Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48499 * 109.47195 * 269.99967 * 3 2 1 5 5 H 1.48504 * 109.47086 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.47298 * 149.99963 * 3 2 1 7 7 C 1.38648 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00062 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00205 * 185.07023 * 9 7 2 11 11 C 1.38958 * 120.03075 * 185.77225 * 10 9 7 12 12 C 1.38126 * 120.07633 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.14384 * 359.74282 * 12 11 10 14 14 C 1.38957 * 120.05997 * 0.51196 * 13 12 11 15 15 N 1.39681 * 120.03944 * 179.76484 * 14 13 12 16 16 S 1.65597 * 119.99913 * 254.09504 * 15 14 13 17 17 O 1.42102 * 104.27921 * 304.17114 * 16 15 14 18 18 O 1.42098 * 104.27544 * 176.31695 * 16 15 14 19 19 C 1.81400 * 104.45092 * 60.24409 * 16 15 14 20 20 C 1.53000 * 109.46956 * 175.11187 * 19 16 15 21 21 O 1.42899 * 109.47080 * 180.02562 * 20 19 16 22 22 C 1.42900 * 114.00154 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47159 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49656 * 243.62493 * 23 22 21 25 25 C 1.52994 * 117.49589 * 174.99969 * 23 22 21 26 26 C 1.38724 * 120.02705 * 5.74603 * 10 9 7 27 27 H 0.96998 * 119.99533 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96537 * 359.95374 * 11 10 9 29 29 H 1.08004 * 119.92865 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.96918 * 180.27321 * 13 12 11 31 31 H 0.96996 * 119.99892 * 74.09177 * 15 14 13 32 32 H 1.08996 * 109.47145 * 55.11467 * 19 16 15 33 33 H 1.09000 * 109.47171 * 295.10974 * 19 16 15 34 34 H 1.08994 * 109.47451 * 60.00362 * 20 19 16 35 35 H 1.09000 * 109.47007 * 299.99887 * 20 19 16 36 36 H 1.08995 * 109.47027 * 60.00378 * 22 21 20 37 37 H 1.08997 * 109.46966 * 299.99994 * 22 21 20 38 38 H 1.08993 * 115.54723 * 29.33045 * 23 22 21 39 39 H 1.09001 * 117.50177 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.49541 * 145.02126 * 24 23 22 41 41 H 1.09002 * 117.50152 * 214.97300 * 25 23 22 42 42 H 1.09001 * 117.50425 * 0.02562 * 25 23 22 43 43 H 1.07995 * 120.07593 * 0.04991 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1058 11 6 1.4538 -4.7449 -0.0080 12 6 2.2011 -5.9016 0.0995 13 6 3.5642 -5.8296 0.3153 14 6 4.1855 -4.5925 0.4353 15 7 5.5625 -4.5203 0.6583 16 16 6.1384 -4.1070 2.1549 17 8 5.5261 -2.8551 2.4326 18 8 7.5494 -4.2209 2.0311 19 6 5.4906 -5.3916 3.2597 20 6 6.0574 -5.1879 4.6662 21 8 5.5476 -6.2001 5.5365 22 6 6.0183 -6.1009 6.8821 23 6 5.4118 -7.2291 7.7190 24 6 4.4826 -6.8346 8.8687 25 6 5.8855 -7.3673 9.1672 26 6 3.4372 -3.4285 0.3277 27 1 -0.4849 0.8401 -0.0004 28 1 0.3893 -4.8046 -0.1804 29 1 1.7198 -6.8643 0.0103 30 1 4.1465 -6.7357 0.3945 31 1 6.1814 -4.7123 -0.0635 32 1 5.7851 -6.3729 2.8880 33 1 4.4030 -5.3271 3.2935 34 1 5.7629 -4.2065 5.0380 35 1 7.1450 -5.2523 4.6324 36 1 5.7230 -5.1387 7.3003 37 1 7.1050 -6.1841 6.8938 38 1 5.1800 -8.1450 7.1757 39 1 4.3037 -5.7714 9.0292 40 1 3.6390 -7.4912 9.0819 41 1 5.9648 -8.3743 9.5769 42 1 6.6289 -6.6544 9.5239 43 1 3.9182 -2.4657 0.4169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818048826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -88.731699 kcal Electronic energy + Delta-G solvation = -26990.145242 eV Core-core repulsion = 22936.703308 eV Total energy + Delta-G solvation = -4053.441934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -39.26240 -38.81967 -37.18405 -36.97433 -36.89938 -35.93815 -34.26374 -32.25396 -32.06014 -29.24555 -28.41397 -27.26244 -25.34278 -23.68575 -22.74003 -22.00034 -21.47706 -21.03356 -19.34067 -18.26758 -18.01246 -17.55083 -17.14053 -16.67050 -16.07878 -15.81669 -15.75397 -15.17291 -14.96814 -14.72344 -14.58522 -14.19234 -13.85846 -13.79547 -13.66407 -13.13628 -12.65594 -12.46913 -12.21772 -12.09950 -12.07561 -11.94741 -11.88009 -11.77714 -11.50192 -11.35098 -11.25036 -11.02385 -11.00246 -10.78797 -10.70473 -10.60319 -10.42159 -9.84901 -9.73594 -9.51208 -8.85727 -8.22358 -7.37888 -6.47085 -4.05394 0.13860 1.89669 2.19046 2.65258 3.11023 3.15267 3.17822 3.24079 3.48154 3.79469 3.98416 4.20195 4.29768 4.37287 4.49331 4.51082 4.63461 4.74854 4.87159 4.94588 5.07661 5.09723 5.14468 5.21052 5.26018 5.31455 5.48701 5.52607 5.54455 5.61741 5.73344 5.79256 5.82391 6.03538 6.18298 6.54276 6.61559 6.81975 6.95212 7.00470 7.10831 7.25538 7.38149 7.69786 7.97647 8.98927 9.63582 10.70191 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002826 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.900688 B = 9906.218787 C =10186.136209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.391 4.391 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.156 3.844 11 C -0.182 4.182 12 C -0.071 4.071 13 C -0.212 4.212 14 C 0.152 3.848 15 N -1.056 6.056 16 S 2.613 3.387 17 O -0.932 6.932 18 O -0.961 6.961 19 C -0.632 4.632 20 C 0.078 3.922 21 O -0.373 6.373 22 C 0.087 3.913 23 C -0.154 4.154 24 C -0.177 4.177 25 C -0.174 4.174 26 C -0.216 4.216 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.421 0.579 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 -13.798 11.123 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.113 0.887 9 O -0.072 6.072 10 C 0.100 3.900 11 C -0.202 4.202 12 C -0.090 4.090 13 C -0.234 4.234 14 C 0.058 3.942 15 N -0.812 5.812 16 S 2.705 3.295 17 O -0.922 6.922 18 O -0.952 6.952 19 C -0.760 4.760 20 C 0.000 4.000 21 O -0.293 6.293 22 C 0.010 3.990 23 C -0.172 4.172 24 C -0.214 4.214 25 C -0.211 4.211 26 C -0.238 4.238 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.259 0.741 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.565 -12.913 11.407 20.751 hybrid contribution 0.485 0.203 -0.162 0.550 sum 12.050 -12.710 11.245 20.813 Atomic orbital electron populations 1.70038 1.05980 1.27829 1.45634 1.25290 0.95846 0.98906 0.96284 0.85737 0.79317 0.79890 0.78806 1.19810 1.20172 1.18750 1.21397 0.92001 0.80634 1.52619 0.88742 1.84005 1.34063 1.11469 1.77693 1.19241 0.89760 0.88280 0.92683 1.20358 1.00277 0.89971 1.09617 1.20535 0.93102 0.97075 0.98333 1.20763 0.95082 0.95696 1.11865 1.16994 0.80979 0.93127 1.03100 1.52926 1.12271 1.88064 1.27978 1.05075 0.73836 0.76095 0.74535 1.93688 1.77615 1.37001 1.83905 1.93590 1.28908 1.87440 1.85231 1.30757 1.15004 1.21000 1.09215 1.21980 0.97721 0.92510 0.87795 1.87935 1.70826 1.51242 1.19249 1.22099 0.97615 0.97258 0.81997 1.22122 1.04468 1.00688 0.89971 1.23099 0.93792 1.02145 1.02335 1.22985 0.98105 1.02908 0.97123 1.21544 0.94557 0.98818 1.08899 0.91938 0.86068 0.86351 0.86955 0.74146 0.84127 0.83500 0.91647 0.91681 0.92687 0.92541 0.86729 0.88494 0.88463 0.88347 0.88618 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 8 H 0.10 2.52 5.29 -52.49 -0.28 2.24 16 9 O -0.17 -4.75 9.76 0.03 0.00 -4.75 16 10 C 0.16 3.63 6.64 -39.14 -0.26 3.37 16 11 C -0.18 -3.57 9.99 -39.36 -0.39 -3.97 16 12 C -0.07 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.21 -3.24 9.97 -39.33 -0.39 -3.63 16 14 C 0.15 2.60 5.64 -83.81 -0.47 2.13 16 15 N -1.06 -14.92 5.60 32.40 0.18 -14.74 16 16 S 2.61 37.24 5.43 -107.50 -0.58 36.65 16 17 O -0.93 -17.41 16.97 -57.54 -0.98 -18.38 16 18 O -0.96 -14.75 18.08 -57.54 -1.04 -15.79 16 19 C -0.63 -7.34 6.27 37.16 0.23 -7.10 16 20 C 0.08 0.88 5.95 37.16 0.22 1.10 16 21 O -0.37 -4.45 10.34 -35.23 -0.36 -4.82 16 22 C 0.09 0.81 6.22 37.16 0.23 1.04 16 23 C -0.15 -1.31 6.06 -90.62 -0.55 -1.86 16 24 C -0.18 -1.33 10.18 -26.73 -0.27 -1.61 16 25 C -0.17 -1.15 10.25 -26.73 -0.27 -1.42 16 26 C -0.22 -4.64 8.36 -39.20 -0.33 -4.97 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.42 4.85 8.92 -34.47 -0.31 4.55 16 32 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.15 1.79 8.14 -51.92 -0.42 1.37 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.14 3.28 5.38 -52.49 -0.28 2.99 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -34.62 382.47 -9.64 -44.27 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.90 Total: 8.25 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -2.46 Total: -28.08 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.94 Total: -39.07 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -2.38 Total: -43.74 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.58 Total: 36.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.62 -9.64 -44.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818048826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.466 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds