Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48502 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46842 * 299.99457 * 3 2 1 6 6 H 1.48506 * 109.47242 * 59.99842 * 3 2 1 7 7 C 1.37876 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47449 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99948 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00342 * 180.02562 * 11 10 9 14 14 S 1.65593 * 120.00150 * 180.02562 * 13 11 10 15 15 O 1.42100 * 104.27954 * 308.92635 * 14 13 11 16 16 O 1.42110 * 104.27550 * 181.07190 * 14 13 11 17 17 C 1.81400 * 104.45297 * 65.00087 * 14 13 11 18 18 C 1.52995 * 109.47237 * 179.97438 * 17 14 13 19 19 O 1.42903 * 109.46972 * 179.97438 * 18 17 14 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47249 * 59.99857 * 9 7 2 29 29 H 1.08994 * 109.47383 * 299.99517 * 9 7 2 30 30 H 1.09007 * 109.46915 * 59.99794 * 10 9 7 31 31 H 1.09001 * 109.47325 * 300.00461 * 10 9 7 32 32 H 0.97003 * 119.99272 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46607 * 59.99749 * 17 14 13 34 34 H 1.09005 * 109.46800 * 300.00105 * 17 14 13 35 35 H 1.09005 * 109.47112 * 59.99967 * 18 17 14 36 36 H 1.08993 * 109.47202 * 300.00070 * 18 17 14 37 37 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 38 38 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 39 39 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 40 40 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 43 43 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1344 0.0018 14 16 1.3379 -7.5684 0.0019 15 8 0.4129 -7.4391 1.0727 16 8 2.3552 -8.5604 0.0284 17 6 0.4694 -7.5898 -1.5905 18 6 -0.3411 -8.8818 -1.7121 19 8 -1.0258 -8.8983 -2.9663 20 6 -1.8170 -10.0686 -3.1811 21 6 -2.4906 -9.9797 -4.5263 22 6 -1.8600 -10.4812 -5.6496 23 6 -2.4780 -10.4001 -6.8834 24 6 -3.7270 -9.8180 -6.9939 25 6 -4.3553 -9.3117 -5.8715 26 6 -3.7393 -9.3970 -4.6369 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8906 31 1 2.8721 -3.6043 -0.8894 32 1 3.1359 -6.1343 0.0015 33 1 1.1961 -7.5395 -2.4014 34 1 -0.2014 -6.7327 -1.6500 35 1 -1.0677 -8.9326 -0.9012 36 1 0.3300 -9.7386 -1.6528 37 1 -2.5741 -10.1439 -2.4005 38 1 -1.1768 -10.9504 -3.1526 39 1 -0.8843 -10.9364 -5.5632 40 1 -1.9852 -10.7915 -7.7610 41 1 -4.2100 -9.7551 -7.9578 42 1 -5.3292 -8.8530 -5.9585 43 1 -4.2323 -9.0059 -3.7593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835505830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -139.297587 kcal Electronic energy + Delta-G solvation = -26163.436675 eV Core-core repulsion = 22107.802040 eV Total energy + Delta-G solvation = -4055.634635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.77205 -39.72175 -38.10876 -37.27143 -36.18564 -34.29602 -33.62828 -33.06648 -31.27678 -31.22330 -31.07668 -26.37578 -26.08010 -23.80701 -22.91171 -22.60765 -21.67575 -20.40125 -19.61756 -18.21285 -17.56960 -17.31346 -16.91567 -16.74227 -16.29562 -16.06693 -15.69840 -15.48585 -15.17259 -14.97128 -14.56291 -14.47661 -13.92390 -13.80163 -13.56891 -13.14626 -12.96387 -12.84281 -12.72241 -12.32031 -12.22554 -12.17045 -12.02333 -11.95660 -11.46135 -11.35308 -11.31855 -11.14813 -11.00974 -10.65437 -10.61574 -10.10649 -10.06499 -10.00736 -9.52386 -9.23559 -9.18224 -9.17274 -8.40257 -6.03606 -4.08724 -0.12713 0.92715 1.08754 2.26412 2.49182 3.09988 3.28847 3.36408 3.39114 3.48169 3.79296 4.01212 4.20347 4.39909 4.44358 4.49308 4.56492 4.68695 4.77646 4.79132 4.81645 4.88912 4.98393 5.15354 5.19201 5.21285 5.31951 5.31993 5.49650 5.62985 5.71208 5.98551 6.00885 6.11392 6.18531 6.25071 6.54899 6.64439 6.71958 6.86880 7.63465 7.71268 7.82681 7.95773 8.30816 8.98755 9.55685 11.07266 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002248 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.800825 B =12449.829315 C =14461.017117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.131 4.131 11 C 0.528 3.472 12 O -0.488 6.488 13 N -1.057 6.057 14 S 2.601 3.399 15 O -0.925 6.925 16 O -0.951 6.951 17 C -0.629 4.629 18 C 0.078 3.922 19 O -0.368 6.368 20 C 0.097 3.903 21 C -0.092 4.092 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.097 4.097 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.433 0.567 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 -23.794 -10.403 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.173 4.173 11 C 0.317 3.683 12 O -0.358 6.358 13 N -0.824 5.824 14 S 2.694 3.306 15 O -0.915 6.915 16 O -0.941 6.941 17 C -0.758 4.758 18 C 0.000 4.000 19 O -0.288 6.288 20 C 0.021 3.979 21 C -0.092 4.092 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.115 4.115 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.270 0.730 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.658 -24.135 -9.841 26.199 hybrid contribution 0.830 1.104 -0.540 1.483 sum -1.827 -23.031 -10.381 25.328 Atomic orbital electron populations 1.69993 1.06076 1.26680 1.49899 1.25029 0.94847 0.99347 0.95151 0.86509 0.79970 0.83678 0.77630 1.19717 1.20995 1.20977 1.21197 0.93027 0.90752 1.51781 0.92348 1.19011 0.93218 0.89401 0.99049 1.22068 1.01052 0.90512 1.03698 1.21783 0.88612 0.86107 0.71839 1.90842 1.13537 1.86859 1.44577 1.55191 1.21717 1.23483 1.81976 1.05424 0.75075 0.73159 0.76931 1.93671 1.64741 1.84424 1.48674 1.93633 1.56472 1.56915 1.87119 1.30696 1.13834 1.07509 1.23740 1.21980 0.95363 0.94439 0.88209 1.88047 1.63712 1.41193 1.35821 1.21410 0.93956 0.88251 0.94300 1.19575 0.94982 1.00356 0.94333 1.21080 0.99372 0.99096 0.92137 1.21158 0.95603 1.00065 0.97446 1.21230 0.95390 0.97915 0.98682 1.21189 1.00322 0.99961 0.92612 1.21134 0.94789 0.97442 0.98114 0.92873 0.95504 0.95365 0.88910 0.88923 0.73034 0.83989 0.82691 0.91319 0.91640 0.91841 0.91973 0.85885 0.85858 0.85945 0.85740 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.78 4.26 -27.89 -0.12 0.66 16 10 C -0.13 -2.37 5.64 -27.89 -0.16 -2.53 16 11 C 0.53 8.95 7.57 -10.99 -0.08 8.86 16 12 O -0.49 -10.12 14.09 -11.59 -0.16 -10.28 16 13 N -1.06 -13.03 5.60 31.22 0.17 -12.86 16 14 S 2.60 33.10 5.11 -107.50 -0.55 32.55 16 15 O -0.93 -15.72 17.04 -64.79 -1.10 -16.83 16 16 O -0.95 -12.63 18.08 -57.54 -1.04 -13.67 16 17 C -0.63 -7.02 6.25 37.16 0.23 -6.79 16 18 C 0.08 0.82 5.95 37.16 0.22 1.04 16 19 O -0.37 -4.32 10.33 -35.23 -0.36 -4.68 16 20 C 0.10 0.88 6.06 36.01 0.22 1.10 16 21 C -0.09 -0.89 5.51 -104.62 -0.58 -1.47 16 22 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 23 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.43 3.66 8.79 -34.47 -0.30 3.36 16 33 H 0.14 1.26 8.14 -51.92 -0.42 0.83 16 34 H 0.15 1.99 7.19 -51.92 -0.37 1.62 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -37.55 385.14 -10.29 -47.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.13 Total: 0.78 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.64 Total: -18.86 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.91 Total: -38.72 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -2.67 Total: -45.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 33.10 SS G_CDS: -0.55 Total: 32.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.55 -10.29 -47.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835505830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.457 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds