Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47260 * 300.00179 * 3 2 1 6 6 H 1.48505 * 109.47104 * 60.00274 * 3 2 1 7 7 C 1.39936 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99882 * 161.76906 * 7 2 1 9 9 C 1.41392 * 120.00461 * 341.77054 * 7 2 1 10 10 C 1.40735 * 120.24110 * 335.51962 * 9 7 2 11 11 C 1.37595 * 119.74537 * 180.27839 * 10 9 7 12 12 C 1.38654 * 120.25067 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.49904 * 0.02562 * 12 11 10 14 14 S 1.76203 * 119.87547 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40253 * 23.56499 * 14 13 12 16 16 O 1.42100 * 106.40112 * 156.48337 * 14 13 12 17 17 N 1.65595 * 107.21784 * 270.02339 * 14 13 12 18 18 C 1.46502 * 120.00176 * 65.00011 * 17 14 13 19 19 C 1.53005 * 109.47022 * 165.00051 * 18 17 14 20 20 O 1.42900 * 109.47302 * 65.00372 * 19 18 17 21 21 C 1.42892 * 114.00225 * 180.02562 * 20 19 18 22 22 H 1.09011 * 110.43326 * 328.90648 * 21 20 19 23 23 C 1.54807 * 110.49188 * 206.21856 * 21 20 19 24 24 C 1.54989 * 102.09421 * 220.43997 * 23 21 20 25 25 O 1.44383 * 103.49177 * 37.02170 * 24 23 21 26 26 C 1.43746 * 106.97264 * 319.94040 * 25 24 23 27 27 C 1.37635 * 120.25014 * 359.97438 * 13 12 11 28 28 H 0.97006 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.12871 * 0.25682 * 10 9 7 30 30 H 1.08000 * 119.87732 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.75492 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00307 * 244.99953 * 17 14 13 33 33 H 1.09001 * 109.47076 * 285.00120 * 18 17 14 34 34 H 1.08995 * 109.46963 * 44.99887 * 18 17 14 35 35 H 1.09007 * 109.46705 * 184.99740 * 19 18 17 36 36 H 1.09001 * 109.47200 * 304.99504 * 19 18 17 37 37 H 1.09004 * 110.90603 * 338.64199 * 23 21 20 38 38 H 1.09005 * 110.90815 * 102.23895 * 23 21 20 39 39 H 1.08999 * 110.62223 * 278.52206 * 24 23 21 40 40 H 1.09006 * 110.62242 * 155.52137 * 24 23 21 41 41 H 1.08997 * 109.87647 * 267.08663 * 26 25 24 42 42 H 1.09000 * 109.87630 * 145.93931 * 26 25 24 43 43 H 1.07997 * 120.13314 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0473 -1.2353 -0.2932 9 6 1.3542 -2.4059 0.3820 10 6 0.2288 -2.3588 1.2256 11 6 -0.3961 -3.5274 1.5961 12 6 0.0788 -4.7480 1.1410 13 6 1.1864 -4.8063 0.3097 14 16 1.7763 -6.3665 -0.2583 15 8 0.6743 -7.2610 -0.1907 16 8 2.4976 -6.1110 -1.4557 17 7 2.8839 -6.9045 0.8490 18 6 2.4582 -7.2285 2.2128 19 6 3.5533 -8.0382 2.9100 20 8 4.7214 -7.2289 3.0608 21 6 5.8103 -7.8941 3.7038 22 1 5.4390 -8.6289 4.4183 23 6 6.7327 -6.8687 4.4069 24 6 8.1424 -7.4305 4.0918 25 8 8.0102 -7.9373 2.7463 26 6 6.7218 -8.5691 2.6607 27 6 1.8273 -3.6502 -0.0737 28 1 -0.4850 0.8401 0.0004 29 1 -0.1428 -1.4091 1.5812 30 1 -1.2601 -3.4937 2.2431 31 1 -0.4181 -5.6603 1.4365 32 1 3.8145 -7.0051 0.5946 33 1 2.2798 -6.3066 2.7664 34 1 1.5399 -7.8144 2.1773 35 1 3.2015 -8.3549 3.8920 36 1 3.7942 -8.9158 2.3100 37 1 6.6058 -5.8741 3.9792 38 1 6.5508 -6.8545 5.4815 39 1 8.3980 -8.2349 4.7815 40 1 8.8894 -6.6376 4.1316 41 1 6.8150 -9.6322 2.8824 42 1 6.3073 -8.4316 1.6620 43 1 2.6899 -3.6978 -0.7218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921882790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = -149.996451 kcal Electronic energy + Delta-G solvation = -27376.517469 eV Core-core repulsion = 23320.418896 eV Total energy + Delta-G solvation = -4056.098573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94464 -37.74793 -37.61010 -36.63730 -35.28361 -34.91530 -33.82708 -31.61975 -30.06126 -29.77162 -29.30345 -28.26169 -25.47413 -23.36494 -22.44979 -21.86361 -21.61774 -20.96042 -19.12702 -17.99038 -17.63628 -17.11815 -16.68163 -16.39595 -15.95341 -15.87513 -15.28270 -15.14748 -14.82849 -14.73553 -14.32017 -13.76377 -13.49612 -13.41225 -13.31678 -13.11856 -12.57489 -12.37471 -12.25881 -11.95037 -11.89678 -11.69999 -11.55525 -11.51253 -11.39028 -11.33266 -11.18199 -11.02681 -11.01173 -10.85806 -10.57277 -10.20323 -9.79667 -9.71063 -9.66173 -9.33659 -9.15022 -8.01935 -7.68556 -6.91264 -4.51419 1.04898 2.21873 2.64312 3.01602 3.05229 3.08675 3.23123 3.59658 3.62480 3.84774 4.16506 4.26120 4.44795 4.52620 4.60153 4.72415 4.80832 4.88834 5.00461 5.05950 5.15219 5.20675 5.35808 5.39028 5.41181 5.48846 5.57486 5.68892 5.78707 6.00616 6.07937 6.19045 6.48910 6.68137 6.77627 6.86551 6.92855 7.04868 7.21645 7.26607 7.40508 7.73795 7.82820 7.96146 8.42180 8.68772 8.73797 10.04491 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003210 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.019900 B = 8721.414397 C =10356.487044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.151 4.151 13 C -0.630 4.630 14 S 2.690 3.310 15 O -0.977 6.977 16 O -0.971 6.971 17 N -1.118 6.118 18 C 0.123 3.877 19 C 0.053 3.947 20 O -0.365 6.365 21 C 0.056 3.944 22 H 0.076 0.924 23 C -0.154 4.154 24 C 0.046 3.954 25 O -0.373 6.373 26 C 0.023 3.977 27 C -0.123 4.123 28 H 0.283 0.717 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.417 0.583 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 -13.015 11.013 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.172 4.172 13 C -0.722 4.722 14 S 2.785 3.215 15 O -0.967 6.967 16 O -0.962 6.962 17 N -0.877 5.877 18 C -0.004 4.004 19 C -0.025 4.025 20 O -0.284 6.284 21 C -0.003 4.003 22 H 0.094 0.906 23 C -0.191 4.191 24 C -0.030 4.030 25 O -0.291 6.291 26 C -0.055 4.055 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.741 -13.115 10.050 18.693 hybrid contribution 0.338 1.132 0.634 1.341 sum 9.079 -11.983 10.684 18.444 Atomic orbital electron populations 1.69800 1.07683 1.29530 1.34816 1.25943 0.94767 1.01583 0.92046 0.86207 0.81067 0.80555 0.78655 1.18206 1.19837 1.19622 1.19650 0.98554 0.91032 1.39662 0.89871 1.17686 0.91785 0.92024 0.89680 1.21629 0.97706 0.97136 0.97427 1.20799 0.99312 0.93183 1.00736 1.20072 0.97471 0.97372 1.02263 1.29723 1.09202 1.17964 1.15329 1.01633 0.72721 0.74498 0.72602 1.93504 1.52690 1.63948 1.86554 1.93543 1.72907 1.86342 1.43372 1.55497 1.24207 1.83981 1.23994 1.21277 0.96269 1.00616 0.82210 1.22833 0.85979 0.93911 0.99795 1.88073 1.21843 1.38942 1.79561 1.23528 0.88265 0.94828 0.93682 0.90560 1.23234 0.93833 1.00897 1.01168 1.23553 0.97081 0.98143 0.84241 1.88925 1.34556 1.75842 1.29812 1.23780 0.84098 0.96206 1.01381 1.20758 1.00976 0.91702 1.00979 0.90622 0.85812 0.88429 0.87649 0.74946 0.90315 0.88864 0.91683 0.92318 0.88676 0.89505 0.92092 0.88456 0.91970 0.88714 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 10.98 55.55 0.61 -19.31 16 2 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.93 9.05 -37.75 -0.34 -12.27 16 8 H 0.08 2.08 7.91 -52.48 -0.42 1.66 16 9 C 0.09 2.39 5.57 -106.82 -0.60 1.80 16 10 C -0.12 -2.97 8.71 -38.87 -0.34 -3.31 16 11 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 12 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 13 C -0.63 -13.78 5.94 -39.66 -0.24 -14.02 16 14 S 2.69 50.32 5.73 -107.50 -0.62 49.71 16 15 O -0.98 -19.59 16.74 -57.17 -0.96 -20.55 16 16 O -0.97 -20.80 17.27 -57.17 -0.99 -21.79 16 17 N -1.12 -15.93 5.96 -10.61 -0.06 -15.99 16 18 C 0.12 1.46 6.61 -4.04 -0.03 1.43 16 19 C 0.05 0.48 5.99 37.16 0.22 0.71 16 20 O -0.37 -4.01 9.76 -35.23 -0.34 -4.35 16 21 C 0.06 0.48 3.51 -25.21 -0.09 0.39 16 22 H 0.08 0.49 7.86 -51.92 -0.41 0.08 16 23 C -0.15 -1.24 6.90 -24.73 -0.17 -1.41 16 24 C 0.05 0.36 7.72 38.21 0.29 0.66 16 25 O -0.37 -4.13 11.52 -35.23 -0.41 -4.53 16 26 C 0.02 0.21 7.52 37.73 0.28 0.49 16 27 C -0.12 -2.99 9.26 -38.87 -0.36 -3.35 16 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 29 H 0.12 3.14 6.17 -52.48 -0.32 2.81 16 30 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.11 2.00 7.60 -52.49 -0.40 1.60 16 32 H 0.42 5.35 8.51 -34.47 -0.29 5.06 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 35 H 0.07 0.45 8.10 -51.92 -0.42 0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.92 7.97 -51.93 -0.41 0.50 16 43 H 0.11 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -32.54 373.10 -10.38 -42.92 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.99 Total: 8.96 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -2.22 Total: -33.86 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.55 Total: -35.30 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -2.69 Total: -51.22 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -0.62 Total: 49.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.54 -10.38 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.077 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds