Wall clock time and date at job start Sat Apr 11 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40069 * 126.05715 * 2 1 4 4 C 1.30851 * 108.38008 * 179.97438 * 3 2 1 5 5 C 1.40198 * 108.35678 * 0.02562 * 4 3 2 6 6 N 1.40940 * 126.08155 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00085 * 0.02562 * 6 5 4 8 8 O 1.21604 * 119.99903 * 5.65383 * 7 6 5 9 9 N 1.34779 * 119.99988 * 185.65913 * 7 6 5 10 10 C 1.46963 * 120.59343 * 185.63821 * 9 7 6 11 11 C 1.53364 * 108.63419 * 235.20515 * 10 9 7 12 12 N 1.46970 * 108.63491 * 310.57519 * 11 10 9 13 13 C 1.34780 * 120.59537 * 235.20063 * 12 11 10 14 14 O 1.21685 * 119.99678 * 355.09297 * 13 12 11 15 15 C 1.46369 * 120.00009 * 175.08341 * 13 12 11 16 16 H 1.08002 * 120.00070 * 33.76400 * 15 13 12 17 17 C 1.40041 * 120.00123 * 213.76537 * 15 13 12 18 18 N 1.30671 * 120.00399 * 175.36859 * 17 15 13 19 19 Si 1.86805 * 119.99910 * 355.36851 * 17 15 13 20 20 H 1.48498 * 109.46896 * 275.28897 * 19 17 15 21 21 H 1.48495 * 109.47200 * 35.28951 * 19 17 15 22 22 H 1.48505 * 109.47387 * 155.29248 * 19 17 15 23 23 C 1.46964 * 118.81025 * 55.48510 * 12 11 10 24 24 C 1.46965 * 120.59141 * 5.61629 * 9 7 6 25 25 C 1.35850 * 107.83474 * 0.25462 * 5 4 3 26 26 Cl 1.73600 * 126.22589 * 179.73799 * 25 5 4 27 27 H 1.08996 * 109.47787 * 90.02454 * 1 2 3 28 28 H 1.09000 * 109.47054 * 210.02322 * 1 2 3 29 29 H 1.08999 * 109.47470 * 330.01992 * 1 2 3 30 30 H 1.08009 * 125.81883 * 180.02562 * 4 3 2 31 31 H 0.96995 * 119.99895 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.60409 * 115.46173 * 10 9 7 33 33 H 1.08996 * 109.60677 * 354.94936 * 10 9 7 34 34 H 1.09003 * 109.61046 * 190.83123 * 11 10 9 35 35 H 1.09000 * 109.75406 * 70.40373 * 11 10 9 36 36 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.61217 * 64.26173 * 23 12 11 38 38 H 1.09001 * 109.60795 * 184.77878 * 23 12 11 39 39 H 1.09002 * 109.61207 * 244.54011 * 24 9 7 40 40 H 1.09006 * 109.61205 * 4.88431 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2894 1.1324 0.0000 4 6 3.5362 0.7350 0.0006 5 6 3.5528 -0.6668 0.0003 6 7 4.7016 -1.4833 0.0013 7 6 5.9271 -0.9223 0.0031 8 8 6.0436 0.2836 0.1076 9 7 7.0235 -1.6979 -0.1111 10 6 8.3674 -1.1162 0.0127 11 6 9.1715 -1.4682 -1.2449 12 7 9.0444 -2.9109 -1.4950 13 6 10.1408 -3.6865 -1.6093 14 8 11.2477 -3.1812 -1.5948 15 6 10.0000 -5.1365 -1.7506 16 1 9.1574 -5.5475 -2.2869 17 6 10.9578 -5.9909 -1.1904 18 7 10.7860 -7.2854 -1.2376 19 14 12.4811 -5.2801 -0.3757 20 1 13.5169 -5.0174 -1.4068 21 1 12.1296 -4.0095 0.3079 22 1 13.0077 -6.2483 0.6195 23 6 7.7006 -3.4916 -1.6245 24 6 6.8963 -3.1405 -0.3612 25 6 2.2646 -1.0982 -0.0061 26 17 1.7365 -2.7519 -0.0155 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 4.4044 1.3776 0.0011 31 1 4.6103 -2.4490 0.0007 32 1 8.8642 -1.5271 0.8915 33 1 8.2899 -0.0330 0.1060 34 1 10.2204 -1.2145 -1.0914 35 1 8.7821 -0.9133 -2.0985 36 1 11.4492 -7.8772 -0.8493 37 1 7.2062 -3.0774 -2.5031 38 1 7.7779 -4.5745 -1.7215 39 1 7.2885 -3.6955 0.4910 40 1 5.8471 -3.3947 -0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932394649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:50 Heat of formation + Delta-G solvation = 34.814703 kcal Electronic energy + Delta-G solvation = -27364.359347 eV Core-core repulsion = 23242.983488 eV Total energy + Delta-G solvation = -4121.375859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69696 -40.28518 -38.48362 -37.24357 -36.35817 -35.12906 -33.51475 -32.90364 -32.85404 -31.16117 -29.53448 -27.75746 -26.83275 -25.99713 -23.52331 -22.83346 -21.86978 -21.37622 -20.15374 -19.05757 -18.24042 -17.71451 -16.62960 -16.50749 -16.20913 -15.91238 -15.43241 -15.23928 -14.82645 -14.68056 -14.50632 -14.08753 -13.94670 -13.76236 -13.64118 -13.16934 -13.09568 -12.66779 -12.34269 -12.33146 -12.25565 -12.01732 -11.85254 -11.23814 -11.15715 -11.07046 -11.04403 -10.98564 -10.84426 -10.42181 -10.07902 -9.72505 -9.59414 -9.04781 -8.88140 -8.10953 -7.97733 -7.56678 -6.65774 -4.85047 1.10483 1.24277 2.13429 2.34427 2.56861 3.22522 3.37139 3.40554 3.62650 3.68375 4.06689 4.10418 4.20437 4.40685 4.65558 4.76591 4.96142 5.01798 5.03847 5.15410 5.17476 5.23296 5.34040 5.49082 5.67708 5.71440 5.86914 5.96319 6.14180 6.19842 6.31608 6.34972 6.48324 6.54036 6.78157 6.96504 7.24783 7.49552 7.73632 7.80079 8.24532 8.41073 8.63493 9.01843 9.86990 10.36539 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002683 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.642417 B =10433.008560 C =11403.345140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.368 5.368 3 N -0.262 5.262 4 C 0.063 3.937 5 C 0.061 3.939 6 N -0.660 5.660 7 C 0.714 3.286 8 O -0.582 6.582 9 N -0.617 5.617 10 C 0.117 3.883 11 C 0.103 3.897 12 N -0.631 5.631 13 C 0.564 3.436 14 O -0.606 6.606 15 C -0.540 4.540 16 H 0.092 0.908 17 C 0.104 3.896 18 N -0.836 5.836 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.259 1.259 22 H -0.314 1.314 23 C 0.109 3.891 24 C 0.093 3.907 25 C 0.069 3.931 26 Cl -0.003 7.003 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.217 0.783 31 H 0.408 0.592 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.281 0.719 37 H 0.052 0.948 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.275 8.883 4.103 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.157 5.157 3 N -0.085 5.085 4 C -0.124 4.124 5 C -0.046 4.046 6 N -0.310 5.310 7 C 0.416 3.584 8 O -0.460 6.460 9 N -0.353 5.353 10 C -0.006 4.006 11 C -0.022 4.022 12 N -0.366 5.366 13 C 0.371 3.629 14 O -0.495 6.495 15 C -0.576 4.576 16 H 0.110 0.890 17 C -0.113 4.113 18 N -0.467 5.467 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.184 1.184 22 H -0.244 1.244 23 C -0.016 4.016 24 C -0.031 4.031 25 C -0.085 4.085 26 Cl 0.025 6.975 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.233 0.767 31 H 0.247 0.753 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.480 10.614 4.181 24.321 hybrid contribution 0.792 -1.454 0.242 1.673 sum -20.688 9.160 4.423 23.053 Atomic orbital electron populations 1.21901 0.73215 1.04836 1.03789 1.48296 1.06612 1.01743 1.59023 1.77576 1.01305 1.06098 1.23497 1.24487 0.95587 0.92793 0.99530 1.16911 0.84017 0.91233 1.12489 1.42139 1.02366 1.09194 1.77294 1.15602 0.79794 0.85062 0.77894 1.90769 1.84942 1.12314 1.58006 1.47255 1.05112 1.08506 1.74419 1.22014 0.79847 0.99886 0.98852 1.21674 1.01410 0.83515 0.95577 1.47880 1.05941 1.06573 1.76182 1.18503 0.81722 0.87961 0.74705 1.90353 1.25579 1.75365 1.58181 1.20609 1.11577 0.87438 1.38001 0.89037 1.25579 0.98328 0.94207 0.93163 1.69513 1.35191 1.03655 1.38297 0.85671 0.80715 0.77535 0.78558 1.20076 1.18379 1.24412 1.21917 0.83268 1.01822 0.94579 1.22319 1.00101 0.80192 1.00466 1.20734 0.90010 0.83386 1.14410 1.98404 1.90665 1.11132 1.97298 0.90357 0.89415 0.88644 0.76683 0.75344 0.91080 0.88250 0.88334 0.92799 0.90843 0.92949 0.86735 0.89994 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.32 59.85 0.68 1.26 16 2 N -0.37 -3.75 4.04 -64.60 -0.26 -4.01 16 3 N -0.26 -3.26 12.56 30.70 0.39 -2.88 16 4 C 0.06 0.82 10.84 -17.23 -0.19 0.64 16 5 C 0.06 0.75 6.89 -83.78 -0.58 0.17 16 6 N -0.66 -7.87 5.34 -14.35 -0.08 -7.94 16 7 C 0.71 10.16 8.26 -86.91 -0.72 9.44 16 8 O -0.58 -9.49 12.94 5.27 0.07 -9.42 16 9 N -0.62 -8.64 2.95 -177.94 -0.52 -9.17 16 10 C 0.12 1.75 6.60 -3.60 -0.02 1.73 16 11 C 0.10 1.78 6.58 -3.60 -0.02 1.75 16 12 N -0.63 -12.56 2.94 -173.87 -0.51 -13.07 16 13 C 0.56 14.08 7.01 -12.99 -0.09 13.99 16 14 O -0.61 -16.72 12.35 5.20 0.06 -16.65 16 15 C -0.54 -14.22 8.93 -35.64 -0.32 -14.54 16 16 H 0.09 2.39 6.65 -52.49 -0.35 2.04 16 17 C 0.10 2.81 5.52 -17.37 -0.10 2.72 16 18 N -0.84 -22.73 13.92 55.55 0.77 -21.95 16 19 Si 0.94 23.84 26.20 -169.99 -4.45 19.38 16 20 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.26 -6.80 6.49 56.52 0.37 -6.43 16 22 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 23 C 0.11 1.74 6.53 -3.36 -0.02 1.72 16 24 C 0.09 1.20 6.53 -3.36 -0.02 1.18 16 25 C 0.07 0.73 7.51 -16.63 -0.12 0.60 16 26 Cl 0.00 -0.02 28.57 -51.86 -1.48 -1.50 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.35 7.85 -51.93 -0.41 -0.05 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.22 2.95 5.94 -52.48 -0.31 2.64 16 31 H 0.41 4.06 6.16 -40.82 -0.25 3.80 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.42 6.99 -51.93 -0.36 1.06 16 34 H 0.10 1.84 7.02 -51.93 -0.36 1.48 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.28 7.09 8.29 -40.82 -0.34 6.76 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.11 1.96 5.59 -51.93 -0.29 1.67 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.74 5.72 -51.93 -0.30 0.44 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -33.09 344.09 -6.70 -39.78 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.34 Total: 1.57 kcal Atomic # 6 Polarization: 22.19 SS G_CDS: -1.53 Total: 20.67 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.21 Total: -59.02 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: 0.13 Total: -26.07 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.45 Total: 19.38 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.48 Total: -1.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.09 -6.70 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932394649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.598 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds