Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99972 * 2 1 4 4 O 1.20822 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99960 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47093 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47294 * 180.02562 * 6 5 3 8 8 C 1.36940 * 119.99872 * 274.99888 * 7 6 5 9 9 H 1.08000 * 119.99935 * 141.30127 * 8 7 6 10 10 C 1.38815 * 120.00177 * 321.30275 * 8 7 6 11 11 N 1.31616 * 119.99731 * 338.96206 * 10 8 7 12 12 Si 1.86795 * 120.00090 * 158.96168 * 10 8 7 13 13 H 1.48497 * 109.46961 * 90.00033 * 12 10 8 14 14 H 1.48501 * 109.47194 * 209.99890 * 12 10 8 15 15 H 1.48502 * 109.47124 * 330.00134 * 12 10 8 16 16 S 1.65596 * 120.00082 * 94.99716 * 7 6 5 17 17 O 1.42103 * 104.27714 * 149.70619 * 16 7 6 18 18 O 1.42100 * 104.27658 * 21.85291 * 16 7 6 19 19 C 1.81402 * 104.44977 * 265.77862 * 16 7 6 20 20 C 1.50703 * 109.46983 * 180.02562 * 19 16 7 21 21 C 1.38260 * 119.99479 * 270.21301 * 20 19 16 22 22 C 1.38218 * 119.99615 * 180.25431 * 21 20 19 23 23 C 1.38253 * 119.99782 * 359.51113 * 22 21 20 24 24 C 1.38212 * 120.00433 * 0.27482 * 23 22 21 25 25 C 1.50700 * 120.00200 * 179.97438 * 24 23 22 26 26 C 1.38207 * 120.00535 * 89.99999 * 20 19 16 27 27 H 1.08998 * 109.47192 * 60.00337 * 1 2 3 28 28 H 1.09006 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47376 * 300.00280 * 1 2 3 30 30 H 1.09004 * 109.47324 * 59.99529 * 5 3 2 31 31 H 1.08998 * 109.46901 * 300.00117 * 5 3 2 32 32 H 1.08999 * 109.47655 * 59.99985 * 6 5 3 33 33 H 1.08998 * 109.47384 * 299.99872 * 6 5 3 34 34 H 0.97004 * 120.00138 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.46941 * 60.00283 * 19 16 7 36 36 H 1.08997 * 109.46934 * 299.99509 * 19 16 7 37 37 H 1.08000 * 120.00546 * 0.04140 * 21 20 19 38 38 H 1.08004 * 120.00029 * 179.78099 * 22 21 20 39 39 H 1.08003 * 120.00018 * 180.25389 * 23 22 21 40 40 H 1.08994 * 109.47265 * 90.00146 * 25 24 23 41 41 H 1.08994 * 109.47090 * 210.00344 * 25 24 23 42 42 H 1.09002 * 109.46910 * 330.00269 * 25 24 23 43 43 H 1.08001 * 119.99684 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1522 2.7521 1.1812 9 1 7.0841 2.2086 1.2328 10 6 5.6531 3.3828 2.3126 11 7 4.7813 4.3612 2.1898 12 14 6.2185 2.8431 4.0091 13 1 7.4163 3.6269 4.4042 14 1 5.1290 3.0751 4.9911 15 1 6.5599 1.3981 3.9806 16 16 6.2834 2.9861 -1.4290 17 8 7.4518 3.7152 -1.0789 18 8 5.3219 3.5288 -2.3236 19 6 6.7111 1.2893 -1.9068 20 6 7.4706 1.3102 -3.2083 21 6 6.7880 1.2342 -4.4082 22 6 7.4849 1.2481 -5.6018 23 6 8.8638 1.3482 -5.5959 24 6 9.5459 1.4287 -4.3965 25 6 11.0489 1.5372 -4.3902 26 6 8.8491 1.4098 -3.2026 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9564 0.7805 -0.8891 31 1 3.9556 0.7810 0.8908 32 1 3.6100 3.2368 0.8893 33 1 3.6108 3.2356 -0.8906 34 1 4.4322 4.8018 2.9803 35 1 5.7990 0.7049 -2.0274 36 1 7.3314 0.8390 -1.1318 37 1 5.7105 1.1605 -4.4129 38 1 6.9520 1.1852 -6.5390 39 1 9.4081 1.3632 -6.5287 40 1 11.3375 2.5879 -4.4154 41 1 11.4429 1.0738 -3.4857 42 1 11.4536 1.0282 -5.2651 43 1 9.3820 1.4731 -2.2653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867739375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = -152.676377 kcal Electronic energy + Delta-G solvation = -28094.898509 eV Core-core repulsion = 24038.683726 eV Total energy + Delta-G solvation = -4056.214783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -41.44617 -40.41380 -38.06884 -37.80635 -37.23321 -36.62564 -34.65551 -33.74980 -32.97464 -31.84898 -28.68350 -28.60822 -27.67168 -26.68896 -24.44747 -23.15351 -21.96885 -21.55264 -20.26583 -19.14739 -18.75572 -17.95402 -17.73094 -17.52927 -17.37170 -17.06757 -16.84426 -16.36637 -16.12765 -15.77862 -15.20859 -14.93398 -14.66914 -14.45799 -14.27798 -14.05352 -13.99127 -13.81416 -13.68575 -13.19795 -13.15374 -13.05930 -12.99381 -12.87039 -12.82132 -12.79000 -12.63475 -12.38359 -12.19613 -12.03452 -11.96283 -11.85218 -11.78542 -11.61494 -11.50118 -10.90827 -9.84935 -9.68193 -9.47212 -8.18000 -5.98291 -0.60074 0.37598 0.42388 1.21041 1.50815 1.52376 1.63767 1.72842 2.21412 2.55274 2.73960 2.97740 3.23451 3.38204 3.50321 3.83716 3.88391 3.99723 4.10299 4.19615 4.25683 4.32111 4.35650 4.36397 4.41170 4.49514 4.52529 4.67114 4.72481 4.77683 4.83702 4.88571 4.93193 5.07113 5.27745 5.34507 5.38480 5.45858 5.49729 5.49989 5.60778 5.84234 6.02855 6.45009 6.77751 7.10166 7.44285 8.84688 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.004320 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.216256 B = 6480.194275 C = 8446.977043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.540 6.540 5 C -0.126 4.126 6 C 0.132 3.868 7 N -0.853 5.853 8 C -0.308 4.308 9 H 0.104 0.896 10 C -0.007 4.007 11 N -0.894 5.894 12 Si 0.976 3.024 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.243 1.243 16 S 2.542 3.458 17 O -1.005 7.005 18 O -1.019 7.019 19 C -0.555 4.555 20 C -0.104 4.104 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.115 4.115 26 C -0.131 4.131 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.267 0.733 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -14.711 -9.985 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.165 4.165 6 C 0.004 3.996 7 N -0.683 5.683 8 C -0.443 4.443 9 H 0.122 0.878 10 C -0.212 4.212 11 N -0.533 5.533 12 Si 0.799 3.201 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.166 1.166 16 S 2.649 3.351 17 O -0.995 6.995 18 O -1.009 7.009 19 C -0.685 4.685 20 C -0.106 4.106 21 C -0.153 4.153 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.095 4.095 25 C -0.171 4.171 26 C -0.151 4.151 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.611 -13.450 -10.406 17.205 hybrid contribution -0.415 0.066 1.214 1.285 sum 2.195 -13.384 -9.192 16.385 Atomic orbital electron populations 1.23557 0.75077 1.05760 1.02340 1.86506 1.24866 1.32394 1.83910 1.24018 0.92442 0.81204 0.71078 1.90660 1.67993 1.37657 1.46682 1.21935 0.86339 1.00713 1.07509 1.20866 0.81169 0.93678 1.03854 1.52654 1.11345 1.86206 1.18072 1.19433 1.08524 1.30490 0.85837 0.87840 1.26365 0.97372 0.93518 1.03923 1.70148 1.31705 1.20339 1.31153 0.85215 0.77471 0.80110 0.77314 1.20697 1.21139 1.16650 1.07686 0.73941 0.78844 0.74664 1.93404 1.53188 1.70115 1.82746 1.93388 1.61321 1.77894 1.68284 1.29423 1.11266 1.23613 1.04221 1.19248 0.94254 1.04202 0.92916 1.21446 1.01064 1.00483 0.92313 1.21526 0.94841 0.98808 0.98343 1.21526 0.94450 0.99228 0.98444 1.20327 0.97979 0.98580 0.92618 1.20877 0.88960 1.03106 1.04164 1.21316 0.93331 1.00831 0.99593 0.92086 0.84473 0.92462 0.86017 0.85354 0.89412 0.92875 0.92393 0.82017 0.82294 0.84687 0.82705 0.82561 0.90708 0.90938 0.89148 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.13 10.57 -51.46 -0.54 -10.68 16 3 C 0.47 16.50 7.96 71.23 0.57 17.06 16 4 O -0.54 -22.98 15.73 21.98 0.35 -22.63 16 5 C -0.13 -4.34 6.11 29.84 0.18 -4.16 16 6 C 0.13 6.15 4.55 86.38 0.39 6.54 16 7 N -0.85 -40.83 2.74 -343.46 -0.94 -41.77 16 8 C -0.31 -15.34 8.80 84.03 0.74 -14.60 16 9 H 0.10 4.74 7.91 -2.91 -0.02 4.71 16 10 C -0.01 -0.37 5.00 84.86 0.42 0.05 16 11 N -0.89 -50.46 11.46 21.65 0.25 -50.21 16 12 Si 0.98 39.85 29.60 68.60 2.03 41.88 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.29 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 16 S 2.54 115.62 5.36 -56.49 -0.30 115.32 16 17 O -1.00 -53.56 17.30 -127.65 -2.21 -55.77 16 18 O -1.02 -51.25 16.44 -127.65 -2.10 -53.35 16 19 C -0.56 -17.42 6.30 71.24 0.45 -16.97 16 20 C -0.10 -3.24 5.14 -19.87 -0.10 -3.34 16 21 C -0.13 -3.72 9.70 22.27 0.22 -3.51 16 22 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 23 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 24 C -0.10 -2.28 5.88 -19.87 -0.12 -2.40 16 25 C -0.11 -1.99 10.01 71.24 0.71 -1.27 16 26 C -0.13 -3.87 9.36 22.27 0.21 -3.66 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.12 3.31 7.26 -2.38 -0.02 3.29 16 31 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.09 4.69 5.52 -2.39 -0.01 4.68 16 33 H 0.05 2.63 6.72 -2.39 -0.02 2.61 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.16 4.02 7.21 -2.39 -0.02 4.00 16 36 H 0.16 4.34 8.08 -2.39 -0.02 4.32 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 43 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -78.78 379.77 2.85 -75.93 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 1.01 Total: 30.47 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 5.31 Total: -29.19 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -0.69 Total: -91.98 kcal Atomic # 8 Polarization: -137.92 SS G_CDS: -4.51 Total: -142.43 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 115.62 SS G_CDS: -0.30 Total: 115.32 kcal Total: -78.78 2.85 -75.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.749 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.27 seconds