Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46936 * 119.99987 * 3 2 1 6 6 H 1.48506 * 109.46764 * 239.99835 * 3 2 1 7 7 C 1.39951 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99401 * 154.67755 * 7 2 1 9 9 C 1.41393 * 120.00212 * 334.68095 * 7 2 1 10 10 C 1.40727 * 120.24306 * 154.76158 * 9 7 2 11 11 C 1.37597 * 119.74748 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24696 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.49916 * 0.02562 * 12 11 10 14 14 S 1.76208 * 119.87493 * 179.97438 * 13 12 11 15 15 O 1.42103 * 106.40045 * 203.53788 * 14 13 12 16 16 O 1.42102 * 106.39913 * 336.46062 * 14 13 12 17 17 N 1.65600 * 107.21575 * 89.99973 * 14 13 12 18 18 C 1.46498 * 120.00277 * 65.00540 * 17 14 13 19 19 C 1.52998 * 109.47210 * 164.99666 * 18 17 14 20 20 O 1.42909 * 109.47229 * 64.99890 * 19 18 17 21 21 C 1.42900 * 113.99721 * 179.97438 * 20 19 18 22 22 H 1.08998 * 110.46034 * 27.39690 * 21 20 19 23 23 C 1.54510 * 110.50503 * 150.00040 * 21 20 19 24 24 C 1.54475 * 104.06386 * 118.64606 * 23 21 20 25 25 O 1.44430 * 104.80196 * 23.97392 * 24 23 21 26 26 C 1.44422 * 105.27562 * 319.48992 * 25 24 23 27 27 C 1.37641 * 120.25117 * 359.66833 * 13 12 11 28 28 H 0.97001 * 120.00120 * 174.20895 * 1 2 3 29 29 H 1.07998 * 120.12818 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.87931 * 180.02562 * 11 10 9 31 31 H 1.07992 * 119.75150 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00188 * 244.99694 * 17 14 13 33 33 H 1.09008 * 109.46506 * 284.99434 * 18 17 14 34 34 H 1.09000 * 109.47619 * 44.99068 * 18 17 14 35 35 H 1.09001 * 109.47016 * 184.99286 * 19 18 17 36 36 H 1.08992 * 109.47417 * 304.99566 * 19 18 17 37 37 H 1.09003 * 110.50782 * 237.28547 * 23 21 20 38 38 H 1.08995 * 110.51706 * 359.97438 * 23 21 20 39 39 H 1.09002 * 110.37579 * 142.80298 * 24 23 21 40 40 H 1.08999 * 110.37144 * 265.03599 * 24 23 21 41 41 H 1.08999 * 110.37070 * 281.68260 * 26 25 24 42 42 H 1.08999 * 110.37326 * 159.34582 * 26 25 24 43 43 H 1.08000 * 120.13209 * 180.32023 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6963 -1.2126 7 6 2.0080 -1.2120 0.0005 8 1 3.0101 -1.2571 -0.3995 9 6 1.4028 -2.3775 0.5247 10 6 1.8141 -3.6491 0.0841 11 6 1.2179 -4.7765 0.6006 12 6 0.2151 -4.6630 1.5515 13 6 -0.1987 -3.4155 1.9920 14 16 -1.4750 -3.2904 3.2005 15 8 -2.0491 -1.9998 3.0454 16 8 -2.2287 -4.4919 3.1139 17 7 -0.7453 -3.3020 4.6870 18 6 0.1397 -2.2018 5.0773 19 6 0.3792 -2.2511 6.5876 20 8 1.0917 -3.4450 6.9182 21 6 1.3686 -3.5892 8.3127 22 1 0.6185 -3.0665 8.9062 23 6 1.4222 -5.0834 8.7022 24 6 2.8637 -5.2851 9.2193 25 8 3.2906 -3.9722 9.6436 26 6 2.7842 -3.0648 8.6406 27 6 0.3880 -2.2745 1.4938 28 1 -0.4850 -0.8358 -0.0848 29 1 2.5941 -3.7399 -0.6574 30 1 1.5321 -5.7535 0.2643 31 1 -0.2477 -5.5531 1.9512 32 1 -0.9040 -4.0374 5.2994 33 1 1.0917 -2.2986 4.5551 34 1 -0.3241 -1.2513 4.8138 35 1 0.9643 -1.3830 6.8912 36 1 -0.5785 -2.2437 7.1078 37 1 0.7002 -5.2989 9.4899 38 1 1.2371 -5.7121 7.8312 39 1 2.8715 -5.9771 10.0615 40 1 3.5056 -5.6546 8.4196 41 1 3.4142 -3.0920 7.7515 42 1 2.7308 -2.0513 9.0380 43 1 0.0676 -1.3037 1.8422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921882792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -178.527518 kcal Electronic energy + Delta-G solvation = -27721.597213 eV Core-core repulsion = 23664.261440 eV Total energy + Delta-G solvation = -4057.335773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63915 -39.68820 -38.60894 -38.29819 -36.98533 -36.06264 -35.88289 -32.31764 -32.10019 -31.29229 -30.04200 -29.13728 -27.18960 -24.06943 -23.74381 -23.58229 -23.00796 -22.15343 -20.76541 -20.01058 -18.65892 -18.34945 -17.89494 -17.69937 -17.25817 -16.72437 -16.61578 -16.22250 -16.10156 -15.86768 -15.81078 -15.54427 -15.16037 -14.55820 -14.35630 -14.26849 -14.01577 -13.96963 -13.66232 -13.34751 -13.24988 -13.17124 -13.03221 -12.99256 -12.81525 -12.53628 -12.39983 -12.33909 -12.18934 -11.97863 -11.68077 -11.64197 -11.37481 -10.96838 -10.92314 -10.53949 -10.50898 -10.09505 -9.68978 -9.26061 -6.55618 -0.57193 0.23428 0.77624 1.51235 1.59561 1.80395 2.04663 2.32500 2.46147 2.49723 2.71746 3.10577 3.34519 3.39207 3.55630 3.77198 3.89264 3.97993 4.13221 4.21595 4.26049 4.30018 4.37197 4.41137 4.49106 4.55921 4.61348 4.71896 4.77755 4.79485 4.80452 4.92329 4.93866 4.99147 5.02628 5.19864 5.42030 5.60170 5.68002 5.68312 5.71920 6.02404 6.07499 6.16225 6.22142 6.62494 6.81017 7.97583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010450 B = 0.003431 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.878980 B = 8158.805219 C = 9107.355523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.002 3.998 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.049 3.951 10 C -0.197 4.197 11 C -0.098 4.098 12 C -0.164 4.164 13 C -0.632 4.632 14 S 2.714 3.286 15 O -0.992 6.992 16 O -0.988 6.988 17 N -1.097 6.097 18 C 0.111 3.889 19 C 0.059 3.941 20 O -0.388 6.388 21 C 0.052 3.948 22 H 0.097 0.903 23 C -0.155 4.155 24 C 0.040 3.960 25 O -0.393 6.393 26 C 0.020 3.980 27 C -0.138 4.138 28 H 0.282 0.718 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.429 0.571 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -4.781 17.328 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.215 4.215 3 Si 0.931 3.069 4 H -0.198 1.198 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.099 0.901 9 C 0.046 3.954 10 C -0.217 4.217 11 C -0.117 4.117 12 C -0.185 4.185 13 C -0.721 4.721 14 S 2.807 3.193 15 O -0.982 6.982 16 O -0.978 6.978 17 N -0.861 5.861 18 C -0.015 4.015 19 C -0.019 4.019 20 O -0.308 6.308 21 C -0.006 4.006 22 H 0.115 0.885 23 C -0.193 4.193 24 C -0.036 4.036 25 O -0.313 6.313 26 C -0.057 4.057 27 C -0.159 4.159 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.266 0.734 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.517 -3.015 17.163 17.607 hybrid contribution 0.595 -2.065 -0.656 2.247 sum 3.112 -5.080 16.507 17.549 Atomic orbital electron populations 1.70618 1.09092 1.33192 1.30624 1.28550 0.95500 1.07731 0.89713 0.83053 0.74789 0.69597 0.79471 1.19769 1.18099 1.18066 1.20794 1.03573 0.94884 1.38620 0.90121 1.18118 0.92085 0.94074 0.91128 1.21475 1.04455 0.92679 1.03094 1.21112 0.95884 0.98301 0.96391 1.20454 1.00811 0.94587 1.02603 1.30349 1.21363 0.99906 1.20513 1.00920 0.73270 0.72195 0.72960 1.93533 1.75917 1.42445 1.86298 1.93492 1.69447 1.48064 1.86803 1.55048 1.64408 1.33719 1.32883 1.21508 0.93908 0.89540 0.96512 1.22834 0.97435 0.88473 0.93118 1.87993 1.76507 1.42149 1.24105 1.23643 0.96953 0.97480 0.82511 0.88480 1.23071 0.98273 0.95137 1.02801 1.23564 0.93766 0.85571 1.00701 1.89115 1.77370 1.17921 1.46853 1.24032 0.94154 0.95232 0.92282 1.20874 1.00297 0.95676 0.99050 0.90610 0.87072 0.84495 0.85116 0.73432 0.91725 0.88800 0.89344 0.90104 0.88038 0.89373 0.87079 0.92293 0.92168 0.87314 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.49 12.32 21.83 0.27 -44.22 16 2 C 0.00 0.08 4.94 85.26 0.42 0.50 16 3 Si 1.11 41.77 30.00 68.60 2.06 43.83 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 7 C -0.55 -28.69 8.99 23.46 0.21 -28.48 16 8 H 0.08 4.02 7.96 -2.91 -0.02 4.00 16 9 C 0.05 2.57 5.30 -21.29 -0.11 2.46 16 10 C -0.20 -9.20 9.80 22.73 0.22 -8.98 16 11 C -0.10 -4.06 10.02 22.22 0.22 -3.84 16 12 C -0.16 -6.91 9.53 22.46 0.21 -6.69 16 13 C -0.63 -28.23 5.94 22.22 0.13 -28.09 16 14 S 2.71 104.41 5.73 -56.49 -0.32 104.08 16 15 O -0.99 -44.44 16.74 -128.00 -2.14 -46.58 16 16 O -0.99 -40.16 17.27 -128.00 -2.21 -42.37 16 17 N -1.10 -31.21 5.96 -187.49 -1.12 -32.33 16 18 C 0.11 2.91 6.61 86.38 0.57 3.48 16 19 C 0.06 1.07 5.97 71.98 0.43 1.50 16 20 O -0.39 -7.86 9.78 -148.98 -1.46 -9.32 16 21 C 0.05 0.82 3.61 31.61 0.11 0.94 16 22 H 0.10 1.15 7.82 -2.39 -0.02 1.13 16 23 C -0.16 -2.18 6.90 31.61 0.22 -1.96 16 24 C 0.04 0.61 7.63 72.48 0.55 1.16 16 25 O -0.39 -7.84 11.65 -148.98 -1.74 -9.58 16 26 C 0.02 0.35 7.38 72.48 0.53 0.88 16 27 C -0.14 -6.97 7.41 22.73 0.17 -6.80 16 28 H 0.28 16.24 6.68 -92.71 -0.62 15.63 16 29 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 30 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.13 4.86 7.60 -2.91 -0.02 4.83 16 32 H 0.43 10.00 8.51 -96.74 -0.82 9.18 16 33 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 2.51 7.75 -2.39 -0.02 2.49 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.17 8.11 -2.39 -0.02 1.15 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.35 8.00 -2.39 -0.02 1.33 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 5.68 6.04 -2.91 -0.02 5.66 16 Total: -1.00 -70.16 372.31 -2.40 -72.57 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.36 Total: 37.85 kcal Atomic # 6 Polarization: -77.83 SS G_CDS: 3.90 Total: -73.93 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -0.85 Total: -76.55 kcal Atomic # 8 Polarization: -100.31 SS G_CDS: -7.55 Total: -107.85 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.06 Total: 43.83 kcal Atomic # 16 Polarization: 104.41 SS G_CDS: -0.32 Total: 104.08 kcal Total: -70.16 -2.40 -72.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921882792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.960 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds