Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48499 * 109.47195 * 269.99967 * 3 2 1 5 5 H 1.48504 * 109.47086 * 30.00097 * 3 2 1 6 6 H 1.48501 * 109.47298 * 149.99963 * 3 2 1 7 7 C 1.38648 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00062 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00205 * 185.07023 * 9 7 2 11 11 C 1.38958 * 120.03075 * 185.77225 * 10 9 7 12 12 C 1.38126 * 120.07633 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.14384 * 359.74282 * 12 11 10 14 14 C 1.38957 * 120.05997 * 0.51196 * 13 12 11 15 15 N 1.39681 * 120.03944 * 179.76484 * 14 13 12 16 16 S 1.65597 * 119.99913 * 254.09504 * 15 14 13 17 17 O 1.42102 * 104.27921 * 304.17114 * 16 15 14 18 18 O 1.42098 * 104.27544 * 176.31695 * 16 15 14 19 19 C 1.81400 * 104.45092 * 60.24409 * 16 15 14 20 20 C 1.53000 * 109.46956 * 175.11187 * 19 16 15 21 21 O 1.42899 * 109.47080 * 180.02562 * 20 19 16 22 22 C 1.42900 * 114.00154 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47159 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49656 * 243.62493 * 23 22 21 25 25 C 1.52994 * 117.49589 * 174.99969 * 23 22 21 26 26 C 1.38724 * 120.02705 * 5.74603 * 10 9 7 27 27 H 0.96998 * 119.99533 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.96537 * 359.95374 * 11 10 9 29 29 H 1.08004 * 119.92865 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.96918 * 180.27321 * 13 12 11 31 31 H 0.96996 * 119.99892 * 74.09177 * 15 14 13 32 32 H 1.08996 * 109.47145 * 55.11467 * 19 16 15 33 33 H 1.09000 * 109.47171 * 295.10974 * 19 16 15 34 34 H 1.08994 * 109.47451 * 60.00362 * 20 19 16 35 35 H 1.09000 * 109.47007 * 299.99887 * 20 19 16 36 36 H 1.08995 * 109.47027 * 60.00378 * 22 21 20 37 37 H 1.08997 * 109.46966 * 299.99994 * 22 21 20 38 38 H 1.08993 * 115.54723 * 29.33045 * 23 22 21 39 39 H 1.09001 * 117.50177 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.49541 * 145.02126 * 24 23 22 41 41 H 1.09002 * 117.50152 * 214.97300 * 25 23 22 42 42 H 1.09001 * 117.50425 * 0.02562 * 25 23 22 43 43 H 1.07995 * 120.07593 * 0.04991 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1058 11 6 1.4538 -4.7449 -0.0080 12 6 2.2011 -5.9016 0.0995 13 6 3.5642 -5.8296 0.3153 14 6 4.1855 -4.5925 0.4353 15 7 5.5625 -4.5203 0.6583 16 16 6.1384 -4.1070 2.1549 17 8 5.5261 -2.8551 2.4326 18 8 7.5494 -4.2209 2.0311 19 6 5.4906 -5.3916 3.2597 20 6 6.0574 -5.1879 4.6662 21 8 5.5476 -6.2001 5.5365 22 6 6.0183 -6.1009 6.8821 23 6 5.4118 -7.2291 7.7190 24 6 4.4826 -6.8346 8.8687 25 6 5.8855 -7.3673 9.1672 26 6 3.4372 -3.4285 0.3277 27 1 -0.4849 0.8401 -0.0004 28 1 0.3893 -4.8046 -0.1804 29 1 1.7198 -6.8643 0.0103 30 1 4.1465 -6.7357 0.3945 31 1 6.1814 -4.7123 -0.0635 32 1 5.7851 -6.3729 2.8880 33 1 4.4030 -5.3271 3.2935 34 1 5.7629 -4.2065 5.0380 35 1 7.1450 -5.2523 4.6324 36 1 5.7230 -5.1387 7.3003 37 1 7.1050 -6.1841 6.8938 38 1 5.1800 -8.1450 7.1757 39 1 4.3037 -5.7714 9.0292 40 1 3.6390 -7.4912 9.0819 41 1 5.9648 -8.3743 9.5769 42 1 6.6289 -6.6544 9.5239 43 1 3.9182 -2.4657 0.4169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818048826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -114.292713 kcal Electronic energy + Delta-G solvation = -26991.253650 eV Core-core repulsion = 22936.703308 eV Total energy + Delta-G solvation = -4054.550343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -40.88973 -39.56064 -38.73094 -38.26692 -37.63569 -37.21574 -35.67118 -34.21729 -32.96855 -30.81862 -29.91897 -27.97441 -27.30431 -24.60011 -23.52833 -23.26812 -23.02723 -21.67553 -20.55064 -19.98985 -19.24700 -19.06312 -18.15212 -17.65850 -17.24426 -17.01085 -16.74912 -16.53342 -16.35216 -16.17477 -15.83124 -15.52001 -15.41038 -14.72541 -14.61217 -14.49551 -14.39254 -13.81404 -13.63539 -13.39299 -13.23958 -13.01423 -12.96788 -12.90042 -12.75102 -12.57892 -12.41577 -12.38681 -12.27995 -12.16040 -11.96459 -11.41931 -11.35999 -11.27697 -11.02071 -10.79322 -10.56890 -9.69611 -9.05305 -8.48999 -6.16025 -1.02434 0.40029 0.67850 1.32454 1.40585 1.49140 1.49738 2.16536 2.27651 2.69873 2.75950 2.94567 3.10053 3.13107 3.42703 3.49285 3.68686 3.88278 3.93417 4.06094 4.09549 4.14200 4.20228 4.29634 4.37653 4.39952 4.43690 4.50997 4.63716 4.67038 4.67214 4.76503 4.99903 5.06770 5.10073 5.19777 5.22564 5.22922 5.53423 5.63159 5.66930 5.92747 6.01828 6.03292 6.25802 6.96746 7.74589 8.73578 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002826 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.900688 B = 9906.218787 C =10186.136209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.007 2.993 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.410 4.410 8 H 0.092 0.908 9 O -0.225 6.225 10 C 0.116 3.884 11 C -0.189 4.189 12 C -0.057 4.057 13 C -0.175 4.175 14 C 0.159 3.841 15 N -1.050 6.050 16 S 2.621 3.379 17 O -0.987 6.987 18 O -0.972 6.972 19 C -0.612 4.612 20 C 0.065 3.935 21 O -0.389 6.389 22 C 0.079 3.921 23 C -0.170 4.170 24 C -0.186 4.186 25 C -0.159 4.159 26 C -0.237 4.237 27 H 0.274 0.726 28 H 0.123 0.877 29 H 0.169 0.831 30 H 0.167 0.833 31 H 0.434 0.566 32 H 0.174 0.826 33 H 0.144 0.856 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.831 -17.286 11.903 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.826 3.174 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.110 0.890 9 O -0.132 6.132 10 C 0.065 3.935 11 C -0.209 4.209 12 C -0.075 4.075 13 C -0.197 4.197 14 C 0.064 3.936 15 N -0.808 5.808 16 S 2.717 3.283 17 O -0.976 6.976 18 O -0.962 6.962 19 C -0.743 4.743 20 C -0.013 4.013 21 O -0.309 6.309 22 C 0.003 3.997 23 C -0.188 4.188 24 C -0.223 4.223 25 C -0.196 4.196 26 C -0.259 4.259 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.275 0.725 32 H 0.192 0.808 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.791 -16.433 12.152 24.656 hybrid contribution -0.015 0.830 -0.318 0.889 sum 13.776 -15.603 11.835 23.944 Atomic orbital electron populations 1.70153 1.07625 1.28766 1.48737 1.26418 0.96831 1.02333 0.95944 0.84758 0.77764 0.75337 0.79497 1.18288 1.18960 1.18755 1.21680 0.92142 0.81674 1.53111 0.89013 1.83951 1.35414 1.12421 1.81369 1.19856 0.90794 0.88460 0.94403 1.20709 1.01012 0.89879 1.09260 1.21119 0.93267 0.97571 0.95547 1.21401 0.95141 0.96437 1.06694 1.17021 0.82014 0.92519 1.01999 1.52755 1.11146 1.88042 1.28836 1.04581 0.73250 0.75837 0.74614 1.93640 1.78357 1.41010 1.84634 1.93572 1.29424 1.87698 1.85491 1.30507 1.14512 1.20627 1.08662 1.22144 0.99006 0.92623 0.87512 1.87891 1.71404 1.51243 1.20324 1.22307 0.98646 0.97788 0.80968 1.22140 1.05707 1.00297 0.90655 1.23177 0.94616 1.02276 1.02193 1.23082 0.97427 1.03741 0.95309 1.21526 0.94410 0.99500 1.10504 0.91735 0.85904 0.81311 0.81585 0.72490 0.80770 0.83739 0.91790 0.89667 0.92465 0.91024 0.87290 0.88665 0.88103 0.87146 0.87671 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.70 13.67 21.61 0.30 -56.41 16 2 C -0.02 -1.01 5.49 84.83 0.47 -0.54 16 3 Si 1.01 45.20 29.55 68.60 2.03 47.23 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.41 -24.74 9.44 67.92 0.64 -24.10 16 8 H 0.09 5.33 5.29 -2.91 -0.02 5.31 16 9 O -0.23 -13.55 9.76 -22.79 -0.22 -13.77 16 10 C 0.12 5.64 6.64 22.56 0.15 5.79 16 11 C -0.19 -7.26 9.99 22.42 0.22 -7.04 16 12 C -0.06 -1.54 10.03 22.23 0.22 -1.32 16 13 C -0.18 -4.43 9.97 22.43 0.22 -4.20 16 14 C 0.16 5.10 5.64 38.20 0.22 5.31 16 15 N -1.05 -27.23 5.60 -51.41 -0.29 -27.52 16 16 S 2.62 70.88 5.43 -56.49 -0.31 70.57 16 17 O -0.99 -37.74 16.97 -127.65 -2.17 -39.90 16 18 O -0.97 -27.96 18.08 -127.65 -2.31 -30.27 16 19 C -0.61 -12.23 6.27 71.98 0.45 -11.78 16 20 C 0.07 1.32 5.95 71.98 0.43 1.74 16 21 O -0.39 -8.33 10.34 -148.98 -1.54 -9.87 16 22 C 0.08 1.32 6.22 71.98 0.45 1.77 16 23 C -0.17 -2.57 6.06 -10.79 -0.07 -2.64 16 24 C -0.19 -2.53 10.18 30.60 0.31 -2.22 16 25 C -0.16 -1.72 10.25 30.59 0.31 -1.41 16 26 C -0.24 -10.49 8.36 22.52 0.19 -10.30 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 29 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.43 8.79 8.92 -96.75 -0.86 7.93 16 32 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 0.91 7.88 -2.39 -0.02 0.89 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.30 8.03 -2.39 -0.02 1.29 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.11 5.58 5.38 -2.91 -0.02 5.56 16 Total: -1.00 -82.67 382.47 -0.12 -82.79 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.17 Total: 28.08 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 4.22 Total: -50.93 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: 0.01 Total: -83.93 kcal Atomic # 8 Polarization: -87.58 SS G_CDS: -6.24 Total: -93.82 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 70.88 SS G_CDS: -0.31 Total: 70.57 kcal Total: -82.67 -0.12 -82.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818048826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.507 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds