Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99972 * 2 1 4 4 O 1.20822 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47093 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47294 * 180.02562 * 6 5 3 8 8 C 1.36940 * 119.99872 * 274.99888 * 7 6 5 9 9 H 1.08000 * 119.99935 * 141.30127 * 8 7 6 10 10 C 1.38815 * 120.00177 * 321.30275 * 8 7 6 11 11 N 1.31616 * 119.99731 * 338.96206 * 10 8 7 12 12 Si 1.86795 * 120.00090 * 158.96168 * 10 8 7 13 13 H 1.48497 * 109.46961 * 90.00033 * 12 10 8 14 14 H 1.48501 * 109.47194 * 209.99890 * 12 10 8 15 15 H 1.48502 * 109.47124 * 330.00134 * 12 10 8 16 16 S 1.65596 * 120.00082 * 94.99716 * 7 6 5 17 17 O 1.42103 * 104.27714 * 149.70619 * 16 7 6 18 18 O 1.42100 * 104.27658 * 21.85291 * 16 7 6 19 19 C 1.81402 * 104.44977 * 265.77862 * 16 7 6 20 20 C 1.50703 * 109.46983 * 180.02562 * 19 16 7 21 21 C 1.38260 * 119.99479 * 270.21301 * 20 19 16 22 22 C 1.38218 * 119.99615 * 180.25431 * 21 20 19 23 23 C 1.38253 * 119.99782 * 359.51113 * 22 21 20 24 24 C 1.38212 * 120.00433 * 0.27482 * 23 22 21 25 25 C 1.50700 * 120.00200 * 179.97438 * 24 23 22 26 26 C 1.38207 * 120.00535 * 89.99999 * 20 19 16 27 27 H 1.08998 * 109.47192 * 60.00337 * 1 2 3 28 28 H 1.09006 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47376 * 300.00280 * 1 2 3 30 30 H 1.09004 * 109.47324 * 59.99529 * 5 3 2 31 31 H 1.08998 * 109.46901 * 300.00117 * 5 3 2 32 32 H 1.08999 * 109.47655 * 59.99985 * 6 5 3 33 33 H 1.08998 * 109.47384 * 299.99872 * 6 5 3 34 34 H 0.97004 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.46941 * 60.00283 * 19 16 7 36 36 H 1.08997 * 109.46934 * 299.99509 * 19 16 7 37 37 H 1.08000 * 120.00546 * 0.04140 * 21 20 19 38 38 H 1.08004 * 120.00029 * 179.78099 * 22 21 20 39 39 H 1.08003 * 120.00018 * 180.25389 * 23 22 21 40 40 H 1.08994 * 109.47265 * 90.00146 * 25 24 23 41 41 H 1.08994 * 109.47090 * 210.00344 * 25 24 23 42 42 H 1.09002 * 109.46910 * 330.00269 * 25 24 23 43 43 H 1.08001 * 119.99684 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1522 2.7521 1.1812 9 1 7.0841 2.2086 1.2328 10 6 5.6531 3.3828 2.3126 11 7 4.7813 4.3612 2.1898 12 14 6.2185 2.8431 4.0091 13 1 7.4163 3.6269 4.4042 14 1 5.1290 3.0751 4.9911 15 1 6.5599 1.3981 3.9806 16 16 6.2834 2.9861 -1.4290 17 8 7.4518 3.7152 -1.0789 18 8 5.3219 3.5288 -2.3236 19 6 6.7111 1.2893 -1.9068 20 6 7.4706 1.3102 -3.2083 21 6 6.7880 1.2342 -4.4082 22 6 7.4849 1.2481 -5.6018 23 6 8.8638 1.3482 -5.5959 24 6 9.5459 1.4287 -4.3965 25 6 11.0489 1.5372 -4.3902 26 6 8.8491 1.4098 -3.2026 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9564 0.7805 -0.8891 31 1 3.9556 0.7810 0.8908 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2356 -0.8906 34 1 4.4322 4.8018 2.9803 35 1 5.7990 0.7049 -2.0274 36 1 7.3314 0.8390 -1.1318 37 1 5.7105 1.1605 -4.4129 38 1 6.9520 1.1852 -6.5390 39 1 9.4081 1.3632 -6.5287 40 1 11.3375 2.5879 -4.4154 41 1 11.4429 1.0738 -3.4857 42 1 11.4536 1.0282 -5.2651 43 1 9.3820 1.4731 -2.2653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867739375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -130.785010 kcal Electronic energy + Delta-G solvation = -28093.949228 eV Core-core repulsion = 24038.683726 eV Total energy + Delta-G solvation = -4055.265502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.07897 -39.37611 -36.52691 -35.98125 -35.64550 -34.75944 -33.56984 -32.00207 -31.91124 -30.22408 -27.51988 -27.47410 -26.69626 -24.94379 -22.82449 -22.10331 -20.83390 -20.17895 -18.48278 -17.52651 -17.14806 -16.53228 -16.32736 -16.24638 -15.98779 -15.55745 -15.54976 -14.86028 -14.59545 -14.44195 -13.77412 -13.72724 -13.47221 -13.28451 -13.00452 -12.91365 -12.56626 -12.48037 -12.32343 -12.09261 -12.02338 -11.87040 -11.33429 -11.26731 -11.16488 -11.07711 -10.95051 -10.92216 -10.89168 -10.65310 -10.58881 -10.36061 -10.35353 -10.04767 -9.91274 -9.12022 -8.71179 -8.47630 -7.77705 -6.31024 -4.05517 0.97682 1.41839 1.59791 2.60653 2.99931 3.18476 3.25473 3.26906 3.77702 3.89570 4.29180 4.61728 4.70521 4.82758 4.87685 5.04973 5.06713 5.17252 5.19194 5.22348 5.27052 5.30562 5.51209 5.53898 5.57582 5.59174 5.63765 5.73664 5.78232 5.85105 5.86149 6.10704 6.15728 6.17143 6.47839 6.51745 6.57833 6.62240 6.70573 7.03097 7.13727 7.34191 7.67506 8.12537 8.33187 8.94930 9.31985 10.71408 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.004320 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.216256 B = 6480.194275 C = 8446.977043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.502 6.502 5 C -0.132 4.132 6 C 0.131 3.869 7 N -0.842 5.842 8 C -0.295 4.295 9 H 0.091 0.909 10 C 0.043 3.957 11 N -0.847 5.847 12 Si 0.913 3.087 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.268 1.268 16 S 2.551 3.449 17 O -0.956 6.956 18 O -0.986 6.986 19 C -0.595 4.595 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.114 4.114 26 C -0.110 4.110 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.270 0.730 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 -11.331 -8.484 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.306 3.694 4 O -0.388 6.388 5 C -0.172 4.172 6 C 0.003 3.997 7 N -0.672 5.672 8 C -0.432 4.432 9 H 0.108 0.892 10 C -0.166 4.166 11 N -0.485 5.485 12 Si 0.739 3.261 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.192 1.192 16 S 2.650 3.350 17 O -0.946 6.946 18 O -0.976 6.976 19 C -0.718 4.718 20 C -0.074 4.074 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.087 4.087 25 C -0.171 4.171 26 C -0.129 4.129 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.530 -10.098 -8.954 13.582 hybrid contribution -0.107 -0.906 0.991 1.347 sum 1.423 -11.003 -7.962 13.656 Atomic orbital electron populations 1.23174 0.77324 1.03037 1.02407 1.86537 1.22785 1.34434 1.84692 1.24085 0.92413 0.80948 0.71978 1.90666 1.67217 1.36197 1.44722 1.22124 0.85939 1.03960 1.05199 1.21109 0.81418 0.90667 1.06476 1.52605 1.11072 1.85629 1.17848 1.19032 1.08236 1.30611 0.85281 0.89154 1.25473 0.97243 0.93685 1.00220 1.69995 1.29498 1.18472 1.30485 0.86175 0.78569 0.79380 0.81999 1.20103 1.20753 1.19244 1.07988 0.75140 0.76459 0.75369 1.93466 1.52328 1.66649 1.82153 1.93433 1.60597 1.75406 1.68170 1.29877 1.09142 1.29841 1.02906 1.19148 0.93693 1.01599 0.92952 1.21164 1.00362 1.00163 0.91862 1.21102 0.94252 1.00099 0.97854 1.21046 0.94373 1.01362 0.97402 1.19904 0.96265 0.99554 0.92947 1.20797 0.91022 1.02576 1.02678 1.21086 0.93271 1.00022 0.98474 0.92148 0.88640 0.92103 0.89417 0.86776 0.86234 0.90693 0.92001 0.85124 0.84404 0.85400 0.85717 0.86011 0.90911 0.91357 0.91634 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.51 10.57 -39.27 -0.41 -5.93 16 3 C 0.46 8.25 7.96 36.00 0.29 8.53 16 4 O -0.50 -10.38 15.73 -18.75 -0.29 -10.68 16 5 C -0.13 -2.33 6.11 -27.89 -0.17 -2.50 16 6 C 0.13 2.95 4.55 -4.04 -0.02 2.93 16 7 N -0.84 -19.69 2.74 -59.91 -0.16 -19.86 16 8 C -0.30 -7.25 8.80 -15.06 -0.13 -7.39 16 9 H 0.09 2.08 7.91 -52.49 -0.42 1.66 16 10 C 0.04 1.08 5.00 -17.43 -0.09 0.99 16 11 N -0.85 -22.74 11.46 55.49 0.64 -22.11 16 12 Si 0.91 19.23 29.60 -169.99 -5.03 14.20 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 S 2.55 56.95 5.36 -107.50 -0.58 56.37 16 17 O -0.96 -24.63 17.30 -57.54 -1.00 -25.62 16 18 O -0.99 -23.99 16.44 -57.54 -0.95 -24.94 16 19 C -0.59 -9.82 6.30 36.01 0.23 -9.59 16 20 C -0.07 -1.18 5.14 -104.62 -0.54 -1.72 16 21 C -0.12 -1.74 9.70 -39.58 -0.38 -2.13 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.51 9.70 -39.59 -0.38 -1.90 16 24 C -0.09 -1.15 5.88 -104.63 -0.62 -1.76 16 25 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 26 C -0.11 -1.69 9.36 -39.59 -0.37 -2.06 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.09 1.29 7.26 -51.93 -0.38 0.91 16 31 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 32 H 0.12 3.01 5.52 -51.93 -0.29 2.73 16 33 H 0.07 1.75 6.72 -51.93 -0.35 1.40 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.13 1.82 7.21 -51.93 -0.37 1.44 16 36 H 0.14 2.04 8.08 -51.93 -0.42 1.62 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 42 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 43 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -33.83 379.77 -9.22 -43.06 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.00 Total: 7.56 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -1.16 Total: -17.79 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.47 Total: -41.96 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -2.65 Total: -67.16 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: 56.95 SS G_CDS: -0.58 Total: 56.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.83 -9.22 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.728 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds