Wall clock time and date at job start Sat Apr 11 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.50698 * 109.47254 * 200.56779 * 3 2 1 5 5 C 1.38240 * 120.00050 * 89.99754 * 4 3 2 6 6 C 1.38227 * 120.00313 * 180.02562 * 5 4 3 7 7 C 1.38244 * 120.00045 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00109 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47141 * 89.99925 * 8 7 6 10 10 C 1.34779 * 119.99956 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99988 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99711 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10 15 15 C 1.50694 * 109.47115 * 204.99781 * 13 12 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.53000 * 109.47145 * 84.99707 * 13 12 10 24 24 F 1.39903 * 109.47440 * 180.02562 * 23 13 12 25 25 F 1.39899 * 109.47255 * 300.00046 * 23 13 12 26 26 F 1.39900 * 109.47102 * 59.99912 * 23 13 12 27 27 C 1.38229 * 119.99686 * 0.25425 * 7 6 5 28 28 C 1.38228 * 120.00351 * 270.02848 * 4 3 2 29 29 H 1.08999 * 109.47241 * 80.57321 * 3 2 1 30 30 H 1.09000 * 109.47660 * 320.57306 * 3 2 1 31 31 H 1.08000 * 119.99694 * 0.02562 * 5 4 3 32 32 H 1.08005 * 120.00345 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47247 * 330.00457 * 8 7 6 34 34 H 1.08993 * 109.47610 * 209.99905 * 8 7 6 35 35 H 0.97001 * 119.99730 * 0.02562 * 9 8 7 36 36 H 0.97005 * 120.00104 * 359.97438 * 12 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.00218 * 179.72879 * 27 7 6 39 39 H 1.07999 * 120.00163 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1097 1.3311 0.4991 5 6 3.3400 1.5208 1.8490 6 6 3.7997 2.7412 2.3069 7 6 4.0287 3.7725 1.4151 8 6 4.5294 5.1032 1.9144 9 7 5.9944 5.1051 1.9143 10 6 6.6669 6.1989 2.3241 11 8 6.0578 7.1839 2.6942 12 7 8.0147 6.2007 2.3235 13 6 8.7458 7.3894 2.7693 14 1 8.1970 8.2845 2.4764 15 6 10.1118 7.4069 2.1332 16 1 10.4062 6.6120 1.4641 17 6 10.9862 8.4374 2.4063 18 7 10.6279 9.4053 3.2215 19 14 12.6798 8.4588 1.6184 20 1 13.4208 9.6638 2.0702 21 1 13.4268 7.2391 2.0175 22 1 12.5378 8.4909 0.1405 23 6 8.8926 7.3566 4.2919 24 9 9.5902 8.4920 4.7178 25 9 7.6244 7.3403 4.8824 26 9 9.5968 6.2077 4.6678 27 6 3.7929 3.5846 0.0661 28 6 3.3391 2.3621 -0.3926 29 1 2.9713 -0.1675 -1.0138 30 1 2.9717 -0.7930 0.6526 31 1 3.1607 0.7153 2.5457 32 1 3.9792 2.8896 3.3616 33 1 4.1660 5.2710 2.9284 34 1 4.1650 5.8966 1.2620 35 1 6.4804 4.3193 1.6187 36 1 8.5007 5.4147 2.0285 37 1 11.2433 10.1300 3.4139 38 1 3.9677 4.3916 -0.6301 39 1 3.1591 2.2140 -1.4471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898373.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:59 Heat of formation + Delta-G solvation = -117.467446 kcal Electronic energy + Delta-G solvation = -28706.567689 eV Core-core repulsion = 24006.871739 eV Total energy + Delta-G solvation = -4699.695950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.30954 -45.96226 -45.57896 -40.10564 -39.17092 -37.08356 -35.32100 -34.42088 -32.97145 -32.42484 -31.29453 -29.45533 -27.93488 -25.08830 -24.50119 -23.10553 -21.77419 -21.20733 -20.21656 -18.46240 -18.18787 -17.03706 -16.80860 -16.58412 -16.48975 -16.16649 -16.00594 -15.32495 -15.17353 -14.77266 -14.68595 -14.22614 -14.10959 -13.76604 -13.71680 -13.31484 -13.27728 -12.88470 -12.69967 -12.61952 -12.43239 -12.36048 -12.35893 -12.25012 -12.03333 -11.94534 -11.78693 -11.36589 -11.30686 -11.15444 -10.86866 -10.78348 -10.39787 -9.69446 -9.63962 -9.26029 -9.04525 -8.83482 -8.70493 -8.16336 -6.22916 -4.46876 0.78092 1.07304 2.36511 2.38044 3.04465 3.19699 3.24746 3.26359 3.48224 3.77456 3.80075 4.19593 4.24906 4.39729 4.56129 4.59739 4.65773 4.75750 4.86539 4.94289 4.97154 5.13464 5.22261 5.49553 5.52232 5.76113 5.78274 5.87641 5.91152 6.01414 6.12073 6.24425 6.34221 6.59749 6.73424 6.85053 7.15271 7.21052 7.37222 7.62744 7.68862 8.49528 8.65527 9.14641 9.25252 10.68586 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002220 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.545815 B =12609.187406 C =13162.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.208 3.792 3 C 0.017 3.983 4 C -0.093 4.093 5 C -0.108 4.108 6 C -0.098 4.098 7 C -0.093 4.093 8 C 0.179 3.821 9 N -0.750 5.750 10 C 0.699 3.301 11 O -0.584 6.584 12 N -0.726 5.726 13 C 0.263 3.737 14 H 0.085 0.915 15 C -0.552 4.552 16 H 0.076 0.924 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.284 1.284 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.416 3.584 24 F -0.138 7.138 25 F -0.217 7.217 26 F -0.210 7.210 27 C -0.098 4.098 28 C -0.108 4.108 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.269 0.731 38 H 0.129 0.871 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -16.565 -6.132 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.110 4.110 3 C -0.022 4.022 4 C -0.095 4.095 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.093 4.093 8 C 0.055 3.945 9 N -0.407 5.407 10 C 0.398 3.602 11 O -0.461 6.461 12 N -0.379 5.379 13 C 0.157 3.843 14 H 0.103 0.897 15 C -0.589 4.589 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.209 1.209 21 H -0.199 1.199 22 H -0.198 1.198 23 C 0.359 3.641 24 F -0.119 7.119 25 F -0.199 7.199 26 F -0.192 7.192 27 C -0.116 4.116 28 C -0.126 4.126 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.545 -15.398 -5.643 20.056 hybrid contribution 1.808 -0.714 -0.235 1.958 sum -9.737 -16.113 -5.878 19.723 Atomic orbital electron populations 1.81255 1.12978 1.08193 1.08549 1.29049 0.95034 0.93431 0.93452 1.18166 0.81753 0.96972 1.05338 1.19431 1.01584 0.94442 0.94044 1.21058 0.99194 0.97700 0.94626 1.21166 0.97966 0.92426 1.00089 1.20070 0.99752 0.95731 0.93790 1.19958 0.79763 0.92985 1.01779 1.45101 1.05960 1.16687 1.72959 1.16066 0.82378 0.83128 0.78591 1.90925 1.67748 1.33509 1.53906 1.45263 1.03715 1.19102 1.69773 1.19590 0.94334 0.85803 0.84605 0.89743 1.20832 0.97227 1.10355 1.30486 0.90557 1.25087 0.99669 0.95211 0.94490 1.70397 1.36436 1.10046 1.30365 0.86268 0.82212 0.77830 0.79487 1.20901 1.19853 1.19817 1.23188 0.72229 0.73731 0.94939 1.93401 1.77912 1.49090 1.91476 1.93071 1.43015 1.96410 1.87374 1.92982 1.80052 1.52759 1.93446 1.21157 0.98025 0.97376 0.95080 1.21057 0.99246 0.92709 0.99579 0.86285 0.86288 0.85533 0.85324 0.90838 0.90831 0.77307 0.77241 0.92065 0.85315 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.69 18.54 42.15 0.78 -3.91 16 2 C 0.21 1.49 15.41 -20.76 -0.32 1.17 16 3 C 0.02 0.05 5.83 -30.67 -0.18 -0.12 16 4 C -0.09 -0.53 5.09 -104.63 -0.53 -1.07 16 5 C -0.11 -0.70 9.70 -39.58 -0.38 -1.08 16 6 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 7 C -0.09 -0.85 5.25 -104.63 -0.55 -1.40 16 8 C 0.18 2.16 5.80 -5.19 -0.03 2.13 16 9 N -0.75 -10.35 5.55 -66.41 -0.37 -10.71 16 10 C 0.70 13.54 8.10 -86.92 -0.70 12.84 16 11 O -0.58 -13.80 14.92 5.29 0.08 -13.72 16 12 N -0.73 -14.52 4.99 -59.82 -0.30 -14.81 16 13 C 0.26 6.47 2.21 -69.09 -0.15 6.32 16 14 H 0.09 2.35 7.58 -51.93 -0.39 1.95 16 15 C -0.55 -13.85 8.47 -34.44 -0.29 -14.14 16 16 H 0.08 1.79 7.74 -52.49 -0.41 1.39 16 17 C 0.06 1.66 5.20 -17.82 -0.09 1.56 16 18 N -0.84 -22.85 9.50 55.43 0.53 -22.33 16 19 Si 0.92 19.82 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 C 0.42 10.63 2.81 37.16 0.10 10.73 16 24 F -0.14 -3.80 12.91 2.25 0.03 -3.78 16 25 F -0.22 -5.54 15.68 2.25 0.04 -5.51 16 26 F -0.21 -5.16 16.94 2.25 0.04 -5.12 16 27 C -0.10 -0.78 9.70 -39.58 -0.38 -1.17 16 28 C -0.11 -0.69 9.70 -39.58 -0.38 -1.07 16 29 H 0.12 0.09 8.09 -51.93 -0.42 -0.33 16 30 H 0.12 0.09 8.09 -51.93 -0.42 -0.33 16 31 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.39 4.36 8.48 -40.82 -0.35 4.02 16 36 H 0.39 6.69 8.55 -40.82 -0.35 6.34 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -33.58 358.08 -7.09 -40.67 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.00 Total: 5.53 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -4.28 Total: 13.51 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.64 Total: -51.77 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 0.10 Total: -14.40 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.58 -7.09 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898373.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.802 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds