Wall clock time and date at job start Sat Apr 11 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46936 * 119.99987 * 3 2 1 6 6 H 1.48506 * 109.46764 * 239.99835 * 3 2 1 7 7 C 1.39951 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99401 * 154.67755 * 7 2 1 9 9 C 1.41393 * 120.00212 * 334.68095 * 7 2 1 10 10 C 1.40727 * 120.24306 * 154.76158 * 9 7 2 11 11 C 1.37597 * 119.74748 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24696 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.49916 * 0.02562 * 12 11 10 14 14 S 1.76208 * 119.87493 * 179.97438 * 13 12 11 15 15 O 1.42103 * 106.40045 * 203.53788 * 14 13 12 16 16 O 1.42102 * 106.39913 * 336.46062 * 14 13 12 17 17 N 1.65600 * 107.21575 * 89.99973 * 14 13 12 18 18 C 1.46498 * 120.00277 * 65.00540 * 17 14 13 19 19 C 1.52998 * 109.47210 * 164.99666 * 18 17 14 20 20 O 1.42909 * 109.47229 * 64.99890 * 19 18 17 21 21 C 1.42900 * 113.99721 * 179.97438 * 20 19 18 22 22 H 1.08998 * 110.46034 * 27.39690 * 21 20 19 23 23 C 1.54510 * 110.50503 * 150.00040 * 21 20 19 24 24 C 1.54475 * 104.06386 * 118.64606 * 23 21 20 25 25 O 1.44430 * 104.80196 * 23.97392 * 24 23 21 26 26 C 1.44422 * 105.27562 * 319.48992 * 25 24 23 27 27 C 1.37641 * 120.25117 * 359.66833 * 13 12 11 28 28 H 0.97001 * 120.00120 * 174.20895 * 1 2 3 29 29 H 1.07998 * 120.12818 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.87931 * 180.02562 * 11 10 9 31 31 H 1.07992 * 119.75150 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00188 * 244.99694 * 17 14 13 33 33 H 1.09008 * 109.46506 * 284.99434 * 18 17 14 34 34 H 1.09000 * 109.47619 * 44.99068 * 18 17 14 35 35 H 1.09001 * 109.47016 * 184.99286 * 19 18 17 36 36 H 1.08992 * 109.47417 * 304.99566 * 19 18 17 37 37 H 1.09003 * 110.50782 * 237.28547 * 23 21 20 38 38 H 1.08995 * 110.51706 * 359.97438 * 23 21 20 39 39 H 1.09002 * 110.37579 * 142.80298 * 24 23 21 40 40 H 1.08999 * 110.37144 * 265.03599 * 24 23 21 41 41 H 1.08999 * 110.37070 * 281.68260 * 26 25 24 42 42 H 1.08999 * 110.37326 * 159.34582 * 26 25 24 43 43 H 1.08000 * 120.13209 * 180.32023 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6963 -1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0101 -1.2571 -0.3995 9 6 1.4028 -2.3775 0.5247 10 6 1.8141 -3.6491 0.0841 11 6 1.2179 -4.7765 0.6006 12 6 0.2151 -4.6630 1.5515 13 6 -0.1987 -3.4155 1.9920 14 16 -1.4750 -3.2904 3.2005 15 8 -2.0491 -1.9998 3.0454 16 8 -2.2287 -4.4919 3.1139 17 7 -0.7453 -3.3020 4.6870 18 6 0.1397 -2.2018 5.0773 19 6 0.3792 -2.2511 6.5876 20 8 1.0917 -3.4450 6.9182 21 6 1.3686 -3.5892 8.3127 22 1 0.6185 -3.0665 8.9062 23 6 1.4222 -5.0834 8.7022 24 6 2.8637 -5.2851 9.2193 25 8 3.2906 -3.9722 9.6436 26 6 2.7842 -3.0648 8.6406 27 6 0.3880 -2.2745 1.4938 28 1 -0.4850 -0.8358 -0.0848 29 1 2.5941 -3.7399 -0.6574 30 1 1.5321 -5.7535 0.2643 31 1 -0.2477 -5.5531 1.9512 32 1 -0.9040 -4.0374 5.2994 33 1 1.0917 -2.2986 4.5551 34 1 -0.3241 -1.2513 4.8138 35 1 0.9643 -1.3830 6.8912 36 1 -0.5785 -2.2437 7.1078 37 1 0.7002 -5.2989 9.4899 38 1 1.2371 -5.7121 7.8312 39 1 2.8715 -5.9771 10.0615 40 1 3.5056 -5.6546 8.4196 41 1 3.4142 -3.0920 7.7515 42 1 2.7308 -2.0513 9.0380 43 1 0.0676 -1.3037 1.8422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921882792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:15 Heat of formation + Delta-G solvation = -155.188202 kcal Electronic energy + Delta-G solvation = -27720.585144 eV Core-core repulsion = 23664.261440 eV Total energy + Delta-G solvation = -4056.323704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.92532 -37.88248 -37.73022 -36.66242 -35.30294 -34.91808 -34.05102 -31.58835 -30.29150 -29.46690 -29.24270 -28.24638 -25.31622 -23.33027 -22.66090 -21.94909 -21.47651 -21.20397 -19.17288 -18.32862 -17.54607 -17.18312 -16.80148 -16.27996 -16.17676 -15.59224 -15.32814 -15.05017 -14.89516 -14.62662 -14.21398 -13.97191 -13.72682 -13.49868 -13.29269 -13.14812 -12.66420 -12.49232 -12.20770 -12.14857 -11.75978 -11.62339 -11.53183 -11.50820 -11.44836 -11.25338 -11.20994 -11.17423 -10.97740 -10.68409 -10.47183 -10.21417 -9.89457 -9.76754 -9.69292 -9.20692 -9.12215 -8.28894 -7.83466 -7.33992 -4.61493 1.00897 2.03850 2.59323 3.09269 3.14523 3.19271 3.30222 3.55395 3.78031 3.93213 4.19678 4.21952 4.39561 4.43078 4.59740 4.76365 4.89759 4.91695 4.99352 5.07908 5.20109 5.22348 5.35642 5.39614 5.41923 5.54127 5.57677 5.62620 5.77641 5.90059 6.04998 6.14418 6.36305 6.37351 6.59470 6.74955 6.94467 7.03578 7.20011 7.27153 7.48296 7.55711 7.58707 7.89988 8.01200 8.50421 8.66801 9.92074 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003431 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.878980 B = 8158.805219 C = 9107.355523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.034 3.966 3 Si 1.066 2.934 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.078 3.922 10 C -0.187 4.187 11 C -0.097 4.097 12 C -0.166 4.166 13 C -0.620 4.620 14 S 2.687 3.313 15 O -0.965 6.965 16 O -0.975 6.975 17 N -1.117 6.117 18 C 0.120 3.880 19 C 0.055 3.945 20 O -0.369 6.369 21 C 0.055 3.945 22 H 0.077 0.923 23 C -0.157 4.157 24 C 0.045 3.955 25 O -0.374 6.374 26 C 0.023 3.977 27 C -0.121 4.121 28 H 0.301 0.699 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -4.090 15.622 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.189 4.189 3 Si 0.889 3.111 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.074 3.926 10 C -0.207 4.207 11 C -0.116 4.116 12 C -0.187 4.187 13 C -0.712 4.712 14 S 2.782 3.218 15 O -0.954 6.954 16 O -0.966 6.966 17 N -0.876 5.876 18 C -0.006 4.006 19 C -0.023 4.023 20 O -0.288 6.288 21 C -0.003 4.003 22 H 0.096 0.904 23 C -0.195 4.195 24 C -0.032 4.032 25 O -0.293 6.293 26 C -0.054 4.054 27 C -0.142 4.142 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.075 -2.280 15.476 15.780 hybrid contribution 0.722 -2.064 -0.204 2.196 sum 2.796 -4.344 15.272 16.122 Atomic orbital electron populations 1.70490 1.08119 1.34501 1.27422 1.27137 0.95656 1.04525 0.91578 0.83620 0.75646 0.73764 0.78086 1.19576 1.19832 1.20057 1.20589 1.03225 0.93919 1.36915 0.90228 1.17733 0.91340 0.92983 0.90540 1.21192 1.04057 0.92666 1.02757 1.20685 0.96645 0.97115 0.97170 1.19984 1.01350 0.94007 1.03360 1.29889 1.21214 1.00270 1.19798 1.01774 0.74101 0.73216 0.72713 1.93567 1.75342 1.40984 1.85554 1.93520 1.69079 1.47732 1.86248 1.55473 1.64614 1.32725 1.34785 1.21323 0.95084 0.90309 0.93884 1.22833 0.95961 0.87751 0.95776 1.88025 1.76256 1.41864 1.22636 1.23492 0.96796 0.96677 0.83383 0.90449 1.23042 0.98104 0.95793 1.02521 1.23417 0.93657 0.86047 1.00032 1.89136 1.76907 1.16889 1.46353 1.23972 0.94110 0.94528 0.92834 1.21004 0.99363 0.95578 0.98261 0.88546 0.88212 0.88317 0.87487 0.75096 0.90277 0.88583 0.91575 0.92138 0.89827 0.88762 0.88893 0.91759 0.90790 0.88788 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.61 12.32 55.55 0.68 -19.92 16 2 C 0.03 0.84 4.94 -17.34 -0.09 0.75 16 3 Si 1.07 20.65 30.00 -169.99 -5.10 15.55 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.52 -13.14 8.99 -37.74 -0.34 -13.48 16 8 H 0.08 1.94 7.96 -52.49 -0.42 1.52 16 9 C 0.08 1.98 5.30 -106.83 -0.57 1.41 16 10 C -0.19 -4.37 9.80 -38.88 -0.38 -4.75 16 11 C -0.10 -2.09 10.02 -39.66 -0.40 -2.49 16 12 C -0.17 -3.62 9.53 -39.29 -0.37 -3.99 16 13 C -0.62 -13.82 5.94 -39.66 -0.24 -14.06 16 14 S 2.69 52.26 5.73 -107.50 -0.62 51.64 16 15 O -0.96 -21.35 16.74 -57.17 -0.96 -22.30 16 16 O -0.98 -20.47 17.27 -57.17 -0.99 -21.46 16 17 N -1.12 -16.59 5.96 -10.61 -0.06 -16.65 16 18 C 0.12 1.62 6.61 -4.04 -0.03 1.60 16 19 C 0.05 0.56 5.97 37.16 0.22 0.78 16 20 O -0.37 -4.11 9.78 -35.23 -0.34 -4.45 16 21 C 0.06 0.50 3.61 -25.16 -0.09 0.41 16 22 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 23 C -0.16 -1.27 6.90 -25.17 -0.17 -1.45 16 24 C 0.05 0.38 7.63 37.93 0.29 0.67 16 25 O -0.37 -3.99 11.65 -35.23 -0.41 -4.40 16 26 C 0.02 0.21 7.38 37.93 0.28 0.49 16 27 C -0.12 -2.97 7.41 -38.87 -0.29 -3.25 16 28 H 0.30 8.21 6.68 -40.82 -0.27 7.94 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.11 2.13 7.60 -52.49 -0.40 1.73 16 32 H 0.42 5.28 8.51 -34.47 -0.29 4.99 16 33 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 34 H 0.10 1.29 7.75 -51.93 -0.40 0.89 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.54 8.11 -51.93 -0.42 0.11 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 3.12 6.04 -52.49 -0.32 2.80 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -31.98 372.31 -10.29 -42.28 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.94 Total: 11.47 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: -2.17 Total: -37.36 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.62 Total: -36.58 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -2.70 Total: -52.62 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.10 Total: 15.55 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.62 Total: 51.64 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.98 -10.29 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.913 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds