Wall clock time and date at job start Sat Apr 11 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99464 * 2 1 4 4 H 1.48494 * 109.47126 * 90.00421 * 3 2 1 5 5 H 1.48510 * 109.46705 * 209.99881 * 3 2 1 6 6 H 1.48491 * 109.47295 * 329.99649 * 3 2 1 7 7 C 1.37873 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 186.56422 * 7 2 1 9 9 C 1.50705 * 120.00048 * 6.57206 * 7 2 1 10 10 H 1.08998 * 109.46987 * 30.07167 * 9 7 2 11 11 C 1.52989 * 109.47254 * 150.07587 * 9 7 2 12 12 C 1.50699 * 109.47663 * 294.05457 * 11 9 7 13 13 O 1.20831 * 119.99606 * 359.97438 * 12 11 9 14 14 O 1.34226 * 120.00935 * 180.02562 * 12 11 9 15 15 C 1.45197 * 117.00347 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46882 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46946 * 180.02562 * 16 15 14 18 18 S 1.81397 * 109.46984 * 179.97438 * 17 16 15 19 19 N 1.65599 * 104.44824 * 180.02562 * 18 17 16 20 20 O 1.42104 * 110.54349 * 291.62417 * 18 17 16 21 21 O 1.42097 * 110.54396 * 68.37472 * 18 17 16 22 22 C 1.50704 * 109.46723 * 270.07635 * 9 7 2 23 23 C 1.38229 * 119.99815 * 304.29477 * 22 9 7 24 24 C 1.38236 * 120.00027 * 179.81055 * 23 22 9 25 25 C 1.38238 * 119.99727 * 0.39709 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86220 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 0.97003 * 119.99363 * 174.72509 * 1 2 3 29 29 H 1.09009 * 109.47245 * 54.05583 * 11 9 7 30 30 H 1.09001 * 109.47174 * 174.05434 * 11 9 7 31 31 H 1.08999 * 109.47079 * 299.99777 * 15 14 12 32 32 H 1.09002 * 109.46951 * 60.00181 * 15 14 12 33 33 H 1.08999 * 109.47124 * 299.99802 * 16 15 14 34 34 H 1.09000 * 109.47423 * 59.99887 * 16 15 14 35 35 H 1.08999 * 109.47044 * 299.99847 * 17 16 15 36 36 H 1.09000 * 109.47155 * 59.99719 * 17 16 15 37 37 H 0.96998 * 120.00008 * 150.00342 * 19 18 17 38 38 H 0.97003 * 119.99750 * 329.99437 * 19 18 17 39 39 H 1.08006 * 120.00398 * 0.02562 * 23 22 9 40 40 H 1.08004 * 120.00446 * 180.23518 * 24 23 22 41 41 H 1.08006 * 119.99774 * 179.82936 * 25 24 23 42 42 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6526 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1970 0.1075 9 6 1.2586 -2.4950 -0.1483 10 1 0.3621 -2.3333 -0.7468 11 6 2.1565 -3.5214 -0.8416 12 6 2.4285 -3.0771 -2.2557 13 8 1.9524 -2.0455 -2.6670 14 8 3.1986 -3.8278 -3.0589 15 6 3.4182 -3.3380 -4.4079 16 6 4.3137 -4.3191 -5.1673 17 6 4.5456 -3.8026 -6.5887 18 16 5.6078 -4.9654 -7.4887 19 7 5.7762 -4.2923 -8.9923 20 8 6.9236 -4.9567 -6.9521 21 8 4.9215 -6.1868 -7.7258 22 6 0.8675 -3.0083 1.2136 23 6 1.8340 -3.2034 2.1824 24 6 1.4748 -3.6705 3.4329 25 6 0.1501 -3.9503 3.7119 26 6 -0.8157 -3.7602 2.7413 27 6 -0.4570 -3.2893 1.4922 28 1 -0.4849 -0.8366 -0.0772 29 1 3.0986 -3.6050 -0.2996 30 1 1.6577 -4.4904 -0.8548 31 1 2.4612 -3.2467 -4.9216 32 1 3.9026 -2.3624 -4.3659 33 1 5.2706 -4.4099 -4.6534 34 1 3.8298 -5.2949 -5.2093 35 1 3.5888 -3.7114 -7.1028 36 1 5.0297 -2.8269 -6.5463 37 1 6.5863 -4.4443 -9.5038 38 1 5.0647 -3.7462 -9.3617 39 1 2.8694 -2.9876 1.9635 40 1 2.2294 -3.8194 4.1911 41 1 -0.1302 -4.3178 4.6880 42 1 -1.8506 -3.9791 2.9592 43 1 -1.2116 -3.1404 0.7341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795993538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:55 Heat of formation + Delta-G solvation = -150.592014 kcal Electronic energy + Delta-G solvation = -26696.147631 eV Core-core repulsion = 22640.023232 eV Total energy + Delta-G solvation = -4056.124399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93718 -38.54255 -37.38028 -36.49046 -36.28503 -34.44676 -34.22611 -33.61982 -31.47566 -30.16226 -29.29044 -27.45744 -25.21406 -23.17692 -22.26863 -21.74287 -20.78118 -19.83513 -19.60169 -18.05636 -17.70432 -17.17563 -16.89625 -16.78337 -16.16056 -16.02340 -15.78341 -15.29351 -14.88836 -14.36546 -14.19503 -13.74132 -13.40562 -13.30123 -13.07822 -12.77724 -12.54352 -12.50539 -12.44661 -12.42342 -12.32094 -12.06953 -11.74407 -11.66511 -11.48388 -11.17065 -11.06735 -10.79351 -10.78135 -10.49314 -10.27185 -10.24119 -10.12546 -9.78496 -9.67974 -8.75574 -8.38653 -8.18564 -7.71590 -6.34406 -4.03779 -0.18052 2.14300 2.18226 2.44677 2.96219 2.99923 3.34768 3.43233 3.48398 3.62151 3.86477 4.17411 4.43203 4.52540 4.59666 4.62457 4.92094 5.08575 5.26524 5.36043 5.48449 5.54327 5.56026 5.57888 5.59027 5.71010 5.77053 5.90745 5.95135 6.09429 6.25749 6.33580 6.51999 6.59102 6.72020 6.83305 6.96916 7.08152 7.17833 7.31230 7.62002 7.79445 8.09062 8.39380 8.50155 8.86164 9.66328 11.05784 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002361 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.704290 B =11854.827437 C =13151.501771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.577 4.577 8 H 0.048 0.952 9 C 0.068 3.932 10 H 0.053 0.947 11 C -0.090 4.090 12 C 0.459 3.541 13 O -0.470 6.470 14 O -0.373 6.373 15 C 0.074 3.926 16 C -0.112 4.112 17 C -0.624 4.624 18 S 2.621 3.379 19 N -1.252 6.252 20 O -0.960 6.960 21 O -0.959 6.959 22 C -0.033 4.033 23 C -0.107 4.107 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.124 4.124 27 C -0.128 4.128 28 H 0.271 0.729 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.420 0.580 38 H 0.413 0.587 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -8.922 -12.103 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.615 4.615 8 H 0.067 0.933 9 C 0.049 3.951 10 H 0.071 0.929 11 C -0.128 4.128 12 C 0.300 3.700 13 O -0.353 6.353 14 O -0.292 6.292 15 C -0.001 4.001 16 C -0.151 4.151 17 C -0.753 4.753 18 S 2.712 3.288 19 N -0.924 5.924 20 O -0.950 6.950 21 O -0.948 6.948 22 C -0.034 4.034 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.250 0.750 38 H 0.240 0.760 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.626 -7.843 -11.731 16.040 hybrid contribution -0.209 -0.500 -0.482 0.725 sum 7.417 -8.343 -12.213 16.546 Atomic orbital electron populations 1.70740 1.06873 1.31236 1.44941 1.25625 0.96413 1.02305 0.92936 0.83582 0.74830 0.75524 0.76502 1.21633 1.21625 1.21043 1.21602 0.94049 0.90551 1.55252 0.93345 1.17947 0.96035 0.92893 0.88186 0.92908 1.21515 1.02934 1.00520 0.87803 1.23972 0.75360 0.82255 0.88407 1.90709 1.47011 1.22842 1.74707 1.86497 1.66237 1.52573 1.23902 1.22719 0.99555 0.97037 0.80838 1.21192 1.02654 1.00475 0.90766 1.30447 1.17303 1.18232 1.09320 1.04577 0.75181 0.75182 0.73856 1.53225 1.30161 1.71307 1.37738 1.93623 1.35950 1.86674 1.78707 1.93636 1.76441 1.41094 1.83593 1.20689 0.92439 0.91577 0.98655 1.20929 0.99716 0.99028 0.92816 1.21023 0.95847 1.00941 0.96863 1.20849 0.93537 1.03788 0.98694 1.20966 0.98427 1.00808 0.94023 1.21051 0.96342 1.00501 0.96760 0.91769 0.88958 0.90279 0.91154 0.90934 0.88897 0.88982 0.84410 0.84093 0.74990 0.76045 0.86606 0.87325 0.87493 0.87373 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.63 55.43 0.76 -26.00 16 2 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 3 Si 1.07 25.53 29.91 -169.99 -5.08 20.44 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.58 -15.21 6.41 -34.44 -0.22 -15.43 16 8 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 9 C 0.07 1.58 1.31 -92.92 -0.12 1.46 16 10 H 0.05 1.36 6.23 -51.93 -0.32 1.04 16 11 C -0.09 -1.73 5.05 -27.89 -0.14 -1.87 16 12 C 0.46 9.14 7.71 36.01 0.28 9.42 16 13 O -0.47 -11.08 14.77 -18.75 -0.28 -11.35 16 14 O -0.37 -6.14 10.22 -39.25 -0.40 -6.54 16 15 C 0.07 0.96 5.47 37.16 0.20 1.17 16 16 C -0.11 -1.05 5.60 -26.73 -0.15 -1.20 16 17 C -0.62 -3.68 6.17 37.16 0.23 -3.45 16 18 S 2.62 18.91 5.97 -107.50 -0.64 18.27 16 19 N -1.25 -4.76 9.36 60.35 0.57 -4.20 16 20 O -0.96 -10.68 18.10 -57.54 -1.04 -11.72 16 21 O -0.96 -10.71 18.10 -57.54 -1.04 -11.75 16 22 C -0.03 -0.71 4.77 -104.63 -0.50 -1.21 16 23 C -0.11 -2.12 8.88 -39.59 -0.35 -2.48 16 24 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 25 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 26 C -0.12 -2.22 10.05 -39.59 -0.40 -2.62 16 27 C -0.13 -2.61 9.67 -39.59 -0.38 -2.99 16 28 H 0.27 7.91 6.68 -40.82 -0.27 7.64 16 29 H 0.09 1.67 7.87 -51.92 -0.41 1.26 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.14 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.42 1.28 8.96 -34.47 -0.31 0.97 16 38 H 0.41 0.47 8.96 -34.47 -0.31 0.16 16 39 H 0.12 2.23 7.80 -52.48 -0.41 1.83 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 2.20 7.95 -52.49 -0.42 1.78 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -38.38 381.45 -9.75 -48.13 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.88 Total: 2.95 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.45 Total: -23.97 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 1.32 Total: -30.19 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -2.76 Total: -41.37 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Atomic # 16 Polarization: 18.91 SS G_CDS: -0.64 Total: 18.27 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.38 -9.75 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795993538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.463 kcal (2) G-P(sol) polarization free energy of solvation -38.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds