.95684 1.00176 0.95572 0.85851 0.79394 0.80104 0.78919 1.19640 1.20131 1.18858 1.19841 0.91608 0.80611 1.53490 0.86745 1.44515 1.04044 1.03208 1.39401 1.21239 0.96759 0.85443 1.20168 1.17201 0.94295 0.80941 1.23257 1.42333 1.07653 1.04535 1.71413 1.17350 0.85097 0.84453 0.79533 1.90710 1.25333 1.73171 1.47479 1.19658 0.99566 0.95319 0.95431 1.21210 0.98616 0.93059 0.99269 1.17456 0.96470 0.90520 0.89319 1.91528 1.74988 1.83026 1.61765 1.20998 0.97495 1.00967 0.93673 1.20552 1.01783 0.91220 1.00764 1.17391 0.93211 0.90824 0.88187 1.46068 1.35990 1.05661 1.23423 1.22674 0.96268 0.99643 0.91755 1.21626 1.08846 0.91694 1.05630 1.24302 0.96587 0.99677 0.93667 1.78290 1.20309 0.88805 1.16646 1.24079 0.97999 0.90572 1.07637 1.78242 0.90082 1.15149 1.25755 0.91559 0.83867 0.77318 0.83128 0.83482 0.83792 0.80780 0.82966 0.79477 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.80 11.81 55.49 0.66 -21.15 16 2 C 0.05 1.21 5.50 -17.51 -0.10 1.12 16 3 Si 0.93 19.19 29.55 -169.99 -5.02 14.17 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.32 -8.69 10.25 -14.82 -0.15 -8.84 16 8 H 0.11 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 10 C -0.09 -2.05 11.49 -16.38 -0.19 -2.24 16 11 C -0.05 -1.22 6.90 -83.86 -0.58 -1.79 16 12 N -0.62 -11.58 5.44 -10.92 -0.06 -11.64 16 13 C 0.55 10.34 5.87 -12.45 -0.07 10.27 16 14 O -0.49 -11.04 11.67 5.26 0.06 -10.98 16 15 C -0.09 -1.36 5.65 -104.83 -0.59 -1.95 16 16 C -0.10 -1.18 9.72 -39.13 -0.38 -1.56 16 17 C 0.08 0.82 7.29 -39.47 -0.29 0.54 16 18 F -0.13 -1.38 17.26 2.25 0.04 -1.34 16 19 C -0.11 -0.89 10.01 -39.47 -0.39 -1.29 16 20 C -0.12 -1.07 9.45 -39.46 -0.37 -1.45 16 21 C 0.20 2.60 6.68 -83.33 -0.56 2.05 16 22 N -0.34 -4.85 3.78 -10.36 -0.04 -4.89 16 23 C 0.04 0.39 10.81 -16.83 -0.18 0.21 16 24 C -0.25 -2.81 10.80 -39.99 -0.43 -3.24 16 25 C 0.05 0.69 12.02 -17.33 -0.21 0.48 16 26 N -0.22 -4.01 8.21 30.64 0.25 -3.76 16 27 C -0.03 -0.73 10.85 -17.03 -0.18 -0.92 16 28 N -0.26 -7.70 10.39 30.80 0.32 -7.38 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.14 2.89 8.06 -52.49 -0.42 2.47 16 31 H 0.39 5.93 8.79 -40.82 -0.36 5.57 16 32 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.80 6.78 -52.49 -0.36 0.44 16 35 H 0.18 1.08 7.10 -52.49 -0.37 0.71 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.18 4.70 5.91 -52.49 -0.31 4.39 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -36.25 341.46 -6.43 -42.68 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.06 Total: 11.82 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.68 Total: -8.61 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.09 Total: -52.87 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.25 -6.43 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793288644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.598 kcal (2) G-P(sol) polarization free energy of solvation -36.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds