Wall clock time and date at job start Sat Apr 11 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40069 * 126.05715 * 2 1 4 4 C 1.30851 * 108.38008 * 179.97438 * 3 2 1 5 5 C 1.40198 * 108.35678 * 0.02562 * 4 3 2 6 6 N 1.40940 * 126.08155 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00085 * 0.02562 * 6 5 4 8 8 O 1.21604 * 119.99903 * 5.65383 * 7 6 5 9 9 N 1.34779 * 119.99988 * 185.65913 * 7 6 5 10 10 C 1.46963 * 120.59343 * 185.63821 * 9 7 6 11 11 C 1.53364 * 108.63419 * 235.20515 * 10 9 7 12 12 N 1.46970 * 108.63491 * 310.57519 * 11 10 9 13 13 C 1.34780 * 120.59537 * 235.20063 * 12 11 10 14 14 O 1.21685 * 119.99678 * 355.09297 * 13 12 11 15 15 C 1.46369 * 120.00009 * 175.08341 * 13 12 11 16 16 H 1.08002 * 120.00070 * 33.76400 * 15 13 12 17 17 C 1.40041 * 120.00123 * 213.76537 * 15 13 12 18 18 N 1.30671 * 120.00399 * 175.36859 * 17 15 13 19 19 Si 1.86805 * 119.99910 * 355.36851 * 17 15 13 20 20 H 1.48498 * 109.46896 * 275.28897 * 19 17 15 21 21 H 1.48495 * 109.47200 * 35.28951 * 19 17 15 22 22 H 1.48505 * 109.47387 * 155.29248 * 19 17 15 23 23 C 1.46964 * 118.81025 * 55.48510 * 12 11 10 24 24 C 1.46965 * 120.59141 * 5.61629 * 9 7 6 25 25 C 1.35850 * 107.83474 * 0.25462 * 5 4 3 26 26 Cl 1.73600 * 126.22589 * 179.73799 * 25 5 4 27 27 H 1.08996 * 109.47787 * 90.02454 * 1 2 3 28 28 H 1.09000 * 109.47054 * 210.02322 * 1 2 3 29 29 H 1.08999 * 109.47470 * 330.01992 * 1 2 3 30 30 H 1.08009 * 125.81883 * 180.02562 * 4 3 2 31 31 H 0.96995 * 119.99895 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.60409 * 115.46173 * 10 9 7 33 33 H 1.08996 * 109.60677 * 354.94936 * 10 9 7 34 34 H 1.09003 * 109.61046 * 190.83123 * 11 10 9 35 35 H 1.09000 * 109.75406 * 70.40373 * 11 10 9 36 36 H 0.97000 * 120.00362 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.61217 * 64.26173 * 23 12 11 38 38 H 1.09001 * 109.60795 * 184.77878 * 23 12 11 39 39 H 1.09002 * 109.61207 * 244.54011 * 24 9 7 40 40 H 1.09006 * 109.61205 * 4.88431 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2894 1.1324 0.0000 4 6 3.5362 0.7350 0.0006 5 6 3.5528 -0.6668 0.0003 6 7 4.7016 -1.4833 0.0013 7 6 5.9271 -0.9223 0.0031 8 8 6.0436 0.2836 0.1076 9 7 7.0235 -1.6979 -0.1111 10 6 8.3674 -1.1162 0.0127 11 6 9.1715 -1.4682 -1.2449 12 7 9.0444 -2.9109 -1.4950 13 6 10.1408 -3.6865 -1.6093 14 8 11.2477 -3.1812 -1.5948 15 6 10.0000 -5.1365 -1.7506 16 1 9.1574 -5.5475 -2.2869 17 6 10.9578 -5.9909 -1.1904 18 7 10.7860 -7.2854 -1.2376 19 14 12.4811 -5.2801 -0.3757 20 1 13.5169 -5.0174 -1.4068 21 1 12.1296 -4.0095 0.3079 22 1 13.0077 -6.2483 0.6195 23 6 7.7006 -3.4916 -1.6245 24 6 6.8963 -3.1405 -0.3612 25 6 2.2646 -1.0982 -0.0061 26 17 1.7365 -2.7519 -0.0155 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 4.4044 1.3776 0.0011 31 1 4.6103 -2.4490 0.0007 32 1 8.8642 -1.5271 0.8915 33 1 8.2899 -0.0330 0.1060 34 1 10.2204 -1.2145 -1.0914 35 1 8.7821 -0.9133 -2.0985 36 1 11.4492 -7.8772 -0.8493 37 1 7.2062 -3.0774 -2.5031 38 1 7.7779 -4.5745 -1.7215 39 1 7.2885 -3.6955 0.4910 40 1 5.8471 -3.3947 -0.5118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932394649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:50 Heat of formation + Delta-G solvation = 11.429894 kcal Electronic energy + Delta-G solvation = -27365.373388 eV Core-core repulsion = 23242.983488 eV Total energy + Delta-G solvation = -4122.389900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.58832 -41.41682 -40.09874 -37.98389 -37.86270 -36.13222 -34.95182 -34.85073 -33.77139 -32.43201 -30.44447 -29.31999 -28.07687 -27.15913 -24.82607 -24.07577 -22.88475 -22.39371 -21.48623 -20.36184 -19.45703 -18.82697 -18.29050 -17.66164 -17.45034 -17.07587 -16.78149 -16.46808 -16.09366 -16.00429 -15.73867 -15.61217 -15.07390 -14.81313 -14.61380 -14.54234 -14.15588 -13.95635 -13.84328 -13.59972 -13.34918 -13.06731 -13.00876 -12.74741 -12.65159 -12.46557 -12.32991 -12.27193 -11.93275 -11.89092 -11.68270 -11.22316 -11.11388 -10.39108 -10.17481 -10.08371 -9.21836 -8.79278 -8.72180 -6.90544 0.31851 0.40702 1.23006 1.34691 1.37029 1.37995 1.60210 1.70726 2.09063 2.19058 2.30346 2.56237 2.73477 3.23332 3.49080 3.86403 3.91028 3.92703 4.04118 4.18247 4.26165 4.39002 4.42957 4.48402 4.49914 4.66225 4.69712 4.77272 4.88920 4.97795 5.03399 5.13353 5.34677 5.57917 5.62713 5.72887 5.75193 5.95851 6.25560 6.36871 6.67234 6.72978 7.10365 7.33947 7.93739 8.34014 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.002683 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.642417 B =10433.008560 C =11403.345140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.361 5.361 3 N -0.279 5.279 4 C 0.048 3.952 5 C 0.036 3.964 6 N -0.647 5.647 7 C 0.714 3.286 8 O -0.605 6.605 9 N -0.617 5.617 10 C 0.128 3.872 11 C 0.105 3.895 12 N -0.629 5.629 13 C 0.562 3.438 14 O -0.638 6.638 15 C -0.550 4.550 16 H 0.088 0.912 17 C 0.074 3.926 18 N -0.857 5.857 19 Si 0.985 3.015 20 H -0.290 1.290 21 H -0.277 1.277 22 H -0.294 1.294 23 C 0.105 3.895 24 C 0.101 3.899 25 C 0.080 3.920 26 Cl 0.023 6.977 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.204 0.796 31 H 0.418 0.582 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.289 0.711 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.807 8.699 4.571 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.150 5.150 3 N -0.104 5.104 4 C -0.138 4.138 5 C -0.071 4.071 6 N -0.298 5.298 7 C 0.416 3.584 8 O -0.484 6.484 9 N -0.353 5.353 10 C 0.004 3.996 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.367 3.633 14 O -0.530 6.530 15 C -0.587 4.587 16 H 0.106 0.894 17 C -0.140 4.140 18 N -0.489 5.489 19 Si 0.815 3.185 20 H -0.217 1.217 21 H -0.203 1.203 22 H -0.223 1.223 23 C -0.019 4.019 24 C -0.022 4.022 25 C -0.076 4.076 26 Cl 0.051 6.949 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.220 0.780 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.095 10.415 4.660 26.660 hybrid contribution 1.378 -1.365 0.042 1.939 sum -22.717 9.050 4.702 24.901 Atomic orbital electron populations 1.22337 0.70682 1.06465 1.05408 1.48724 1.07962 1.01068 1.57197 1.77524 1.01404 1.07226 1.24213 1.24319 0.95620 0.93331 1.00547 1.17003 0.84650 0.91027 1.14463 1.41903 1.01589 1.09567 1.76756 1.15641 0.80260 0.84710 0.77746 1.90769 1.85335 1.13406 1.58930 1.47199 1.04715 1.08831 1.74569 1.21813 0.80098 1.00417 0.97257 1.21764 1.01058 0.81848 0.97268 1.47803 1.06351 1.07483 1.74601 1.18414 0.82411 0.88022 0.74486 1.90327 1.27229 1.75941 1.59500 1.20783 1.11461 0.88405 1.38040 0.89381 1.25995 0.99625 0.94556 0.93847 1.69519 1.36083 1.03972 1.39308 0.85099 0.78921 0.76638 0.77814 1.21720 1.20298 1.22312 1.22111 0.81663 1.01093 0.97015 1.22297 1.01781 0.79492 0.98660 1.20860 0.89616 0.84613 1.12484 1.98419 1.90369 1.09038 1.97098 0.88698 0.87414 0.87492 0.78001 0.74207 0.91294 0.87447 0.90091 0.91651 0.90050 0.91255 0.87895 0.90137 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.32 127.77 1.45 2.20 16 2 N -0.36 -6.55 4.04 -358.28 -1.45 -7.99 16 3 N -0.28 -6.67 12.56 -56.79 -0.71 -7.38 16 4 C 0.05 1.22 10.84 85.32 0.92 2.15 16 5 C 0.04 0.82 6.89 37.60 0.26 1.07 16 6 N -0.65 -14.04 5.34 -317.56 -1.70 -15.73 16 7 C 0.71 19.13 8.26 179.05 1.48 20.61 16 8 O -0.60 -19.24 12.94 -4.04 -0.05 -19.29 16 9 N -0.62 -16.14 2.95 -835.12 -2.46 -18.60 16 10 C 0.13 3.68 6.60 86.41 0.57 4.25 16 11 C 0.10 3.55 6.58 86.41 0.57 4.12 16 12 N -0.63 -24.64 2.94 -822.23 -2.42 -27.06 16 13 C 0.56 28.10 7.01 86.36 0.61 28.70 16 14 O -0.64 -35.62 12.35 -4.30 -0.05 -35.68 16 15 C -0.55 -29.06 8.93 24.83 0.22 -28.84 16 16 H 0.09 4.62 6.65 -2.91 -0.02 4.60 16 17 C 0.07 4.01 5.52 85.30 0.47 4.48 16 18 N -0.86 -46.33 13.92 21.83 0.30 -46.03 16 19 Si 0.98 49.25 26.20 68.60 1.80 51.05 16 20 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.28 -14.59 6.49 99.48 0.65 -13.94 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 C 0.10 3.18 6.53 86.57 0.57 3.75 16 24 C 0.10 2.37 6.53 86.57 0.57 2.94 16 25 C 0.08 1.50 7.51 83.52 0.63 2.13 16 26 Cl 0.02 0.30 28.57 -2.72 -0.08 0.22 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.11 0.49 7.85 -2.39 -0.02 0.47 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.20 5.64 5.94 -2.91 -0.02 5.62 16 31 H 0.42 7.02 6.16 -92.71 -0.57 6.45 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 2.96 6.99 -2.39 -0.02 2.94 16 34 H 0.08 3.05 7.02 -2.39 -0.02 3.04 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.29 14.41 8.29 -92.71 -0.77 13.65 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 3.42 5.59 -2.39 -0.01 3.40 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 1.80 5.72 -2.38 -0.01 1.79 16 Total: -1.00 -71.08 344.09 1.97 -69.11 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.49 Total: 9.83 kcal Atomic # 6 Polarization: 39.25 SS G_CDS: 8.30 Total: 47.56 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -8.43 Total: -122.80 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.11 Total: -54.97 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.80 Total: 51.05 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.08 Total: 0.22 kcal Total: -71.08 1.97 -69.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932394649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds