Wall clock time and date at job start Sat Apr 11 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.50698 * 109.47254 * 200.56779 * 3 2 1 5 5 C 1.38240 * 120.00050 * 89.99754 * 4 3 2 6 6 C 1.38227 * 120.00313 * 180.02562 * 5 4 3 7 7 C 1.38244 * 120.00045 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00109 * 179.97438 * 7 6 5 9 9 N 1.46507 * 109.47141 * 89.99925 * 8 7 6 10 10 C 1.34779 * 119.99956 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99988 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99711 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10 15 15 C 1.50694 * 109.47115 * 204.99781 * 13 12 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.53000 * 109.47145 * 84.99707 * 13 12 10 24 24 F 1.39903 * 109.47440 * 180.02562 * 23 13 12 25 25 F 1.39899 * 109.47255 * 300.00046 * 23 13 12 26 26 F 1.39900 * 109.47102 * 59.99912 * 23 13 12 27 27 C 1.38229 * 119.99686 * 0.25425 * 7 6 5 28 28 C 1.38228 * 120.00351 * 270.02848 * 4 3 2 29 29 H 1.08999 * 109.47241 * 80.57321 * 3 2 1 30 30 H 1.09000 * 109.47660 * 320.57306 * 3 2 1 31 31 H 1.08000 * 119.99694 * 0.02562 * 5 4 3 32 32 H 1.08005 * 120.00345 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47247 * 330.00457 * 8 7 6 34 34 H 1.08993 * 109.47610 * 209.99905 * 8 7 6 35 35 H 0.97001 * 119.99730 * 0.02562 * 9 8 7 36 36 H 0.97005 * 120.00104 * 359.97438 * 12 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.00218 * 179.72879 * 27 7 6 39 39 H 1.07999 * 120.00163 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1097 1.3311 0.4991 5 6 3.3400 1.5208 1.8490 6 6 3.7997 2.7412 2.3069 7 6 4.0287 3.7725 1.4151 8 6 4.5294 5.1032 1.9144 9 7 5.9944 5.1051 1.9143 10 6 6.6669 6.1989 2.3241 11 8 6.0578 7.1839 2.6942 12 7 8.0147 6.2007 2.3235 13 6 8.7458 7.3894 2.7693 14 1 8.1970 8.2845 2.4764 15 6 10.1118 7.4069 2.1332 16 1 10.4062 6.6120 1.4641 17 6 10.9862 8.4374 2.4063 18 7 10.6279 9.4053 3.2215 19 14 12.6798 8.4588 1.6184 20 1 13.4208 9.6638 2.0702 21 1 13.4268 7.2391 2.0175 22 1 12.5378 8.4909 0.1405 23 6 8.8926 7.3566 4.2919 24 9 9.5902 8.4920 4.7178 25 9 7.6244 7.3403 4.8824 26 9 9.5968 6.2077 4.6678 27 6 3.7929 3.5846 0.0661 28 6 3.3391 2.3621 -0.3926 29 1 2.9713 -0.1675 -1.0138 30 1 2.9717 -0.7930 0.6526 31 1 3.1607 0.7153 2.5457 32 1 3.9792 2.8896 3.3616 33 1 4.1660 5.2710 2.9284 34 1 4.1650 5.8966 1.2620 35 1 6.4804 4.3193 1.6187 36 1 8.5007 5.4147 2.0285 37 1 11.2433 10.1300 3.4139 38 1 3.9677 4.3916 -0.6301 39 1 3.1591 2.2140 -1.4471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898373.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:58 Heat of formation + Delta-G solvation = -139.357124 kcal Electronic energy + Delta-G solvation = -28707.516896 eV Core-core repulsion = 24006.871739 eV Total energy + Delta-G solvation = -4700.645158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.37591 -48.00948 -47.68943 -41.08348 -40.30402 -37.73274 -36.70195 -35.89575 -34.48080 -33.60572 -31.82678 -30.66103 -29.22957 -26.57461 -25.92053 -23.64331 -23.48845 -21.96263 -21.86155 -20.04293 -18.87122 -18.78103 -18.65268 -18.53477 -17.95921 -17.04680 -16.83447 -16.74575 -16.42359 -16.02472 -15.93140 -15.19332 -15.06830 -14.93181 -14.88487 -14.61915 -14.50035 -14.41832 -14.27500 -14.25492 -13.99267 -13.91176 -13.84382 -13.66972 -13.33666 -12.99006 -12.96324 -12.73075 -12.58202 -12.45126 -12.19574 -11.96800 -11.79899 -11.56971 -11.31173 -10.65024 -10.30973 -9.80903 -9.74792 -9.67746 -8.18090 -6.48936 0.18595 0.53421 1.49105 1.51813 1.59865 1.77694 1.87897 1.88241 2.16454 2.39722 2.59572 2.76034 2.97521 3.35524 3.45553 3.67826 3.82987 3.91042 3.93067 3.96950 4.17772 4.23235 4.28464 4.55848 4.67073 4.70268 4.85198 4.87464 4.93231 5.06154 5.21156 5.45150 5.46135 5.49704 5.56590 5.62618 5.68261 5.71160 6.06489 6.15946 6.56136 6.66952 7.18643 7.23600 7.67512 8.74407 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.002220 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.545815 B =12609.187406 C =13162.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.238 3.762 3 C 0.022 3.978 4 C -0.086 4.086 5 C -0.109 4.109 6 C -0.110 4.110 7 C -0.106 4.106 8 C 0.181 3.819 9 N -0.725 5.725 10 C 0.695 3.305 11 O -0.630 6.630 12 N -0.719 5.719 13 C 0.271 3.729 14 H 0.045 0.955 15 C -0.560 4.560 16 H 0.094 0.906 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.984 3.016 20 H -0.286 1.286 21 H -0.265 1.265 22 H -0.262 1.262 23 C 0.412 3.588 24 F -0.151 7.151 25 F -0.219 7.219 26 F -0.203 7.203 27 C -0.108 4.108 28 C -0.108 4.108 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.411 0.589 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 -19.556 -7.791 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.079 4.079 3 C -0.017 4.017 4 C -0.088 4.088 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.106 4.106 8 C 0.057 3.943 9 N -0.382 5.382 10 C 0.395 3.605 11 O -0.511 6.511 12 N -0.374 5.374 13 C 0.163 3.837 14 H 0.063 0.937 15 C -0.597 4.597 16 H 0.112 0.888 17 C -0.192 4.192 18 N -0.509 5.509 19 Si 0.808 3.192 20 H -0.212 1.212 21 H -0.190 1.190 22 H -0.186 1.186 23 C 0.356 3.644 24 F -0.133 7.133 25 F -0.201 7.201 26 F -0.185 7.185 27 C -0.126 4.126 28 C -0.126 4.126 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.646 -18.474 -7.334 22.548 hybrid contribution 1.458 0.153 0.287 1.494 sum -9.188 -18.321 -7.047 21.673 Atomic orbital electron populations 1.81295 1.15404 1.10537 1.11216 1.29747 0.95641 0.91287 0.91198 1.18526 0.78789 0.96259 1.08125 1.19697 1.00153 0.95369 0.93572 1.21354 0.98250 0.97449 0.95617 1.21246 0.98593 0.93059 0.99929 1.19790 1.01722 0.94453 0.94666 1.19986 0.78277 0.94968 1.01031 1.44930 1.06765 1.15466 1.71038 1.16259 0.82073 0.83760 0.78412 1.90892 1.68552 1.35691 1.55961 1.44982 1.04057 1.18479 1.69840 1.19161 0.94401 0.86101 0.84030 0.93712 1.21188 0.97182 1.10792 1.30489 0.88846 1.26028 1.03620 0.94746 0.94839 1.70539 1.37729 1.10767 1.31893 0.85195 0.77314 0.77791 0.78919 1.21204 1.18959 1.18650 1.23371 0.72028 0.73511 0.95514 1.93374 1.78246 1.49967 1.91684 1.93061 1.43184 1.96413 1.87487 1.92980 1.79882 1.52203 1.93432 1.21254 0.98457 0.98416 0.94489 1.21368 0.98213 0.91987 1.01037 0.82865 0.82946 0.83311 0.85595 0.92177 0.91766 0.75338 0.75312 0.92209 0.85289 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.43 18.54 20.00 0.37 -10.05 16 2 C 0.24 2.75 15.41 89.44 1.38 4.13 16 3 C 0.02 0.03 5.83 28.04 0.16 0.20 16 4 C -0.09 -0.66 5.09 -19.87 -0.10 -0.76 16 5 C -0.11 -1.09 9.70 22.27 0.22 -0.87 16 6 C -0.11 -1.64 9.70 22.27 0.22 -1.42 16 7 C -0.11 -1.85 5.25 -19.87 -0.10 -1.95 16 8 C 0.18 4.42 5.80 85.63 0.50 4.92 16 9 N -0.72 -19.81 5.55 -482.29 -2.68 -22.49 16 10 C 0.70 27.31 8.10 179.05 1.45 28.76 16 11 O -0.63 -30.90 14.92 -3.98 -0.06 -30.96 16 12 N -0.72 -28.75 4.99 -461.42 -2.30 -31.05 16 13 C 0.27 13.58 2.21 44.24 0.10 13.68 16 14 H 0.05 2.61 7.58 -2.39 -0.02 2.59 16 15 C -0.56 -27.87 8.47 25.60 0.22 -27.65 16 16 H 0.09 4.22 7.74 -2.91 -0.02 4.20 16 17 C 0.01 0.66 5.20 84.66 0.44 1.10 16 18 N -0.88 -48.44 9.50 21.45 0.20 -48.24 16 19 Si 0.98 39.93 29.54 68.60 2.03 41.96 16 20 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C 0.41 21.45 2.81 71.98 0.20 21.65 16 24 F -0.15 -8.58 12.91 44.97 0.58 -8.00 16 25 F -0.22 -11.50 15.68 44.97 0.70 -10.79 16 26 F -0.20 -9.90 16.94 44.97 0.76 -9.14 16 27 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 28 C -0.11 -1.04 9.70 22.27 0.22 -0.83 16 29 H 0.15 -0.67 8.09 -2.39 -0.02 -0.69 16 30 H 0.15 -0.64 8.09 -2.39 -0.02 -0.66 16 31 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.06 1.63 8.09 -2.38 -0.02 1.61 16 34 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.41 8.54 8.48 -92.71 -0.79 7.76 16 36 H 0.41 13.44 8.55 -92.70 -0.79 12.65 16 37 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -75.83 358.08 4.27 -71.56 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -0.44 Total: 17.59 kcal Atomic # 6 Polarization: 34.51 SS G_CDS: 5.10 Total: 39.61 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.41 Total: -111.83 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.06 Total: -30.96 kcal Atomic # 9 Polarization: -29.98 SS G_CDS: 2.05 Total: -27.93 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -75.83 4.27 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898373.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.801 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds