Wall clock time and date at job start Sat Apr 11 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47260 * 300.00179 * 3 2 1 6 6 H 1.48505 * 109.47104 * 60.00274 * 3 2 1 7 7 C 1.39936 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99882 * 161.76906 * 7 2 1 9 9 C 1.41392 * 120.00461 * 341.77054 * 7 2 1 10 10 C 1.40735 * 120.24110 * 335.51962 * 9 7 2 11 11 C 1.37595 * 119.74537 * 180.27839 * 10 9 7 12 12 C 1.38654 * 120.25067 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.49904 * 0.02562 * 12 11 10 14 14 S 1.76203 * 119.87547 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40253 * 23.56499 * 14 13 12 16 16 O 1.42100 * 106.40112 * 156.48337 * 14 13 12 17 17 N 1.65595 * 107.21784 * 270.02339 * 14 13 12 18 18 C 1.46502 * 120.00176 * 65.00011 * 17 14 13 19 19 C 1.53005 * 109.47022 * 165.00051 * 18 17 14 20 20 O 1.42900 * 109.47302 * 65.00372 * 19 18 17 21 21 C 1.42892 * 114.00225 * 180.02562 * 20 19 18 22 22 H 1.09011 * 110.43326 * 328.90648 * 21 20 19 23 23 C 1.54807 * 110.49188 * 206.21856 * 21 20 19 24 24 C 1.54989 * 102.09421 * 220.43997 * 23 21 20 25 25 O 1.44383 * 103.49177 * 37.02170 * 24 23 21 26 26 C 1.43746 * 106.97264 * 319.94040 * 25 24 23 27 27 C 1.37635 * 120.25014 * 359.97438 * 13 12 11 28 28 H 0.97006 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.12871 * 0.25682 * 10 9 7 30 30 H 1.08000 * 119.87732 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.75492 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00307 * 244.99953 * 17 14 13 33 33 H 1.09001 * 109.47076 * 285.00120 * 18 17 14 34 34 H 1.08995 * 109.46963 * 44.99887 * 18 17 14 35 35 H 1.09007 * 109.46705 * 184.99740 * 19 18 17 36 36 H 1.09001 * 109.47200 * 304.99504 * 19 18 17 37 37 H 1.09004 * 110.90603 * 338.64199 * 23 21 20 38 38 H 1.09005 * 110.90815 * 102.23895 * 23 21 20 39 39 H 1.08999 * 110.62223 * 278.52206 * 24 23 21 40 40 H 1.09006 * 110.62242 * 155.52137 * 24 23 21 41 41 H 1.08997 * 109.87647 * 267.08663 * 26 25 24 42 42 H 1.09000 * 109.87630 * 145.93931 * 26 25 24 43 43 H 1.07997 * 120.13314 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0473 -1.2353 -0.2932 9 6 1.3542 -2.4059 0.3820 10 6 0.2288 -2.3588 1.2256 11 6 -0.3961 -3.5274 1.5961 12 6 0.0788 -4.7480 1.1410 13 6 1.1864 -4.8063 0.3097 14 16 1.7763 -6.3665 -0.2583 15 8 0.6743 -7.2610 -0.1907 16 8 2.4976 -6.1110 -1.4557 17 7 2.8839 -6.9045 0.8490 18 6 2.4582 -7.2285 2.2128 19 6 3.5533 -8.0382 2.9100 20 8 4.7214 -7.2289 3.0608 21 6 5.8103 -7.8941 3.7038 22 1 5.4390 -8.6289 4.4183 23 6 6.7327 -6.8687 4.4069 24 6 8.1424 -7.4305 4.0918 25 8 8.0102 -7.9373 2.7463 26 6 6.7218 -8.5691 2.6607 27 6 1.8273 -3.6502 -0.0737 28 1 -0.4850 0.8401 0.0004 29 1 -0.1428 -1.4091 1.5812 30 1 -1.2601 -3.4937 2.2431 31 1 -0.4181 -5.6603 1.4365 32 1 3.8145 -7.0051 0.5946 33 1 2.2798 -6.3066 2.7664 34 1 1.5399 -7.8144 2.1773 35 1 3.2015 -8.3549 3.8920 36 1 3.7942 -8.9158 2.3100 37 1 6.6058 -5.8741 3.9792 38 1 6.5508 -6.8545 5.4815 39 1 8.3980 -8.2349 4.7815 40 1 8.8894 -6.6376 4.1316 41 1 6.8150 -9.6322 2.8824 42 1 6.3073 -8.4316 1.6620 43 1 2.6899 -3.6978 -0.7218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921882790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:11 Heat of formation + Delta-G solvation = -174.103455 kcal Electronic energy + Delta-G solvation = -27377.562828 eV Core-core repulsion = 23320.418896 eV Total energy + Delta-G solvation = -4057.143931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.61570 -39.44141 -38.53978 -38.21523 -36.90317 -35.97122 -35.66447 -32.32036 -31.91507 -31.58104 -30.03545 -29.07552 -27.35282 -24.09835 -23.66194 -23.22037 -22.76943 -22.26030 -20.63668 -19.65194 -18.52976 -18.31183 -17.73687 -17.50680 -17.41480 -16.84536 -16.73545 -16.50318 -16.07028 -15.94365 -15.38957 -15.21448 -15.03849 -14.55742 -14.35739 -14.30279 -13.84348 -13.70770 -13.39264 -13.27590 -13.18901 -13.07184 -13.05698 -12.98133 -12.84568 -12.59879 -12.58405 -12.39396 -12.20043 -12.13504 -11.65267 -11.55375 -11.37596 -11.14986 -10.86815 -10.44260 -10.37083 -9.84308 -9.55734 -8.74245 -6.45761 -0.47497 0.41533 0.84285 1.36360 1.43852 1.51949 2.13640 2.18210 2.54320 2.58966 2.80628 3.01108 3.47630 3.51876 3.55607 3.88733 3.94158 4.07939 4.21645 4.24053 4.32279 4.36791 4.45645 4.48579 4.55760 4.62511 4.77060 4.80116 4.83409 4.85039 4.90527 4.93622 5.03349 5.08912 5.09665 5.20516 5.41563 5.57048 5.86026 5.88629 5.93788 6.09073 6.12008 6.28896 6.52448 6.79255 6.84726 8.24311 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003210 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.019900 B = 8721.414397 C =10356.487044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.062 3.938 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.145 4.145 13 C -0.638 4.638 14 S 2.722 3.278 15 O -0.983 6.983 16 O -1.000 7.000 17 N -1.103 6.103 18 C 0.110 3.890 19 C 0.054 3.946 20 O -0.394 6.394 21 C 0.053 3.947 22 H 0.107 0.893 23 C -0.155 4.155 24 C 0.044 3.956 25 O -0.406 6.406 26 C 0.018 3.982 27 C -0.148 4.148 28 H 0.292 0.708 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.425 0.575 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -14.578 12.810 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.059 3.941 10 C -0.161 4.161 11 C -0.141 4.141 12 C -0.166 4.166 13 C -0.727 4.727 14 S 2.814 3.186 15 O -0.973 6.973 16 O -0.991 6.991 17 N -0.866 5.866 18 C -0.016 4.016 19 C -0.024 4.024 20 O -0.313 6.313 21 C -0.005 4.005 22 H 0.125 0.875 23 C -0.192 4.192 24 C -0.032 4.032 25 O -0.326 6.326 26 C -0.059 4.059 27 C -0.169 4.169 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.811 -14.662 11.861 20.815 hybrid contribution 0.298 1.448 0.129 1.484 sum 9.109 -13.214 11.989 20.033 Atomic orbital electron populations 1.69831 1.08980 1.30951 1.35175 1.26769 0.95540 1.04584 0.90992 0.85126 0.79356 0.75906 0.79158 1.18295 1.19045 1.18366 1.19883 0.98705 0.92446 1.41878 0.90476 1.18042 0.92716 0.92881 0.90465 1.21647 0.98278 0.97803 0.98383 1.21166 0.99791 0.92628 1.00561 1.20510 0.96824 0.98280 1.00986 1.30269 1.08964 1.19119 1.14316 1.00719 0.72603 0.73085 0.72228 1.93490 1.53748 1.63245 1.86831 1.93499 1.73429 1.86481 1.45649 1.55152 1.23914 1.82825 1.24679 1.21623 0.98294 1.01098 0.80576 1.22914 0.84778 0.93358 1.01312 1.88041 1.22843 1.40278 1.80169 1.23704 0.87601 0.95291 0.93856 0.87547 1.23257 0.94112 0.99505 1.02344 1.23737 0.97087 0.99024 0.83386 1.88881 1.35556 1.76362 1.31753 1.23896 0.83596 0.97372 1.01046 1.20811 1.01695 0.92382 1.02039 0.89723 0.86938 0.85300 0.84495 0.73926 0.91228 0.87312 0.88590 0.90728 0.91257 0.87268 0.89750 0.88121 0.89809 0.90081 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.38 10.98 21.82 0.24 -42.14 16 2 C 0.04 1.83 5.13 85.25 0.44 2.26 16 3 Si 0.98 37.90 29.60 68.60 2.03 39.93 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.50 -27.16 9.05 23.46 0.21 -26.95 16 8 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 9 C 0.06 3.37 5.57 -21.29 -0.12 3.25 16 10 C -0.14 -7.23 8.71 22.73 0.20 -7.04 16 11 C -0.12 -5.39 10.02 22.22 0.22 -5.17 16 12 C -0.15 -6.04 9.53 22.46 0.21 -5.83 16 13 C -0.64 -27.89 5.94 22.22 0.13 -27.76 16 14 S 2.72 99.53 5.73 -56.49 -0.32 99.21 16 15 O -0.98 -37.43 16.74 -128.00 -2.14 -39.57 16 16 O -1.00 -42.98 17.27 -128.00 -2.21 -45.19 16 17 N -1.10 -29.93 5.96 -187.48 -1.12 -31.05 16 18 C 0.11 2.35 6.61 86.38 0.57 2.92 16 19 C 0.05 0.83 5.99 71.98 0.43 1.26 16 20 O -0.39 -7.93 9.76 -148.98 -1.45 -9.38 16 21 C 0.05 0.79 3.51 31.58 0.11 0.90 16 22 H 0.11 0.93 7.86 -2.38 -0.02 0.91 16 23 C -0.15 -2.27 6.90 31.89 0.22 -2.05 16 24 C 0.04 0.62 7.72 72.66 0.56 1.18 16 25 O -0.41 -8.69 11.52 -148.98 -1.72 -10.41 16 26 C 0.02 0.30 7.52 72.35 0.54 0.84 16 27 C -0.15 -7.49 9.26 22.73 0.21 -7.28 16 28 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 29 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 30 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.14 4.79 7.60 -2.91 -0.02 4.77 16 32 H 0.42 10.49 8.51 -96.74 -0.82 9.66 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 2.01 7.75 -2.39 -0.02 1.99 16 35 H 0.10 0.91 8.10 -2.38 -0.02 0.90 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 38 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.52 7.97 -2.39 -0.02 1.50 16 43 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -72.31 373.10 -2.54 -74.85 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.21 Total: 33.20 kcal Atomic # 6 Polarization: -73.39 SS G_CDS: 3.95 Total: -69.44 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.88 Total: -73.19 kcal Atomic # 8 Polarization: -97.03 SS G_CDS: -7.52 Total: -104.56 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 99.53 SS G_CDS: -0.32 Total: 99.21 kcal Total: -72.31 -2.54 -74.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.249 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds