Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48498 * 109.47300 * 269.99695 * 3 2 1 5 5 H 1.48503 * 109.47302 * 29.99802 * 3 2 1 6 6 H 1.48504 * 109.47267 * 149.99458 * 3 2 1 7 7 C 1.38980 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.36498 * 126.06200 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50120 * 179.97438 * 10 9 7 12 12 N 1.40528 * 126.08659 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00297 * 180.02562 * 12 11 10 14 14 O 1.21616 * 119.99567 * 0.02562 * 13 12 11 15 15 C 1.47584 * 120.00184 * 179.97438 * 13 12 11 16 16 C 1.39643 * 120.17925 * 55.00132 * 15 13 12 17 17 C 1.38052 * 119.89244 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.87614 * 179.97438 * 17 16 15 19 19 C 1.38715 * 120.25683 * 0.02995 * 17 16 15 20 20 C 1.38069 * 120.36336 * 359.97438 * 19 17 16 21 21 C 1.38739 * 120.10559 * 359.70333 * 20 19 17 22 22 N 1.39767 * 120.12865 * 180.29918 * 21 20 19 23 23 C 1.35839 * 126.10685 * 6.65490 * 22 21 20 24 24 C 1.35288 * 107.61881 * 179.97438 * 23 22 21 25 25 C 1.39948 * 107.96880 * 359.97438 * 24 23 22 26 26 N 1.30841 * 108.36799 * 359.72143 * 25 24 23 27 27 C 1.40667 * 107.83194 * 0.02562 * 11 10 9 28 28 N 1.30908 * 108.38397 * 359.97438 * 27 11 10 29 29 H 0.97002 * 120.00208 * 0.02562 * 1 2 3 30 30 H 1.07994 * 126.25051 * 359.97438 * 10 9 7 31 31 H 0.96997 * 119.99760 * 0.02562 * 12 11 10 32 32 H 1.08001 * 120.05074 * 359.95681 * 16 15 13 33 33 H 1.07994 * 119.82046 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.94672 * 179.97438 * 20 19 17 35 35 H 1.07998 * 126.18818 * 359.97438 * 23 22 21 36 36 H 1.08000 * 126.01708 * 180.02562 * 24 23 22 37 37 H 1.07999 * 125.81876 * 179.97438 * 25 24 23 38 38 H 1.07997 * 125.81063 * 179.73921 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4944 2.0465 -1.4000 5 1 1.4442 2.6527 0.7000 6 1 3.5444 1.4403 0.7002 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6404 0.0015 11 6 0.8578 -4.5385 0.0017 12 7 0.9889 -5.9377 0.0021 13 6 -0.1103 -6.7176 0.0018 14 8 -1.2156 -6.2104 0.0006 15 6 0.0274 -8.1870 0.0016 16 6 0.7820 -8.8214 0.9906 17 6 0.9065 -10.1963 0.9851 18 9 1.6370 -10.8097 1.9418 19 6 0.2852 -10.9504 0.0005 20 6 -0.4633 -10.3341 -0.9825 21 6 -0.6039 -8.9538 -0.9875 22 7 -1.3667 -8.3300 -1.9787 23 6 -2.1246 -8.9544 -2.9172 24 6 -2.6998 -7.9979 -3.6818 25 6 -2.2843 -6.7517 -3.1993 26 7 -1.4920 -6.9487 -2.1768 27 6 -0.3513 -3.8197 0.0002 28 7 -0.0715 -2.5409 -0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 2.9302 -3.8707 0.0021 31 1 1.8705 -6.3421 0.0027 32 1 1.2677 -8.2373 1.7583 33 1 0.3876 -12.0255 0.0027 34 1 -0.9438 -10.9278 -1.7461 35 1 -2.2460 -10.0214 -3.0322 36 1 -3.3635 -8.1664 -4.5169 37 1 -2.5720 -5.7909 -3.5998 38 1 -1.3420 -4.2497 -0.0040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793288644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = 116.451133 kcal Electronic energy + Delta-G solvation = -28337.191484 eV Core-core repulsion = 24098.328192 eV Total energy + Delta-G solvation = -4238.863293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.94115 -42.54399 -41.65014 -40.55449 -39.13487 -35.88854 -34.97432 -34.34872 -32.85155 -32.14106 -31.07538 -29.90546 -29.39053 -26.94475 -25.35346 -24.57895 -22.96488 -22.52546 -21.70553 -21.47002 -21.17289 -19.62894 -19.15642 -18.70279 -17.58567 -17.46006 -17.11382 -16.90443 -16.59549 -16.23673 -16.08566 -15.78481 -15.77107 -15.20632 -14.99888 -14.87085 -14.77052 -14.70685 -14.22703 -13.78439 -13.57594 -13.50182 -13.41975 -13.28253 -12.90443 -12.86062 -12.53766 -12.09252 -11.91818 -11.36275 -11.21931 -10.93220 -10.84808 -10.72211 -10.31770 -10.07928 -10.04479 -9.04087 -8.49638 -8.46355 -6.22954 -0.51022 -0.16675 1.12808 1.25184 1.38849 1.41837 1.56542 1.59132 1.86929 1.91908 2.03867 2.25082 2.40037 2.61035 2.88118 3.09195 3.15414 3.31287 3.64353 3.73405 3.87141 4.02131 4.14435 4.24789 4.43542 4.50786 4.63416 4.67116 4.75553 4.84184 4.88425 4.98843 5.01117 5.06662 5.14207 5.29897 5.48610 5.52718 5.67712 5.96530 6.19008 6.33946 6.69202 6.73689 6.75703 7.42982 7.48323 7.70279 8.53182 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.003003 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.170488 B = 9322.944454 C =10881.095061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.355 4.355 8 H 0.140 0.860 9 N -0.167 5.167 10 C -0.085 4.085 11 C -0.035 4.035 12 N -0.614 5.614 13 C 0.554 3.446 14 O -0.535 6.535 15 C -0.124 4.124 16 C -0.103 4.103 17 C 0.082 3.918 18 F -0.134 7.134 19 C -0.085 4.085 20 C -0.103 4.103 21 C 0.177 3.823 22 N -0.346 5.346 23 C 0.049 3.951 24 C -0.254 4.254 25 C 0.025 3.975 26 N -0.296 5.296 27 C -0.051 4.051 28 N -0.309 5.309 29 H 0.276 0.724 30 H 0.184 0.816 31 H 0.413 0.587 32 H 0.151 0.849 33 H 0.191 0.809 34 H 0.189 0.811 35 H 0.230 0.770 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -24.838 -4.858 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.167 1.167 7 C -0.486 4.486 8 H 0.157 0.843 9 N 0.063 4.937 10 C -0.235 4.235 11 C -0.141 4.141 12 N -0.259 5.259 13 C 0.341 3.659 14 O -0.411 6.411 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.062 3.938 18 F -0.113 7.113 19 C -0.104 4.104 20 C -0.123 4.123 21 C 0.083 3.917 22 N -0.123 5.123 23 C -0.090 4.090 24 C -0.282 4.282 25 C -0.163 4.163 26 N -0.113 5.113 27 C -0.226 4.226 28 N -0.141 5.141 29 H 0.086 0.914 30 H 0.201 0.799 31 H 0.249 0.751 32 H 0.169 0.831 33 H 0.209 0.791 34 H 0.206 0.794 35 H 0.246 0.754 36 H 0.202 0.798 37 H 0.202 0.798 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.400 -22.660 -3.894 23.034 hybrid contribution 0.267 -0.081 -0.305 0.413 sum 1.667 -22.740 -4.198 23.185 Atomic orbital electron populations 1.70409 1.08441 1.29031 1.37425 1.26889 0.96482 1.04320 0.94142 0.84584 0.78275 0.74020 0.79242 1.18860 1.20143 1.16733 1.20608 0.92925 0.80943 1.54147 0.84311 1.44804 1.03608 1.04665 1.40581 1.21929 0.98614 0.84355 1.18646 1.17270 0.92890 0.83293 1.20661 1.42310 1.09128 1.02565 1.71889 1.18075 0.84081 0.86469 0.77293 1.90678 1.26975 1.74697 1.48706 1.19273 1.03113 0.92318 0.98256 1.21163 0.98290 0.94241 0.98601 1.17539 0.96564 0.89867 0.89835 1.91538 1.75044 1.82771 1.61952 1.21492 0.94669 1.02826 0.91446 1.21018 1.00735 0.89157 1.01414 1.17885 0.93471 0.92481 0.87911 1.46234 1.36764 1.04859 1.24413 1.23568 0.93934 1.01878 0.89604 1.22005 1.09405 0.90091 1.06694 1.24580 0.96711 1.01385 0.93659 1.78178 1.22798 0.91704 1.18649 1.24019 0.98734 0.90744 1.09116 1.78130 0.91947 1.16490 1.27568 0.91446 0.79858 0.75129 0.83102 0.79142 0.79417 0.75379 0.79805 0.79796 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.03 11.81 21.66 0.26 -48.78 16 2 C -0.01 -0.37 5.50 84.95 0.47 0.09 16 3 Si 1.02 39.73 29.55 68.60 2.03 41.76 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.24 -8.62 7.11 99.48 0.71 -7.92 16 7 C -0.36 -19.49 10.25 84.01 0.86 -18.63 16 8 H 0.14 6.62 7.83 -2.91 -0.02 6.59 16 9 N -0.17 -9.69 3.74 -190.01 -0.71 -10.40 16 10 C -0.09 -4.18 11.49 83.38 0.96 -3.22 16 11 C -0.04 -1.73 6.90 37.75 0.26 -1.47 16 12 N -0.61 -23.87 5.44 -306.72 -1.67 -25.54 16 13 C 0.55 21.75 5.87 86.71 0.51 22.26 16 14 O -0.53 -25.73 11.67 -4.08 -0.05 -25.77 16 15 C -0.12 -3.55 5.65 -20.00 -0.11 -3.67 16 16 C -0.10 -2.27 9.72 22.57 0.22 -2.05 16 17 C 0.08 1.37 7.29 22.34 0.16 1.53 16 18 F -0.13 -2.33 17.26 44.97 0.78 -1.56 16 19 C -0.09 -0.90 10.01 22.34 0.22 -0.68 16 20 C -0.10 -1.29 9.45 22.35 0.21 -1.08 16 21 C 0.18 4.30 6.68 38.47 0.26 4.55 16 22 N -0.35 -9.67 3.78 -186.71 -0.71 -10.38 16 23 C 0.05 0.92 10.81 83.39 0.90 1.82 16 24 C -0.25 -5.39 10.80 22.00 0.24 -5.15 16 25 C 0.02 0.77 12.02 85.25 1.02 1.80 16 26 N -0.30 -11.12 8.21 -56.97 -0.47 -11.59 16 27 C -0.05 -2.95 10.85 85.42 0.93 -2.02 16 28 N -0.31 -19.45 10.39 -56.46 -0.59 -20.04 16 29 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.18 7.22 8.06 -2.91 -0.02 7.19 16 31 H 0.41 12.53 8.79 -92.71 -0.81 11.72 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.19 0.69 6.78 -2.91 -0.02 0.67 16 35 H 0.23 1.42 7.10 -2.91 -0.02 1.40 16 36 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.19 5.34 8.06 -2.91 -0.02 5.32 16 38 H 0.16 9.60 5.91 -2.91 -0.02 9.58 16 Total: -1.00 -88.75 341.46 6.32 -82.43 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.34 Total: 35.78 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 7.11 Total: -5.91 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -3.88 Total: -126.73 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -88.75 6.32 -82.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793288644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.879 kcal (2) G-P(sol) polarization free energy of solvation -88.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds