Wall clock time and date at job start Sat Apr 11 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99464 * 2 1 4 4 H 1.48494 * 109.47126 * 90.00421 * 3 2 1 5 5 H 1.48510 * 109.46705 * 209.99881 * 3 2 1 6 6 H 1.48491 * 109.47295 * 329.99649 * 3 2 1 7 7 C 1.37873 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 186.56422 * 7 2 1 9 9 C 1.50705 * 120.00048 * 6.57206 * 7 2 1 10 10 H 1.08998 * 109.46987 * 30.07167 * 9 7 2 11 11 C 1.52989 * 109.47254 * 150.07587 * 9 7 2 12 12 C 1.50699 * 109.47663 * 294.05457 * 11 9 7 13 13 O 1.20831 * 119.99606 * 359.97438 * 12 11 9 14 14 O 1.34226 * 120.00935 * 180.02562 * 12 11 9 15 15 C 1.45197 * 117.00347 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46882 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46946 * 180.02562 * 16 15 14 18 18 S 1.81397 * 109.46984 * 179.97438 * 17 16 15 19 19 N 1.65599 * 104.44824 * 180.02562 * 18 17 16 20 20 O 1.42104 * 110.54349 * 291.62417 * 18 17 16 21 21 O 1.42097 * 110.54396 * 68.37472 * 18 17 16 22 22 C 1.50704 * 109.46723 * 270.07635 * 9 7 2 23 23 C 1.38229 * 119.99815 * 304.29477 * 22 9 7 24 24 C 1.38236 * 120.00027 * 179.81055 * 23 22 9 25 25 C 1.38238 * 119.99727 * 0.39709 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86220 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 0.97003 * 119.99363 * 174.72509 * 1 2 3 29 29 H 1.09009 * 109.47245 * 54.05583 * 11 9 7 30 30 H 1.09001 * 109.47174 * 174.05434 * 11 9 7 31 31 H 1.08999 * 109.47079 * 299.99777 * 15 14 12 32 32 H 1.09002 * 109.46951 * 60.00181 * 15 14 12 33 33 H 1.08999 * 109.47124 * 299.99802 * 16 15 14 34 34 H 1.09000 * 109.47423 * 59.99887 * 16 15 14 35 35 H 1.08999 * 109.47044 * 299.99847 * 17 16 15 36 36 H 1.09000 * 109.47155 * 59.99719 * 17 16 15 37 37 H 0.96998 * 120.00008 * 150.00342 * 19 18 17 38 38 H 0.97003 * 119.99750 * 329.99437 * 19 18 17 39 39 H 1.08006 * 120.00398 * 0.02562 * 23 22 9 40 40 H 1.08004 * 120.00446 * 180.23518 * 24 23 22 41 41 H 1.08006 * 119.99774 * 179.82936 * 25 24 23 42 42 H 1.07995 * 119.99599 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6526 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1970 0.1075 9 6 1.2586 -2.4950 -0.1483 10 1 0.3621 -2.3333 -0.7468 11 6 2.1565 -3.5214 -0.8416 12 6 2.4285 -3.0771 -2.2557 13 8 1.9524 -2.0455 -2.6670 14 8 3.1986 -3.8278 -3.0589 15 6 3.4182 -3.3380 -4.4079 16 6 4.3137 -4.3191 -5.1673 17 6 4.5456 -3.8026 -6.5887 18 16 5.6078 -4.9654 -7.4887 19 7 5.7762 -4.2923 -8.9923 20 8 6.9236 -4.9567 -6.9521 21 8 4.9215 -6.1868 -7.7258 22 6 0.8675 -3.0083 1.2136 23 6 1.8340 -3.2034 2.1824 24 6 1.4748 -3.6705 3.4329 25 6 0.1501 -3.9503 3.7119 26 6 -0.8157 -3.7602 2.7413 27 6 -0.4570 -3.2893 1.4922 28 1 -0.4849 -0.8366 -0.0772 29 1 3.0986 -3.6050 -0.2996 30 1 1.6577 -4.4904 -0.8548 31 1 2.4612 -3.2467 -4.9216 32 1 3.9026 -2.3624 -4.3659 33 1 5.2706 -4.4099 -4.6534 34 1 3.8298 -5.2949 -5.2093 35 1 3.5888 -3.7114 -7.1028 36 1 5.0297 -2.8269 -6.5463 37 1 6.5863 -4.4443 -9.5038 38 1 5.0647 -3.7462 -9.3617 39 1 2.8694 -2.9876 1.9635 40 1 2.2294 -3.8194 4.1911 41 1 -0.1302 -4.3178 4.6880 42 1 -1.8506 -3.9791 2.9592 43 1 -1.2116 -3.1404 0.7341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795993538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:53 Heat of formation + Delta-G solvation = -178.496445 kcal Electronic energy + Delta-G solvation = -26697.357658 eV Core-core repulsion = 22640.023232 eV Total energy + Delta-G solvation = -4057.334425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.45935 -40.03342 -38.11356 -37.87880 -37.02779 -36.13949 -35.20247 -34.02501 -33.37112 -31.61605 -30.75307 -28.49661 -26.97680 -24.88426 -23.29669 -23.08907 -22.23196 -21.30595 -20.37083 -18.89605 -18.78418 -18.40134 -18.18589 -17.84551 -17.37728 -17.14295 -17.00449 -16.18998 -16.14315 -15.71683 -15.64642 -15.60267 -14.82712 -14.44674 -14.22283 -14.08080 -13.97074 -13.83327 -13.52135 -13.24130 -13.20389 -13.19110 -13.08808 -12.84202 -12.81048 -12.63475 -12.43116 -12.09345 -11.97731 -11.85808 -11.76074 -11.54053 -11.52018 -11.34675 -11.18678 -10.69133 -10.40919 -9.64477 -9.30331 -8.49005 -6.16816 -0.77387 0.67405 0.71620 1.38326 1.48909 1.58783 1.68758 1.72972 2.01175 2.58751 2.71604 3.09094 3.34028 3.35568 3.47639 3.72120 3.74087 4.07263 4.10949 4.16942 4.25095 4.27935 4.34089 4.37509 4.45018 4.53619 4.57870 4.73109 4.74551 4.83272 4.87338 5.02176 5.18891 5.28666 5.36170 5.38963 5.49157 5.74450 5.80596 5.90321 6.19042 6.27622 6.36677 6.38108 6.73148 6.96708 7.59464 8.91284 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002361 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.704290 B =11854.827437 C =13151.501771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.021 4.021 3 Si 1.102 2.898 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.569 4.569 8 H 0.043 0.957 9 C 0.071 3.929 10 H 0.015 0.985 11 C -0.088 4.088 12 C 0.463 3.537 13 O -0.515 6.515 14 O -0.367 6.367 15 C 0.064 3.936 16 C -0.117 4.117 17 C -0.612 4.612 18 S 2.644 3.356 19 N -1.237 6.237 20 O -1.001 7.001 21 O -1.001 7.001 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.150 4.150 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.426 0.574 38 H 0.428 0.572 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.509 -9.631 -11.380 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.220 4.220 3 Si 0.926 3.074 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.607 4.607 8 H 0.061 0.939 9 C 0.052 3.948 10 H 0.033 0.967 11 C -0.126 4.126 12 C 0.307 3.693 13 O -0.402 6.402 14 O -0.285 6.285 15 C -0.011 4.011 16 C -0.155 4.155 17 C -0.743 4.743 18 S 2.736 3.264 19 N -0.915 5.915 20 O -0.991 6.991 21 O -0.990 6.990 22 C -0.058 4.058 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.168 4.168 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.184 0.816 36 H 0.182 0.818 37 H 0.258 0.742 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.579 -8.599 -11.030 16.407 hybrid contribution -0.491 -0.376 -0.730 0.957 sum 8.089 -8.975 -11.759 16.860 Atomic orbital electron populations 1.70830 1.07800 1.30616 1.48335 1.26757 0.96576 1.05578 0.93075 0.83122 0.74304 0.72657 0.77269 1.20119 1.20257 1.21579 1.21860 0.93813 0.91960 1.53047 0.93905 1.17773 0.94767 0.92963 0.89301 0.96661 1.21442 1.03072 1.00490 0.87583 1.24037 0.74821 0.81614 0.88872 1.90694 1.48948 1.24836 1.75702 1.86466 1.64883 1.51732 1.25424 1.23098 1.00678 0.98138 0.79207 1.21255 1.02008 1.00007 0.92269 1.30345 1.18615 1.18363 1.06933 1.03605 0.73980 0.74701 0.74104 1.52823 1.31024 1.71147 1.36502 1.93570 1.38357 1.87350 1.79843 1.93591 1.76967 1.44064 1.84399 1.20519 0.93535 0.93784 0.97962 1.21030 0.99334 0.99983 0.93720 1.21413 0.97194 0.99281 0.96400 1.21326 0.92890 1.01988 0.99895 1.21305 1.00335 0.99664 0.93009 1.21130 0.95768 1.01890 0.98058 0.92967 0.87496 0.87725 0.90687 0.91116 0.88655 0.88380 0.81578 0.81819 0.74213 0.74226 0.86679 0.83977 0.83592 0.84651 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.63 21.45 0.29 -57.46 16 2 C -0.02 -1.19 5.45 84.65 0.46 -0.73 16 3 Si 1.10 52.11 29.91 68.60 2.05 54.16 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.57 -30.70 6.41 25.60 0.16 -30.54 16 8 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 9 C 0.07 3.39 1.31 -12.29 -0.02 3.37 16 10 H 0.02 0.83 6.23 -2.39 -0.01 0.82 16 11 C -0.09 -3.43 5.05 29.84 0.15 -3.28 16 12 C 0.46 18.71 7.71 71.24 0.55 19.26 16 13 O -0.52 -25.06 14.77 21.95 0.32 -24.74 16 14 O -0.37 -11.94 10.22 -51.38 -0.53 -12.46 16 15 C 0.06 1.60 5.47 71.98 0.39 2.00 16 16 C -0.12 -2.02 5.60 30.60 0.17 -1.85 16 17 C -0.61 -5.80 6.17 71.98 0.44 -5.35 16 18 S 2.64 34.98 5.97 -56.49 -0.34 34.64 16 19 N -1.24 -7.09 9.36 37.02 0.35 -6.74 16 20 O -1.00 -21.72 18.10 -127.65 -2.31 -24.03 16 21 O -1.00 -21.76 18.10 -127.65 -2.31 -24.07 16 22 C -0.06 -2.50 4.77 -19.87 -0.09 -2.60 16 23 C -0.12 -4.75 8.88 22.27 0.20 -4.55 16 24 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 25 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 27 C -0.15 -6.17 9.67 22.27 0.22 -5.96 16 28 H 0.26 16.05 6.68 -92.71 -0.62 15.43 16 29 H 0.11 3.82 7.87 -2.38 -0.02 3.80 16 30 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.43 1.90 8.96 -96.75 -0.87 1.03 16 38 H 0.43 -0.10 8.96 -96.74 -0.87 -0.97 16 39 H 0.12 4.35 7.80 -2.91 -0.02 4.33 16 40 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 43 H 0.10 4.15 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -86.28 381.45 0.30 -85.99 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.54 Total: 16.85 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 3.31 Total: -42.13 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.64 Total: -64.20 kcal Atomic # 8 Polarization: -80.48 SS G_CDS: -4.82 Total: -85.30 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Atomic # 16 Polarization: 34.98 SS G_CDS: -0.34 Total: 34.64 kcal Total: -86.28 0.30 -85.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795993538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.511 kcal (2) G-P(sol) polarization free energy of solvation -86.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds