Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48502 * 109.47145 * 5.02096 * 3 2 1 5 5 H 1.48500 * 109.46893 * 125.02028 * 3 2 1 6 6 H 1.48499 * 109.47262 * 245.01943 * 3 2 1 7 7 C 1.39011 * 119.99696 * 179.72801 * 2 1 3 8 8 H 1.08005 * 119.99951 * 183.50730 * 7 2 1 9 9 N 1.36894 * 120.00174 * 3.50502 * 7 2 1 10 10 C 1.38211 * 125.61743 * 126.97502 * 9 7 2 11 11 C 1.46890 * 125.43707 * 0.02562 * 10 9 7 12 12 O 1.21667 * 119.99954 * 185.52603 * 11 10 9 13 13 N 1.34772 * 120.00046 * 5.52510 * 11 10 9 14 14 N 1.40105 * 120.00026 * 184.59200 * 13 11 10 15 15 C 1.38675 * 119.99935 * 185.10760 * 14 13 11 16 16 N 1.32926 * 120.54323 * 5.09108 * 15 14 13 17 17 C 1.31782 * 120.71333 * 179.97438 * 16 15 14 18 18 N 1.31754 * 121.88082 * 0.02562 * 17 16 15 19 19 C 1.32575 * 121.02502 * 359.97438 * 18 17 16 20 20 C 1.38281 * 119.16892 * 359.74184 * 19 18 17 21 21 F 1.35097 * 120.85624 * 180.27508 * 20 19 18 22 22 C 1.36124 * 109.12631 * 180.02562 * 10 9 7 23 23 C 1.41702 * 107.74621 * 359.97438 * 22 10 9 24 24 C 1.40026 * 133.35003 * 180.02562 * 23 22 10 25 25 C 1.36586 * 119.82892 * 179.19798 * 24 23 22 26 26 C 1.38850 * 120.59728 * 0.67928 * 25 24 23 27 27 C 1.37848 * 120.63658 * 359.54579 * 26 25 24 28 28 C 1.37836 * 125.62211 * 306.67111 * 9 7 2 29 29 H 0.96999 * 120.00041 * 174.45974 * 1 2 3 30 30 H 0.96997 * 120.00326 * 4.58893 * 13 11 10 31 31 H 0.96999 * 119.99817 * 5.10563 * 14 13 11 32 32 H 1.08000 * 119.06051 * 179.97438 * 17 16 15 33 33 H 1.07995 * 120.41681 * 180.02562 * 19 18 17 34 34 H 1.07997 * 126.12459 * 180.02562 * 22 10 9 35 35 H 1.07997 * 120.08271 * 359.93835 * 24 23 22 36 36 H 1.07998 * 119.69570 * 180.27011 * 25 24 23 37 37 H 1.08004 * 119.68562 * 179.56544 * 26 25 24 38 38 H 1.07998 * 120.09353 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2872 2.7438 0.1225 5 1 3.1908 1.6446 1.1466 6 1 3.0071 1.7508 -1.2691 7 6 2.0085 -1.2039 0.0057 8 1 3.0871 -1.2045 0.0629 9 7 1.3260 -2.3886 -0.0611 10 6 1.5568 -3.4002 -0.9742 11 6 2.5767 -3.3771 -2.0311 12 8 2.6291 -4.2792 -2.8458 13 7 3.4545 -2.3566 -2.0983 14 7 4.3647 -2.2843 -3.1610 15 6 5.3366 -1.2953 -3.1754 16 7 5.4796 -0.4736 -2.1404 17 6 6.4025 0.4670 -2.1502 18 7 7.2150 0.6340 -3.1739 19 6 7.1355 -0.1451 -4.2436 20 6 6.1862 -1.1501 -4.2763 21 9 6.0789 -1.9673 -5.3468 22 6 0.6882 -4.4212 -0.7378 23 6 -0.1243 -4.0511 0.3625 24 6 -1.1705 -4.6873 1.0419 25 6 -1.7657 -4.0691 2.1045 26 6 -1.3524 -2.8072 2.5103 27 6 -0.3278 -2.1589 1.8545 28 6 0.2991 -2.7718 0.7747 29 1 -0.4850 -0.8361 -0.0811 30 1 3.4562 -1.6722 -1.4109 31 1 4.3149 -2.9260 -3.8867 32 1 6.4950 1.1202 -1.2952 33 1 7.8067 0.0002 -5.0770 34 1 0.6295 -5.3478 -1.2895 35 1 -1.4979 -5.6693 0.7339 36 1 -2.5695 -4.5636 2.6296 37 1 -1.8381 -2.3290 3.3481 38 1 -0.0137 -1.1773 2.1773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817071122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = 57.864211 kcal Electronic energy + Delta-G solvation = -28879.666330 eV Core-core repulsion = 24638.262517 eV Total energy + Delta-G solvation = -4241.403812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 5.77 seconds Orbital eigenvalues (eV) -50.07347 -42.59135 -41.99926 -40.59751 -37.86345 -37.74779 -35.67133 -34.60697 -33.38370 -32.39339 -31.31175 -30.54410 -29.55884 -26.70557 -25.84385 -25.21389 -24.35382 -22.85132 -22.27014 -21.65938 -20.58839 -19.79705 -19.37525 -18.53799 -18.34623 -17.59847 -17.53993 -17.35106 -16.83851 -16.59365 -16.27583 -16.09336 -15.74004 -15.59804 -15.26999 -14.92273 -14.90685 -14.79047 -14.40931 -14.30492 -13.91855 -13.73565 -13.61863 -12.74741 -12.60705 -12.50377 -12.23419 -12.11129 -11.99582 -11.75832 -11.66767 -11.59366 -11.03493 -10.72555 -10.58456 -10.43056 -9.47991 -9.13547 -8.80026 -8.47281 -6.80452 -0.32918 -0.19057 0.00735 0.52295 0.91030 1.12294 1.46159 1.53289 1.73077 2.13130 2.27680 2.38558 2.57396 2.58977 2.66777 2.76198 3.12928 3.17801 3.33826 3.54242 3.73637 4.02505 4.22628 4.29358 4.35880 4.55985 4.58491 4.63426 4.78345 4.92281 5.01445 5.09881 5.22655 5.36747 5.40426 5.52026 5.65397 5.74081 5.78749 5.84810 5.96314 6.09484 6.31975 6.39816 6.76389 6.89700 7.05626 7.19420 8.19018 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.004010 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.527350 B = 6980.052013 C = 8645.310199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C -0.001 4.001 3 Si 1.116 2.884 4 H -0.279 1.279 5 H -0.247 1.247 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.105 0.895 9 N -0.295 5.295 10 C -0.037 4.037 11 C 0.592 3.408 12 O -0.571 6.571 13 N -0.507 5.507 14 N -0.503 5.503 15 C 0.403 3.597 16 N -0.583 5.583 17 C 0.337 3.663 18 N -0.541 5.541 19 C 0.177 3.823 20 C -0.073 4.073 21 F -0.125 7.125 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.078 4.078 25 C -0.151 4.151 26 C -0.113 4.113 27 C -0.118 4.118 28 C 0.059 3.941 29 H 0.277 0.723 30 H 0.443 0.557 31 H 0.444 0.556 32 H 0.235 0.765 33 H 0.221 0.779 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 1.020 -2.115 8.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.211 4.211 3 Si 0.932 3.068 4 H -0.204 1.204 5 H -0.171 1.171 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.122 0.878 9 N 0.038 4.962 10 C -0.151 4.151 11 C 0.381 3.619 12 O -0.451 6.451 13 N -0.262 5.262 14 N -0.231 5.231 15 C 0.157 3.843 16 N -0.308 5.308 17 C 0.049 3.951 18 N -0.258 5.258 19 C 0.013 3.987 20 C -0.104 4.104 21 F -0.104 7.104 22 C -0.181 4.181 23 C -0.155 4.155 24 C -0.097 4.097 25 C -0.169 4.169 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.055 4.055 29 H 0.089 0.911 30 H 0.299 0.701 31 H 0.290 0.710 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.479 2.914 -1.761 9.137 hybrid contribution -0.230 -2.433 -1.035 2.654 sum 8.249 0.481 -2.796 8.723 Atomic orbital electron populations 1.70730 1.07792 1.32682 1.37869 1.28262 0.96341 1.05726 0.90790 0.82966 0.74613 0.69595 0.79618 1.20376 1.17058 1.18501 1.20620 0.93290 0.83316 1.61184 0.87844 1.40253 1.24872 1.12314 1.18725 1.20230 1.03233 0.94944 0.96696 1.17327 0.79864 0.80653 0.84066 1.90718 1.74120 1.37662 1.42599 1.46050 1.29559 1.29045 1.21549 1.43249 1.27272 1.32939 1.19686 1.18847 0.86723 0.88246 0.90438 1.68040 1.26851 1.09433 1.26491 1.25465 0.83035 0.89922 0.96664 1.68617 1.27281 1.28195 1.01754 1.23767 0.92234 0.85528 0.97147 1.18677 1.05131 1.00125 0.86490 1.91510 1.95780 1.70807 1.52289 1.20747 0.97398 0.99512 1.00460 1.18414 1.01605 0.95266 1.00177 1.20604 0.94015 0.99950 0.95133 1.20870 1.02184 0.95567 0.98303 1.21129 0.96019 0.95864 1.00251 1.20262 0.98504 0.99500 0.95525 1.19061 0.95787 0.95236 0.95401 0.91076 0.70139 0.71022 0.74956 0.76280 0.82821 0.83900 0.82781 0.83840 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.91 12.39 21.67 0.27 -45.64 16 2 C 0.00 -0.07 5.17 84.95 0.44 0.37 16 3 Si 1.12 41.61 29.92 68.60 2.05 43.66 16 4 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 6 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.46 -22.44 7.77 84.09 0.65 -21.79 16 8 H 0.10 4.88 6.18 -2.91 -0.02 4.86 16 9 N -0.29 -14.77 2.64 -331.34 -0.87 -15.64 16 10 C -0.04 -1.77 6.77 39.91 0.27 -1.50 16 11 C 0.59 27.10 7.89 86.51 0.68 27.78 16 12 O -0.57 -26.70 16.71 -4.24 -0.07 -26.77 16 13 N -0.51 -21.08 6.17 -176.25 -1.09 -22.17 16 14 N -0.50 -17.65 6.40 -54.92 -0.35 -18.00 16 15 C 0.40 12.35 7.64 133.18 1.02 13.37 16 16 N -0.58 -17.74 9.54 -197.40 -1.88 -19.62 16 17 C 0.34 7.85 12.28 180.90 2.22 10.07 16 18 N -0.54 -11.49 10.43 -200.17 -2.09 -13.58 16 19 C 0.18 3.33 11.28 84.59 0.95 4.28 16 20 C -0.07 -1.77 7.39 22.66 0.17 -1.60 16 21 F -0.12 -2.96 16.77 44.97 0.75 -2.20 16 22 C -0.15 -6.85 10.55 22.63 0.24 -6.61 16 23 C -0.15 -6.58 6.16 -21.33 -0.13 -6.71 16 24 C -0.08 -2.76 10.06 22.32 0.22 -2.54 16 25 C -0.15 -4.77 9.97 22.03 0.22 -4.55 16 26 C -0.11 -4.01 10.02 22.32 0.22 -3.78 16 27 C -0.12 -5.25 8.27 22.38 0.19 -5.06 16 28 C 0.06 2.83 5.24 39.06 0.20 3.04 16 29 H 0.28 15.49 5.53 -92.71 -0.51 14.98 16 30 H 0.44 18.99 3.88 -213.32 -0.83 18.16 16 31 H 0.44 14.73 7.61 -213.32 -1.62 13.10 16 32 H 0.23 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.22 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.15 6.16 8.06 -2.91 -0.02 6.14 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.10 4.78 7.21 -2.91 -0.02 4.76 16 Total: -1.00 -64.78 337.48 3.27 -61.51 By element: Atomic # 1 Polarization: 54.72 SS G_CDS: -1.02 Total: 53.70 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.57 Total: 4.76 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -6.01 Total: -134.66 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.77 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.75 Total: -2.20 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.05 Total: 43.66 kcal Total: -64.78 3.27 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817071122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.378 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.77 seconds