Wall clock time and date at job start Sat Apr 11 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99680 * 2 1 4 4 H 1.48498 * 109.47042 * 90.02116 * 3 2 1 5 5 H 1.48500 * 109.46622 * 210.01988 * 3 2 1 6 6 H 1.48495 * 109.46894 * 330.01768 * 3 2 1 7 7 C 1.37877 * 120.00135 * 180.26853 * 2 1 3 8 8 H 1.07998 * 120.00286 * 4.08673 * 7 2 1 9 9 C 1.50697 * 119.99978 * 184.08280 * 7 2 1 10 10 H 1.08998 * 109.47150 * 24.72665 * 9 7 2 11 11 N 1.46504 * 109.47393 * 264.72776 * 9 7 2 12 12 C 1.34772 * 120.00030 * 154.99694 * 11 9 7 13 13 O 1.21282 * 120.00202 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99922 * 179.97438 * 12 11 9 15 15 C 1.52999 * 109.47424 * 179.97438 * 14 12 11 16 16 N 1.46496 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.36034 * 126.34800 * 264.69155 * 16 15 14 18 18 N 1.30111 * 110.10080 * 179.87865 * 17 16 15 19 19 C 1.35786 * 109.63837 * 0.38865 * 18 17 16 20 20 C 1.39745 * 133.60058 * 179.75923 * 19 18 17 21 21 C 1.36594 * 119.88745 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.67268 * 359.97438 * 21 20 19 23 23 C 1.37860 * 120.44908 * 0.04123 * 22 21 20 24 24 C 1.38047 * 126.34756 * 85.00255 * 16 15 14 25 25 C 1.52998 * 109.47382 * 144.72878 * 9 7 2 26 26 F 1.39901 * 109.47085 * 65.17407 * 25 9 7 27 27 F 1.39897 * 109.47610 * 185.17848 * 25 9 7 28 28 F 1.39904 * 109.46956 * 305.17818 * 25 9 7 29 29 H 0.97003 * 120.00068 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99755 * 335.00683 * 11 9 7 31 31 H 1.09001 * 109.47033 * 300.00529 * 14 12 11 32 32 H 1.09001 * 109.46912 * 60.00662 * 14 12 11 33 33 H 1.08994 * 109.46966 * 300.00690 * 15 14 12 34 34 H 1.09009 * 109.46646 * 60.00109 * 15 14 12 35 35 H 1.08006 * 124.95456 * 0.02562 * 17 16 15 36 36 H 1.08001 * 120.05578 * 359.97438 * 20 19 18 37 37 H 1.07998 * 119.66886 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.78117 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.15781 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4970 2.0463 1.4001 5 1 3.5464 1.4404 -0.7005 6 1 1.4462 2.6528 -0.6996 7 6 2.0045 -1.1940 -0.0056 8 1 1.4667 -2.1278 -0.0766 9 6 3.5086 -1.1961 0.0873 10 1 3.8437 -0.2812 0.5760 11 7 4.0811 -1.2682 -1.2593 12 6 5.3203 -0.7918 -1.4912 13 8 5.9618 -0.3038 -0.5849 14 6 5.9093 -0.8665 -2.8763 15 6 7.3144 -0.2612 -2.8664 16 7 7.8868 -0.3332 -4.2130 17 6 8.7069 -1.3084 -4.6893 18 7 9.0251 -1.0603 -5.9264 19 6 8.4369 0.0966 -6.3256 20 6 8.4420 0.8170 -7.5231 21 6 7.7324 1.9801 -7.6206 22 6 7.0029 2.4570 -6.5407 23 6 6.9835 1.7633 -5.3496 24 6 7.6986 0.5790 -5.2319 25 6 3.9677 -2.4070 0.9020 26 9 3.6411 -3.5816 0.2158 27 9 5.3528 -2.3457 1.0886 28 9 3.3287 -2.4011 2.1466 29 1 -0.4850 0.8401 -0.0004 30 1 3.5681 -1.6586 -1.9841 31 1 5.9643 -1.9083 -3.1921 32 1 5.2791 -0.3094 -3.5696 33 1 7.2590 0.7806 -2.5508 34 1 7.9449 -0.8178 -2.1729 35 1 9.0431 -2.1650 -4.1240 36 1 9.0067 0.4552 -8.3696 37 1 7.7392 2.5342 -8.5476 38 1 6.4467 3.3781 -6.6339 39 1 6.4145 2.1389 -4.5121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:40 Heat of formation + Delta-G solvation = -125.007829 kcal Electronic energy + Delta-G solvation = -29489.836947 eV Core-core repulsion = 24789.814021 eV Total energy + Delta-G solvation = -4700.022926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.16730 -46.69865 -46.63821 -42.27500 -39.36665 -37.48607 -35.28692 -34.67834 -32.72666 -31.55529 -30.11596 -29.45373 -28.84240 -25.09028 -24.70102 -23.39312 -22.20412 -21.49348 -20.58656 -20.05218 -18.34772 -17.67094 -17.46334 -17.38910 -17.00556 -16.67111 -16.10391 -15.95178 -15.72267 -15.34965 -15.12898 -14.30326 -14.08746 -13.98881 -13.73637 -13.59199 -13.55245 -13.20817 -13.13111 -13.06373 -12.86000 -12.81102 -12.74340 -12.60686 -12.18923 -11.91658 -11.79006 -11.61413 -11.44284 -11.22518 -10.85016 -10.56778 -10.29330 -10.08187 -9.91209 -9.66389 -9.10571 -8.60858 -8.51300 -8.25084 -6.63961 -4.79971 0.82087 1.37918 2.40206 2.66468 2.88086 2.99725 3.11062 3.16538 3.52796 3.75063 3.81544 3.98405 4.13267 4.40475 4.51393 4.61179 4.70790 4.83625 4.88490 4.94585 5.06381 5.14197 5.21343 5.24453 5.27759 5.30644 5.46383 5.50999 5.60829 5.66350 6.00973 6.15248 6.29535 6.36810 6.39296 6.71689 6.76288 6.94256 6.97570 7.71793 7.72444 8.10168 8.41059 8.59475 8.90942 10.44448 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.003253 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.310955 B = 8605.058422 C = 9931.141818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.099 3.901 3 Si 0.871 3.129 4 H -0.267 1.267 5 H -0.255 1.255 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.094 0.906 9 C 0.204 3.796 10 H 0.090 0.910 11 N -0.709 5.709 12 C 0.505 3.495 13 O -0.546 6.546 14 C -0.161 4.161 15 C 0.127 3.873 16 N -0.489 5.489 17 C 0.263 3.737 18 N -0.501 5.501 19 C 0.043 3.957 20 C -0.067 4.067 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.107 4.107 24 C 0.048 3.952 25 C 0.439 3.561 26 F -0.192 7.192 27 F -0.196 7.196 28 F -0.180 7.180 29 H 0.276 0.724 30 H 0.402 0.598 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.213 0.787 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 1.706 -10.312 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.111 4.111 3 Si 0.696 3.304 4 H -0.192 1.192 5 H -0.179 1.179 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.112 0.888 9 C 0.101 3.899 10 H 0.108 0.892 11 N -0.360 5.360 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.202 4.202 15 C 0.005 3.995 16 N -0.178 5.178 17 C -0.023 4.023 18 N -0.220 5.220 19 C -0.075 4.075 20 C -0.087 4.087 21 C -0.150 4.150 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.062 4.062 25 C 0.383 3.617 26 F -0.174 7.174 27 F -0.178 7.178 28 F -0.162 7.162 29 H 0.087 0.913 30 H 0.238 0.762 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.230 0.770 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.101 1.643 -10.019 16.575 hybrid contribution -0.468 0.793 0.430 1.016 sum 12.633 2.435 -9.589 16.046 Atomic orbital electron populations 1.69853 1.06441 1.28491 1.44085 1.25012 0.94825 0.99337 0.91950 0.86897 0.80781 0.82851 0.79902 1.19198 1.17912 1.20427 1.20729 0.85817 0.96486 1.54634 0.88819 1.20025 0.96534 0.91524 0.81808 0.89236 1.47501 1.15134 1.60484 1.12923 1.20469 0.82440 0.78520 0.89578 1.90695 1.60491 1.45367 1.45903 1.22062 0.96852 1.04116 0.97181 1.21584 0.93952 1.04521 0.79432 1.45590 1.40398 1.19992 1.11861 1.25397 0.91706 0.93885 0.91308 1.70470 1.25743 1.15362 1.10405 1.19092 0.99635 0.94178 0.94638 1.19999 0.99410 0.94155 0.95091 1.20633 0.98701 0.96568 0.99131 1.20899 0.99511 0.99767 0.92251 1.20054 1.00655 0.93062 0.99039 1.18941 1.02987 0.94593 0.89632 1.21668 0.73865 0.86584 0.79593 1.93071 1.92484 1.52111 1.79733 1.93138 1.32371 1.96636 1.95644 1.93119 1.81980 1.96745 1.44311 0.91333 0.76184 0.88247 0.88422 0.88377 0.87514 0.77022 0.85562 0.85498 0.85333 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.84 13.96 55.43 0.77 -22.06 16 2 C 0.10 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 19.16 26.95 -169.99 -4.58 14.58 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.26 -5.52 6.94 56.52 0.39 -5.13 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.16 8.52 -34.44 -0.29 -13.45 16 8 H 0.09 2.49 8.01 -52.49 -0.42 2.07 16 9 C 0.20 4.41 1.54 -69.08 -0.11 4.31 16 10 H 0.09 2.06 5.06 -51.93 -0.26 1.80 16 11 N -0.71 -12.86 4.91 -54.93 -0.27 -13.13 16 12 C 0.51 8.42 7.48 -10.99 -0.08 8.34 16 13 O -0.55 -10.74 14.55 5.56 0.08 -10.66 16 14 C -0.16 -1.92 6.02 -27.88 -0.17 -2.09 16 15 C 0.13 1.41 5.45 -4.04 -0.02 1.39 16 16 N -0.49 -5.60 2.80 -115.80 -0.32 -5.93 16 17 C 0.26 2.86 12.49 -89.79 -1.12 1.74 16 18 N -0.50 -6.74 11.27 -12.05 -0.14 -6.87 16 19 C 0.04 0.57 7.23 -84.70 -0.61 -0.04 16 20 C -0.07 -0.75 10.05 -39.61 -0.40 -1.15 16 21 C -0.13 -1.23 9.96 -39.98 -0.40 -1.63 16 22 C -0.10 -1.02 10.03 -39.52 -0.40 -1.42 16 23 C -0.11 -1.22 10.05 -39.50 -0.40 -1.62 16 24 C 0.05 0.60 6.87 -83.99 -0.58 0.03 16 25 C 0.44 9.27 2.83 37.16 0.11 9.38 16 26 F -0.19 -3.92 16.93 2.25 0.04 -3.88 16 27 F -0.20 -4.06 15.84 2.25 0.04 -4.02 16 28 F -0.18 -3.96 16.89 2.25 0.04 -3.92 16 29 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.40 6.50 8.59 -40.82 -0.35 6.15 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.11 1.09 8.09 -51.92 -0.42 0.67 16 35 H 0.21 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -30.26 352.00 -7.58 -37.85 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.98 Total: 6.55 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -4.57 Total: 6.19 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.04 Total: -47.99 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 0.11 Total: -11.83 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.58 Total: 14.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.26 -7.58 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.160 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds