Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99680 * 2 1 4 4 H 1.48498 * 109.47042 * 90.02116 * 3 2 1 5 5 H 1.48500 * 109.46622 * 210.01988 * 3 2 1 6 6 H 1.48495 * 109.46894 * 330.01768 * 3 2 1 7 7 C 1.37877 * 120.00135 * 180.26853 * 2 1 3 8 8 H 1.07998 * 120.00286 * 4.08673 * 7 2 1 9 9 C 1.50697 * 119.99978 * 184.08280 * 7 2 1 10 10 H 1.08998 * 109.47150 * 24.72665 * 9 7 2 11 11 N 1.46504 * 109.47393 * 264.72776 * 9 7 2 12 12 C 1.34772 * 120.00030 * 154.99694 * 11 9 7 13 13 O 1.21282 * 120.00202 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99922 * 179.97438 * 12 11 9 15 15 C 1.52999 * 109.47424 * 179.97438 * 14 12 11 16 16 N 1.46496 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.36034 * 126.34800 * 264.69155 * 16 15 14 18 18 N 1.30111 * 110.10080 * 179.87865 * 17 16 15 19 19 C 1.35786 * 109.63837 * 0.38865 * 18 17 16 20 20 C 1.39745 * 133.60058 * 179.75923 * 19 18 17 21 21 C 1.36594 * 119.88745 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.67268 * 359.97438 * 21 20 19 23 23 C 1.37860 * 120.44908 * 0.04123 * 22 21 20 24 24 C 1.38047 * 126.34756 * 85.00255 * 16 15 14 25 25 C 1.52998 * 109.47382 * 144.72878 * 9 7 2 26 26 F 1.39901 * 109.47085 * 65.17407 * 25 9 7 27 27 F 1.39897 * 109.47610 * 185.17848 * 25 9 7 28 28 F 1.39904 * 109.46956 * 305.17818 * 25 9 7 29 29 H 0.97003 * 120.00068 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99755 * 335.00683 * 11 9 7 31 31 H 1.09001 * 109.47033 * 300.00529 * 14 12 11 32 32 H 1.09001 * 109.46912 * 60.00662 * 14 12 11 33 33 H 1.08994 * 109.46966 * 300.00690 * 15 14 12 34 34 H 1.09009 * 109.46646 * 60.00109 * 15 14 12 35 35 H 1.08006 * 124.95456 * 0.02562 * 17 16 15 36 36 H 1.08001 * 120.05578 * 359.97438 * 20 19 18 37 37 H 1.07998 * 119.66886 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.78117 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.15781 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4970 2.0463 1.4001 5 1 3.5464 1.4404 -0.7005 6 1 1.4462 2.6528 -0.6996 7 6 2.0045 -1.1940 -0.0056 8 1 1.4667 -2.1278 -0.0766 9 6 3.5086 -1.1961 0.0873 10 1 3.8437 -0.2812 0.5760 11 7 4.0811 -1.2682 -1.2593 12 6 5.3203 -0.7918 -1.4912 13 8 5.9618 -0.3038 -0.5849 14 6 5.9093 -0.8665 -2.8763 15 6 7.3144 -0.2612 -2.8664 16 7 7.8868 -0.3332 -4.2130 17 6 8.7069 -1.3084 -4.6893 18 7 9.0251 -1.0603 -5.9264 19 6 8.4369 0.0966 -6.3256 20 6 8.4420 0.8170 -7.5231 21 6 7.7324 1.9801 -7.6206 22 6 7.0029 2.4570 -6.5407 23 6 6.9835 1.7633 -5.3496 24 6 7.6986 0.5790 -5.2319 25 6 3.9677 -2.4070 0.9020 26 9 3.6411 -3.5816 0.2158 27 9 5.3528 -2.3457 1.0886 28 9 3.3287 -2.4011 2.1466 29 1 -0.4850 0.8401 -0.0004 30 1 3.5681 -1.6586 -1.9841 31 1 5.9643 -1.9083 -3.1921 32 1 5.2791 -0.3094 -3.5696 33 1 7.2590 0.7806 -2.5508 34 1 7.9449 -0.8178 -2.1729 35 1 9.0431 -2.1650 -4.1240 36 1 9.0067 0.4552 -8.3696 37 1 7.7392 2.5342 -8.5476 38 1 6.4467 3.3781 -6.6339 39 1 6.4145 2.1389 -4.5121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -142.057384 kcal Electronic energy + Delta-G solvation = -29490.576271 eV Core-core repulsion = 24789.814021 eV Total energy + Delta-G solvation = -4700.762250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.88138 -48.38849 -48.37444 -43.10518 -40.76798 -38.27391 -36.76142 -35.78091 -34.53159 -32.57286 -31.27097 -30.26120 -30.12521 -26.92532 -25.74560 -24.17598 -23.22805 -22.91790 -21.65361 -21.28939 -20.03527 -19.35661 -18.74061 -18.57186 -18.34199 -18.17404 -17.39826 -17.06118 -16.69681 -16.45625 -16.38876 -15.73475 -15.28461 -15.24283 -15.01343 -14.98455 -14.83588 -14.76951 -14.57818 -14.54770 -14.51509 -14.30587 -14.19673 -13.71058 -13.61823 -13.00683 -12.90170 -12.62503 -12.58592 -12.42538 -12.32023 -12.01061 -11.84472 -11.45499 -11.17989 -10.95316 -10.88712 -10.16477 -9.33135 -9.08071 -8.56366 -6.75738 0.02478 0.56873 1.24414 1.32402 1.39991 1.50876 1.52943 1.83621 2.04070 2.15437 2.21414 2.90212 2.93216 3.27605 3.33581 3.36377 3.48708 3.63027 3.67468 3.68682 3.95841 4.11705 4.21894 4.31350 4.34867 4.45882 4.51371 4.52890 4.72169 4.76123 4.87280 4.93065 5.24142 5.40812 5.47919 5.59354 5.59820 5.85221 5.96578 6.17516 6.42131 6.63874 6.88555 6.97724 7.21997 8.56206 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.003253 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.310955 B = 8605.058422 C = 9931.141818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.060 3.940 3 Si 0.925 3.075 4 H -0.270 1.270 5 H -0.249 1.249 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.213 3.787 10 H 0.080 0.920 11 N -0.710 5.710 12 C 0.506 3.494 13 O -0.573 6.573 14 C -0.146 4.146 15 C 0.134 3.866 16 N -0.489 5.489 17 C 0.266 3.734 18 N -0.534 5.534 19 C 0.014 3.986 20 C -0.084 4.084 21 C -0.124 4.124 22 C -0.103 4.103 23 C -0.123 4.123 24 C 0.028 3.972 25 C 0.440 3.560 26 F -0.187 7.187 27 F -0.191 7.191 28 F -0.187 7.187 29 H 0.280 0.720 30 H 0.414 0.586 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.249 0.751 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.705 2.439 -11.521 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.172 1.172 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.108 3.892 10 H 0.097 0.903 11 N -0.362 5.362 12 C 0.293 3.707 13 O -0.453 6.453 14 C -0.186 4.186 15 C 0.012 3.988 16 N -0.179 5.179 17 C -0.019 4.019 18 N -0.253 5.253 19 C -0.103 4.103 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.081 4.081 25 C 0.384 3.616 26 F -0.169 7.169 27 F -0.172 7.172 28 F -0.169 7.169 29 H 0.090 0.910 30 H 0.251 0.749 31 H 0.141 0.859 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.265 0.735 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.443 2.371 -11.262 18.468 hybrid contribution -0.824 0.507 0.776 1.240 sum 13.619 2.878 -10.486 17.427 Atomic orbital electron populations 1.69938 1.07854 1.29425 1.46267 1.25618 0.95277 1.02085 0.91701 0.86054 0.79874 0.79601 0.79678 1.19531 1.17239 1.19679 1.20678 0.87262 0.95288 1.54541 0.91819 1.19686 0.94946 0.91328 0.83265 0.90274 1.47065 1.16158 1.61242 1.11750 1.21106 0.81367 0.77026 0.91166 1.90690 1.60958 1.46265 1.47389 1.21964 0.97089 1.05910 0.93663 1.21497 0.93587 1.04171 0.79538 1.45578 1.40585 1.20038 1.11651 1.26119 0.90633 0.94246 0.90898 1.70448 1.27006 1.16069 1.11818 1.19496 1.00431 0.94712 0.95703 1.20299 1.00205 0.94872 0.95001 1.20999 0.97314 0.95876 1.00196 1.21286 0.99031 1.00294 0.91655 1.20288 1.01036 0.93081 0.99976 1.19206 1.03602 0.95350 0.89925 1.21590 0.74045 0.86686 0.79289 1.93079 1.92477 1.51761 1.79575 1.93147 1.31844 1.96630 1.95599 1.93105 1.82181 1.96789 1.44817 0.91028 0.74892 0.85880 0.87522 0.89199 0.86381 0.73536 0.84702 0.82554 0.82798 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.65 13.96 21.45 0.30 -48.35 16 2 C 0.06 2.99 5.47 84.66 0.46 3.46 16 3 Si 0.92 39.11 26.95 68.60 1.85 40.96 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.25 -10.13 6.94 99.48 0.69 -9.44 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -26.49 8.52 25.60 0.22 -26.27 16 8 H 0.06 3.46 8.01 -2.91 -0.02 3.44 16 9 C 0.21 9.03 1.54 44.24 0.07 9.09 16 10 H 0.08 3.56 5.06 -2.39 -0.01 3.55 16 11 N -0.71 -24.55 4.91 -446.10 -2.19 -26.74 16 12 C 0.51 15.72 7.48 87.66 0.66 16.38 16 13 O -0.57 -21.38 14.55 -3.04 -0.04 -21.42 16 14 C -0.15 -3.05 6.02 29.85 0.18 -2.87 16 15 C 0.13 2.66 5.45 86.38 0.47 3.13 16 16 N -0.49 -10.25 2.80 -520.27 -1.46 -11.70 16 17 C 0.27 5.28 12.49 180.06 2.25 7.53 16 18 N -0.53 -13.82 11.27 -192.02 -2.16 -15.98 16 19 C 0.01 0.36 7.23 39.45 0.29 0.65 16 20 C -0.08 -1.78 10.05 22.25 0.22 -1.56 16 21 C -0.12 -2.06 9.96 22.01 0.22 -1.84 16 22 C -0.10 -1.77 10.03 22.31 0.22 -1.54 16 23 C -0.12 -2.58 10.05 22.32 0.22 -2.36 16 24 C 0.03 0.67 6.87 38.86 0.27 0.94 16 25 C 0.44 18.22 2.83 71.98 0.20 18.43 16 26 F -0.19 -7.46 16.93 44.97 0.76 -6.70 16 27 F -0.19 -7.60 15.84 44.97 0.71 -6.89 16 28 F -0.19 -8.19 16.89 44.97 0.76 -7.43 16 29 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.41 12.65 8.59 -92.71 -0.80 11.85 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 34 H 0.12 2.08 8.09 -2.38 -0.02 2.06 16 35 H 0.25 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -65.50 352.00 4.78 -60.71 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.31 Total: 20.39 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 5.95 Total: 23.15 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -5.51 Total: -102.78 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.04 Total: -21.42 kcal Atomic # 9 Polarization: -23.25 SS G_CDS: 2.23 Total: -21.01 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.85 Total: 40.96 kcal Total: -65.50 4.78 -60.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.345 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds