Wall clock time and date at job start Sat Apr 11 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39630 * 120.15045 * 238.48037 * 3 2 1 5 5 C 1.37946 * 119.84485 * 180.02562 * 4 3 2 6 6 C 1.38359 * 120.15259 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.84781 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46947 * 89.99696 * 7 6 5 9 9 N 1.46498 * 109.46858 * 180.02562 * 8 7 6 10 10 C 1.34784 * 119.99748 * 180.02562 * 9 8 7 11 11 O 1.21578 * 119.99926 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99626 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99741 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47175 * 35.00237 * 13 12 10 15 15 C 1.50697 * 109.46896 * 155.00439 * 13 12 10 16 16 H 1.07994 * 120.00496 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99687 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00216 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47195 * 90.00222 * 19 17 15 21 21 H 1.48504 * 109.47636 * 210.00509 * 19 17 15 22 22 H 1.48508 * 109.47108 * 330.00152 * 19 17 15 23 23 C 1.53006 * 109.46998 * 275.00368 * 13 12 10 24 24 F 1.39897 * 109.47129 * 60.00160 * 23 13 12 25 25 F 1.39900 * 109.46764 * 180.02562 * 23 13 12 26 26 F 1.39895 * 109.46931 * 299.99881 * 23 13 12 27 27 C 1.38358 * 120.30555 * 0.23365 * 6 5 4 28 28 C 1.37948 * 120.15212 * 359.48968 * 27 6 5 29 29 H 1.08004 * 120.07448 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.92375 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.46578 * 330.00404 * 7 6 5 32 32 H 1.08997 * 109.46907 * 209.99983 * 7 6 5 33 33 H 1.09009 * 109.46897 * 60.00462 * 8 7 6 34 34 H 1.09002 * 109.47574 * 300.00391 * 8 7 6 35 35 H 0.96995 * 120.00367 * 359.97438 * 9 8 7 36 36 H 0.96997 * 120.00149 * 0.02562 * 12 10 9 37 37 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 38 38 H 1.07995 * 119.92681 * 179.72584 * 27 6 5 39 39 H 1.07998 * 120.08506 * 180.25673 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2691 0.6322 1.0293 5 6 4.6486 0.6294 1.0227 6 6 5.3374 0.0032 -0.0009 7 6 6.8445 0.0049 -0.0015 8 6 7.3561 -1.2245 0.7519 9 7 8.8211 -1.2226 0.7519 10 6 9.4963 -2.2174 1.3611 11 8 8.8896 -3.1160 1.9110 12 7 10.8441 -2.2158 1.3605 13 6 11.5781 -3.2968 2.0232 14 1 11.0317 -4.2325 1.9051 15 6 12.9443 -3.4308 1.4016 16 1 13.2366 -2.7767 0.5936 17 6 13.8213 -4.3888 1.8646 18 7 13.4652 -5.1858 2.8484 19 14 15.5146 -4.5555 1.0938 20 1 16.4753 -3.6832 1.8159 21 1 15.9633 -5.9682 1.1852 22 1 15.4514 -4.1477 -0.3328 23 6 11.7243 -2.9759 3.5121 24 9 10.4560 -2.8514 4.0890 25 9 12.4257 -4.0079 4.1447 26 9 12.4255 -1.7749 3.6635 27 6 4.6491 -0.6198 -1.0267 28 6 3.2697 -0.6296 -1.0297 29 1 2.7326 1.1224 1.8282 30 1 5.1921 1.1178 1.8180 31 1 7.2069 0.9084 0.4889 32 1 7.2074 -0.0215 -1.0289 33 1 6.9936 -2.1281 0.2616 34 1 6.9931 -1.1982 1.7794 35 1 9.3051 -0.5059 0.3128 36 1 11.3281 -1.4987 0.9221 37 1 14.0823 -5.8594 3.1744 38 1 5.1930 -1.1029 -1.8249 39 1 2.7335 -1.1199 -1.8288 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:55 Heat of formation + Delta-G solvation = -138.521163 kcal Electronic energy + Delta-G solvation = -28489.245364 eV Core-core repulsion = 23788.636457 eV Total energy + Delta-G solvation = -4700.608908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.35495 -47.98833 -47.67029 -40.93781 -40.41349 -37.75713 -36.79423 -36.01861 -34.47068 -33.60704 -31.97446 -30.63613 -29.13816 -26.54149 -25.26946 -23.67228 -23.41329 -22.47293 -21.79828 -19.95009 -19.85940 -18.81744 -18.72164 -18.50825 -17.79329 -17.02221 -16.80853 -16.62972 -16.16653 -15.99946 -15.44788 -15.37520 -15.05300 -15.04236 -14.90529 -14.74220 -14.46655 -14.39611 -14.32123 -14.24069 -13.97405 -13.90853 -13.86098 -13.81115 -13.53888 -12.99838 -12.71632 -12.63735 -12.55915 -12.34591 -12.32455 -12.16527 -11.80954 -11.51900 -11.21546 -10.65348 -10.24508 -9.90960 -9.70045 -9.68787 -8.17027 -6.47465 -0.21012 0.47017 1.49975 1.50871 1.59285 1.61704 1.77338 1.96735 2.21777 2.40716 2.62499 2.87347 2.91914 2.98950 3.39155 3.84629 3.91399 3.93169 3.98590 4.03450 4.16428 4.26626 4.29493 4.46226 4.58753 4.69675 4.87288 4.94043 4.99714 5.17029 5.20007 5.30634 5.39545 5.49628 5.57956 5.62847 5.67155 5.70316 5.92640 6.22913 6.42315 6.58124 7.21776 7.29435 7.74296 8.75576 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002038 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.732898 B =13734.706337 C =14158.666275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.280 3.720 3 C -0.051 4.051 4 C -0.068 4.068 5 C -0.118 4.118 6 C -0.050 4.050 7 C -0.084 4.084 8 C 0.144 3.856 9 N -0.729 5.729 10 C 0.693 3.307 11 O -0.632 6.632 12 N -0.720 5.720 13 C 0.271 3.729 14 H 0.045 0.955 15 C -0.558 4.558 16 H 0.094 0.906 17 C 0.013 3.987 18 N -0.876 5.876 19 Si 0.983 3.017 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.255 1.255 23 C 0.412 3.588 24 F -0.219 7.219 25 F -0.152 7.152 26 F -0.203 7.203 27 C -0.116 4.116 28 C -0.068 4.068 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.414 0.586 36 H 0.411 0.589 37 H 0.267 0.733 38 H 0.153 0.847 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 14.003 -9.086 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.035 4.035 3 C -0.055 4.055 4 C -0.089 4.089 5 C -0.136 4.136 6 C -0.051 4.051 7 C -0.121 4.121 8 C 0.020 3.980 9 N -0.387 5.387 10 C 0.393 3.607 11 O -0.513 6.513 12 N -0.375 5.375 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.595 4.595 16 H 0.112 0.888 17 C -0.193 4.193 18 N -0.510 5.510 19 Si 0.807 3.193 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.179 1.179 23 C 0.355 3.645 24 F -0.201 7.201 25 F -0.134 7.134 26 F -0.185 7.185 27 C -0.134 4.134 28 C -0.088 4.088 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.251 0.749 36 H 0.247 0.753 37 H 0.077 0.923 38 H 0.170 0.830 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.924 13.035 -8.445 20.205 hybrid contribution 1.372 0.125 0.190 1.390 sum -11.552 13.160 -8.255 19.359 Atomic orbital electron populations 1.81282 1.13583 1.10483 1.09514 1.26067 0.92966 0.92176 0.92246 1.16143 0.83097 1.06263 0.99959 1.21352 0.94587 0.96364 0.96557 1.21278 0.93414 0.99901 0.98958 1.20088 0.95577 0.95330 0.94152 1.20814 0.90542 0.97674 1.03084 1.21178 0.77529 0.98865 1.00451 1.44866 1.07372 1.26448 1.60028 1.16297 0.82007 0.82922 0.79519 1.90895 1.68722 1.39727 1.51906 1.44974 1.04191 1.28775 1.59522 1.19149 0.94356 0.87361 0.82900 0.93743 1.21226 0.97110 1.20185 1.20948 0.88779 1.26015 1.03570 0.94890 0.94785 1.70545 1.37543 1.18566 1.24314 0.85157 0.77580 0.77266 0.79283 1.20070 1.21083 1.17882 1.23382 0.72032 0.74000 0.95038 1.93061 1.43126 1.96014 1.87906 1.93373 1.78068 1.57184 1.84735 1.92979 1.80027 1.48585 1.96926 1.21285 0.93386 0.99262 0.99467 1.21365 0.94604 0.96149 0.96687 0.83772 0.83196 0.87947 0.87692 0.92650 0.93048 0.74942 0.75252 0.92266 0.82972 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.10 18.54 19.01 0.35 -10.75 16 2 C 0.28 5.01 15.33 88.33 1.35 6.37 16 3 C -0.05 -0.66 5.73 -21.36 -0.12 -0.79 16 4 C -0.07 -0.73 9.76 22.54 0.22 -0.51 16 5 C -0.12 -1.15 9.68 22.23 0.22 -0.93 16 6 C -0.05 -0.50 5.14 -19.81 -0.10 -0.60 16 7 C -0.08 -0.76 5.45 29.85 0.16 -0.59 16 8 C 0.14 2.76 5.66 86.38 0.49 3.25 16 9 N -0.73 -17.01 5.56 -478.52 -2.66 -19.67 16 10 C 0.69 25.67 8.10 179.05 1.45 27.12 16 11 O -0.63 -29.90 14.92 -3.96 -0.06 -29.96 16 12 N -0.72 -27.50 4.99 -461.40 -2.30 -29.80 16 13 C 0.27 13.25 2.21 44.25 0.10 13.35 16 14 H 0.04 2.55 7.58 -2.39 -0.02 2.53 16 15 C -0.56 -27.28 8.46 25.60 0.22 -27.06 16 16 H 0.09 4.17 7.74 -2.91 -0.02 4.15 16 17 C 0.01 0.63 5.20 84.65 0.44 1.07 16 18 N -0.88 -48.00 9.50 21.45 0.20 -47.80 16 19 Si 0.98 39.53 29.54 68.60 2.03 41.56 16 20 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.29 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 23 C 0.41 21.05 2.81 71.98 0.20 21.25 16 24 F -0.22 -11.25 15.68 44.97 0.70 -10.54 16 25 F -0.15 -8.53 12.91 44.97 0.58 -7.95 16 26 F -0.20 -9.72 16.94 44.97 0.76 -8.95 16 27 C -0.12 -1.09 9.68 22.23 0.22 -0.87 16 28 C -0.07 -0.71 9.76 22.54 0.22 -0.49 16 29 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 30 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 31 H 0.10 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.10 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.41 6.33 8.49 -92.71 -0.79 5.55 16 36 H 0.41 12.62 8.55 -92.71 -0.79 11.82 16 37 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 39 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -72.56 358.19 4.22 -68.34 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -0.44 Total: 14.98 kcal Atomic # 6 Polarization: 35.49 SS G_CDS: 5.06 Total: 40.55 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.41 Total: -108.02 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.06 Total: -29.96 kcal Atomic # 9 Polarization: -29.50 SS G_CDS: 2.05 Total: -27.45 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -72.56 4.22 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.184 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds