Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99493 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00153 * 3 2 1 6 6 H 1.48500 * 109.47148 * 59.99944 * 3 2 1 7 7 C 1.38795 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99630 * 180.27659 * 7 2 1 9 9 S 1.76199 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47422 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47388 * 179.97438 * 12 11 10 14 14 C 1.34227 * 116.99873 * 179.97438 * 13 12 11 15 15 O 1.20826 * 120.00389 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99569 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.28596 * 300.69619 * 16 14 13 18 18 C 1.54251 * 110.32544 * 62.82881 * 16 14 13 19 19 C 1.54378 * 105.06330 * 118.89304 * 18 16 14 20 20 N 1.48568 * 104.59066 * 23.85130 * 19 18 16 21 21 C 1.46897 * 110.99756 * 200.95658 * 20 19 18 22 22 C 1.53006 * 109.47696 * 290.12942 * 21 20 19 23 23 F 1.39898 * 109.47001 * 59.99962 * 22 21 20 24 24 F 1.39893 * 109.47175 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.46821 * 300.00338 * 22 21 20 26 26 C 1.48712 * 104.28997 * 320.57503 * 20 19 18 27 27 H 0.96991 * 120.00676 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 29 29 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 30 30 H 1.09000 * 109.46890 * 300.00196 * 11 10 9 31 31 H 1.08997 * 109.47255 * 59.99806 * 11 10 9 32 32 H 1.09000 * 109.47093 * 299.99882 * 12 11 10 33 33 H 1.09005 * 109.47064 * 59.99876 * 12 11 10 34 34 H 1.08997 * 110.32265 * 237.79311 * 18 16 14 35 35 H 1.09000 * 110.32587 * 359.89819 * 18 16 14 36 36 H 1.08997 * 110.41287 * 142.63120 * 19 18 16 37 37 H 1.09003 * 110.41397 * 265.07688 * 19 18 16 38 38 H 1.08997 * 109.47411 * 50.13262 * 21 20 19 39 39 H 1.09002 * 109.47383 * 170.12796 * 21 20 19 40 40 H 1.09003 * 110.38907 * 280.64249 * 26 20 19 41 41 H 1.08998 * 110.50768 * 158.14962 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 0.0040 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9797 -5.3242 -0.0012 12 6 3.1518 -6.3076 -0.0005 13 8 2.6427 -7.6674 -0.0005 14 6 3.5492 -8.6574 -0.0005 15 8 4.7289 -8.3964 -0.0001 16 6 3.0953 -10.0945 0.0000 17 1 2.4841 -10.2974 0.8795 18 6 2.3037 -10.4069 -1.2864 19 6 3.1104 -11.5164 -1.9945 20 7 3.8848 -12.1681 -0.9069 21 6 5.0457 -12.8888 -1.4463 22 6 4.5675 -14.1162 -2.2247 23 9 3.7416 -13.7081 -3.2776 24 9 5.6731 -14.8028 -2.7379 25 9 3.8505 -14.9603 -1.3699 26 6 4.3139 -11.0416 -0.0361 27 1 -0.4851 0.8399 0.0004 28 1 3.1247 -3.7312 -0.8905 29 1 3.1247 -3.7311 0.8895 30 1 1.3708 -5.4845 0.8886 31 1 1.3714 -5.4840 -0.8913 32 1 3.7610 -6.1473 -0.8901 33 1 3.7598 -6.1476 0.8899 34 1 1.3044 -10.7648 -1.0385 35 1 2.2417 -9.5203 -1.9176 36 1 2.4382 -12.2338 -2.4651 37 1 3.7841 -11.0836 -2.7341 38 1 5.6043 -12.2312 -2.1123 39 1 5.6892 -13.2068 -0.6261 40 1 5.1766 -10.5347 -0.4684 41 1 4.5460 -11.4010 0.9665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805549728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -249.170086 kcal Electronic energy + Delta-G solvation = -26560.591932 eV Core-core repulsion = 21958.336127 eV Total energy + Delta-G solvation = -4602.255805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.50891 -48.07577 -47.93296 -41.01821 -39.14245 -36.80646 -33.91434 -33.36436 -32.47674 -29.70721 -28.94888 -26.68945 -25.51919 -23.94893 -23.10460 -21.90614 -21.40990 -20.45161 -19.01399 -18.89340 -18.21198 -17.64720 -17.42141 -17.07551 -16.70430 -16.19091 -15.37466 -15.02713 -14.85279 -14.79196 -14.69728 -14.67862 -14.42208 -14.29059 -14.13819 -14.11312 -13.79170 -13.42425 -13.19975 -12.86029 -12.81005 -12.39978 -12.17171 -12.07570 -11.92201 -11.81715 -11.45097 -11.31894 -11.20520 -11.05554 -10.93524 -10.72587 -10.54173 -10.36937 -9.66616 -9.36118 -9.11787 -8.39442 -6.60348 -6.28269 -3.99574 1.95198 2.14336 2.40179 3.03592 3.18007 3.19895 3.27205 3.31592 3.50032 3.55378 3.76700 3.96817 4.12624 4.16501 4.37991 4.53582 4.63172 4.67006 4.75775 4.84387 5.03173 5.08301 5.08545 5.11337 5.23234 5.33640 5.38471 5.40757 5.41382 5.56111 5.71007 5.82412 5.95116 6.01418 6.10146 6.34410 6.38991 6.61113 7.53476 7.56011 8.31593 9.18311 10.79936 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.001510 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.765367 B =18536.887841 C =18652.110943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.350 6.350 14 C 0.467 3.533 15 O -0.510 6.510 16 C -0.088 4.088 17 H 0.124 0.876 18 C -0.112 4.112 19 C 0.018 3.982 20 N -0.505 5.505 21 C -0.002 4.002 22 C 0.460 3.540 23 F -0.182 7.182 24 F -0.184 7.184 25 F -0.173 7.173 26 C 0.046 3.954 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -29.289 -2.791 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.266 6.266 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.107 4.107 17 H 0.142 0.858 18 C -0.150 4.150 19 C -0.109 4.109 20 N -0.230 5.230 21 C -0.133 4.133 22 C 0.405 3.595 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.154 7.154 26 C -0.080 4.080 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.329 -29.658 -2.521 30.654 hybrid contribution 2.464 1.781 -0.540 3.088 sum 9.793 -27.877 -3.062 29.706 Atomic orbital electron populations 1.70021 1.05925 1.27353 1.47141 1.25021 0.95099 0.99144 0.94496 0.86093 0.79640 0.81741 0.77933 1.19590 1.20522 1.20517 1.22740 0.94627 0.90661 1.58665 0.90784 1.84662 1.08714 0.99253 1.96880 1.23183 1.03488 0.96352 1.03327 1.21285 0.96392 0.91550 1.04376 1.23314 0.97852 0.76488 1.02617 1.86481 1.40078 1.16952 1.83124 1.23394 0.84637 0.88694 0.72352 1.90667 1.18666 1.84977 1.45542 1.21724 0.98760 0.87428 1.02818 0.85777 1.22307 0.99707 0.98819 0.94172 1.23545 0.97573 0.96637 0.93144 1.65400 1.17689 1.23487 1.16382 1.23409 0.94973 0.93750 1.01146 1.20354 0.75324 0.85613 0.78209 1.93173 1.73335 1.90155 1.59735 1.93198 1.53586 1.81740 1.87982 1.93217 1.78884 1.73350 1.69970 1.23135 0.96274 0.89425 0.99208 0.92265 0.91760 0.91734 0.90284 0.90313 0.91156 0.91074 0.88861 0.89768 0.88191 0.92631 0.89592 0.85851 0.90755 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.65 9.50 30.94 0.29 -14.35 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.12 -3.15 21.44 -107.50 -2.30 -5.45 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 12 C 0.07 0.98 5.47 37.16 0.20 1.18 16 13 O -0.35 -4.36 10.21 -39.25 -0.40 -4.76 16 14 C 0.47 5.22 7.04 36.01 0.25 5.47 16 15 O -0.51 -6.98 15.19 -18.75 -0.28 -7.27 16 16 C -0.09 -0.66 3.55 -90.39 -0.32 -0.98 16 17 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.11 -0.75 6.63 -25.35 -0.17 -0.92 16 19 C 0.02 0.12 5.20 -2.18 -0.01 0.11 16 20 N -0.51 -3.30 5.29 -229.83 -1.22 -4.52 16 21 C 0.00 -0.01 4.94 -3.82 -0.02 -0.03 16 22 C 0.46 3.12 3.27 37.16 0.12 3.24 16 23 F -0.18 -1.39 14.53 2.25 0.03 -1.36 16 24 F -0.18 -1.33 17.32 2.25 0.04 -1.29 16 25 F -0.17 -1.42 17.24 2.25 0.04 -1.38 16 26 C 0.05 0.31 5.83 -2.09 -0.01 0.30 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 29 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 36 H 0.10 0.65 6.73 -51.93 -0.35 0.30 16 37 H 0.06 0.36 7.82 -51.93 -0.41 -0.05 16 38 H 0.09 0.38 7.88 -51.93 -0.41 -0.03 16 39 H 0.12 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.07 0.58 6.77 -51.93 -0.35 0.23 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -32.13 367.91 -8.22 -40.36 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.69 Total: -3.49 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.31 Total: -7.77 kcal Atomic # 7 Polarization: -28.90 SS G_CDS: -0.48 Total: -29.38 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.69 Total: -12.03 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.11 Total: -4.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.13 -8.22 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805549728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.814 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds