Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48502 * 109.46795 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46842 * 299.99457 * 3 2 1 6 6 H 1.48506 * 109.47242 * 59.99842 * 3 2 1 7 7 C 1.37876 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47449 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99948 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00342 * 180.02562 * 11 10 9 14 14 S 1.65593 * 120.00150 * 180.02562 * 13 11 10 15 15 O 1.42100 * 104.27954 * 308.92635 * 14 13 11 16 16 O 1.42110 * 104.27550 * 181.07190 * 14 13 11 17 17 C 1.81400 * 104.45297 * 65.00087 * 14 13 11 18 18 C 1.52995 * 109.47237 * 179.97438 * 17 14 13 19 19 O 1.42903 * 109.46972 * 179.97438 * 18 17 14 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47249 * 59.99857 * 9 7 2 29 29 H 1.08994 * 109.47383 * 299.99517 * 9 7 2 30 30 H 1.09007 * 109.46915 * 59.99794 * 10 9 7 31 31 H 1.09001 * 109.47325 * 300.00461 * 10 9 7 32 32 H 0.97003 * 119.99272 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46607 * 59.99749 * 17 14 13 34 34 H 1.09005 * 109.46800 * 300.00105 * 17 14 13 35 35 H 1.09005 * 109.47112 * 59.99967 * 18 17 14 36 36 H 1.08993 * 109.47202 * 300.00070 * 18 17 14 37 37 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 38 38 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 39 39 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 40 40 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 43 43 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1344 0.0018 14 16 1.3379 -7.5684 0.0019 15 8 0.4129 -7.4391 1.0727 16 8 2.3552 -8.5604 0.0284 17 6 0.4694 -7.5898 -1.5905 18 6 -0.3411 -8.8818 -1.7121 19 8 -1.0258 -8.8983 -2.9663 20 6 -1.8170 -10.0686 -3.1811 21 6 -2.4906 -9.9797 -4.5263 22 6 -1.8600 -10.4812 -5.6496 23 6 -2.4780 -10.4001 -6.8834 24 6 -3.7270 -9.8180 -6.9939 25 6 -4.3553 -9.3117 -5.8715 26 6 -3.7393 -9.3970 -4.6369 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8906 31 1 2.8721 -3.6043 -0.8894 32 1 3.1359 -6.1343 0.0015 33 1 1.1961 -7.5395 -2.4014 34 1 -0.2014 -6.7327 -1.6500 35 1 -1.0677 -8.9326 -0.9012 36 1 0.3300 -9.7386 -1.6528 37 1 -2.5741 -10.1439 -2.4005 38 1 -1.1768 -10.9504 -3.1526 39 1 -0.8843 -10.9364 -5.5632 40 1 -1.9852 -10.7915 -7.7610 41 1 -4.2100 -9.7551 -7.9578 42 1 -5.3292 -8.8530 -5.9585 43 1 -4.2323 -9.0059 -3.7593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835505830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -166.534310 kcal Electronic energy + Delta-G solvation = -26164.617748 eV Core-core repulsion = 22107.802040 eV Total energy + Delta-G solvation = -4056.815708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16879 -40.36095 -38.85787 -38.40451 -37.34743 -35.60862 -35.56825 -33.80547 -32.96847 -32.02364 -31.83197 -27.97072 -27.03538 -24.76499 -24.25266 -23.52564 -22.30809 -21.92942 -20.74411 -19.29385 -19.03198 -18.22066 -17.95027 -17.67449 -17.46937 -17.27653 -16.54462 -16.50701 -16.44959 -16.32145 -15.82863 -15.48819 -15.18672 -14.53880 -14.39471 -14.33826 -14.24398 -13.86058 -13.78898 -13.61896 -13.48170 -13.34086 -13.26224 -12.86024 -12.78576 -12.72725 -12.44732 -12.40045 -11.99055 -11.94944 -11.91911 -11.73172 -11.69997 -11.32999 -11.07049 -10.80318 -10.55197 -9.86504 -9.81559 -8.16614 -6.29511 -1.17613 0.28584 0.45793 1.04964 1.26351 1.45005 1.45446 1.58429 2.25632 2.43932 2.63549 2.97002 3.05298 3.17671 3.37220 3.48269 3.65960 3.86798 3.88891 4.00908 4.05166 4.11232 4.25461 4.26885 4.35447 4.37049 4.46057 4.55038 4.58776 4.63492 4.72554 5.03299 5.05363 5.11419 5.50561 5.53307 5.57391 5.61116 5.64403 5.71426 5.87095 5.96485 6.06325 6.17410 6.52853 6.90783 7.40775 8.96011 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.002248 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.800825 B =12449.829315 C =14461.017117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.031 3.969 10 C -0.124 4.124 11 C 0.537 3.463 12 O -0.533 6.533 13 N -1.037 6.037 14 S 2.620 3.380 15 O -0.970 6.970 16 O -0.951 6.951 17 C -0.619 4.619 18 C 0.066 3.934 19 O -0.391 6.391 20 C 0.091 3.909 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.118 4.118 27 H 0.262 0.738 28 H -0.007 1.007 29 H -0.014 1.014 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.453 0.547 33 H 0.169 0.831 34 H 0.137 0.863 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -24.609 -11.607 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.098 0.902 9 C -0.007 4.007 10 C -0.166 4.166 11 C 0.326 3.674 12 O -0.407 6.407 13 N -0.805 5.805 14 S 2.715 3.285 15 O -0.960 6.960 16 O -0.941 6.941 17 C -0.750 4.750 18 C -0.012 4.012 19 O -0.311 6.311 20 C 0.015 3.985 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.005 0.995 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.293 0.707 33 H 0.187 0.813 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.062 -24.980 -11.024 27.305 hybrid contribution 0.023 1.266 -0.230 1.287 sum -0.039 -23.714 -11.254 26.249 Atomic orbital electron populations 1.70165 1.08228 1.27683 1.51674 1.26093 0.95675 1.03842 0.94869 0.85321 0.79446 0.78420 0.77334 1.17488 1.20838 1.21042 1.21740 0.94181 0.91414 1.50353 0.90215 1.18829 0.93956 0.92374 0.95505 1.21884 0.99645 0.88374 1.06656 1.21483 0.87820 0.86957 0.71102 1.90844 1.15508 1.87605 1.46714 1.54779 1.22877 1.21965 1.80895 1.04763 0.74352 0.72532 0.76824 1.93623 1.65880 1.84940 1.51595 1.93630 1.56484 1.56559 1.87431 1.30552 1.14074 1.07496 1.22844 1.22191 0.96048 0.94820 0.88127 1.87999 1.64255 1.42681 1.36135 1.21602 0.94346 0.88137 0.94374 1.19787 0.95309 1.01038 0.95032 1.21347 1.00066 0.99148 0.92234 1.21500 0.95708 0.99636 0.97998 1.21569 0.95532 0.97301 0.99436 1.21463 1.01077 1.00091 0.92580 1.21333 0.95306 0.98174 0.98759 0.92943 0.98868 0.99505 0.86355 0.85422 0.70654 0.81273 0.84495 0.91115 0.88840 0.91168 0.89861 0.84503 0.83666 0.83784 0.84354 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.74 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.61 4.26 29.85 0.13 1.74 16 10 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 11 C 0.54 17.91 7.57 87.65 0.66 18.57 16 12 O -0.53 -22.82 14.09 13.34 0.19 -22.63 16 13 N -1.04 -23.75 5.60 -173.53 -0.97 -24.72 16 14 S 2.62 63.64 5.11 -56.49 -0.29 63.35 16 15 O -0.97 -33.21 17.04 -120.72 -2.06 -35.27 16 16 O -0.95 -23.08 18.08 -127.65 -2.31 -25.39 16 17 C -0.62 -13.17 6.25 71.98 0.45 -12.72 16 18 C 0.07 1.31 5.95 71.98 0.43 1.73 16 19 O -0.39 -8.88 10.33 -148.98 -1.54 -10.42 16 20 C 0.09 1.59 6.06 71.24 0.43 2.02 16 21 C -0.11 -2.12 5.51 -19.86 -0.11 -2.23 16 22 C -0.11 -1.81 9.70 22.27 0.22 -1.59 16 23 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 26 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 27 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 28 H -0.01 -0.41 8.10 -2.38 -0.02 -0.43 16 29 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 30 H 0.12 3.53 8.14 -2.38 -0.02 3.51 16 31 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.45 6.28 8.79 -96.74 -0.85 5.43 16 33 H 0.17 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.14 3.58 7.19 -2.39 -0.02 3.56 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.07 8.08 -2.38 -0.02 1.06 16 38 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -83.99 385.14 -0.54 -84.53 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.17 Total: 15.56 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.96 Total: -32.51 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -0.69 Total: -82.31 kcal Atomic # 8 Polarization: -87.99 SS G_CDS: -5.72 Total: -93.70 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 63.64 SS G_CDS: -0.29 Total: 63.35 kcal Total: -83.99 -0.54 -84.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835505830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.005 kcal (2) G-P(sol) polarization free energy of solvation -83.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds