Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00443 * 2 1 4 4 H 1.48499 * 109.47104 * 274.06846 * 3 2 1 5 5 H 1.48502 * 109.46874 * 34.06704 * 3 2 1 6 6 H 1.48495 * 109.47256 * 154.06844 * 3 2 1 7 7 C 1.38819 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99843 * 197.51926 * 7 2 1 9 9 N 1.36937 * 119.99737 * 17.52386 * 7 2 1 10 10 C 1.46928 * 120.62827 * 207.99565 * 9 7 2 11 11 C 1.53194 * 108.77708 * 233.63288 * 10 9 7 12 12 C 1.53043 * 109.31045 * 305.36420 * 11 10 9 13 13 C 1.52998 * 109.45872 * 181.38410 * 12 11 10 14 14 N 1.46503 * 109.47002 * 174.97356 * 13 12 11 15 15 C 1.34776 * 119.99867 * 180.02562 * 14 13 12 16 16 O 1.21535 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47995 * 120.00157 * 180.02562 * 15 14 13 18 18 C 1.39856 * 120.93347 * 359.97438 * 17 15 14 19 19 C 1.38210 * 119.02614 * 179.70735 * 18 17 15 20 20 Cl 1.73600 * 119.53232 * 180.25239 * 19 18 17 21 21 N 1.31947 * 120.94308 * 0.27204 * 19 18 17 22 22 C 1.31757 * 122.07523 * 0.02562 * 21 19 18 23 23 C 1.38488 * 120.86771 * 359.97438 * 22 21 19 24 24 F 1.35098 * 120.52328 * 180.02562 * 23 22 21 25 25 C 1.53042 * 109.52404 * 61.37332 * 12 11 10 26 26 C 1.46925 * 120.63167 * 28.02425 * 9 7 2 27 27 H 0.97005 * 119.99882 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58315 * 113.84147 * 10 9 7 29 29 H 1.08998 * 109.70530 * 353.49176 * 10 9 7 30 30 H 1.08997 * 109.49319 * 185.41763 * 11 10 9 31 31 H 1.09000 * 109.49894 * 65.31848 * 11 10 9 32 32 H 1.09002 * 109.46076 * 301.36332 * 12 11 10 33 33 H 1.09003 * 109.46684 * 54.97611 * 13 12 11 34 34 H 1.09002 * 109.47307 * 294.97729 * 13 12 11 35 35 H 0.96996 * 120.00175 * 0.02562 * 14 13 12 36 36 H 1.08006 * 120.48552 * 359.97404 * 18 17 15 37 37 H 1.07997 * 119.56235 * 179.97438 * 22 21 19 38 38 H 1.09006 * 109.50000 * 58.58132 * 25 12 11 39 39 H 1.09003 * 109.49656 * 178.67252 * 25 12 11 40 40 H 1.09004 * 109.58095 * 246.15772 * 26 9 7 41 41 H 1.09001 * 109.58779 * 6.43136 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4934 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0526 -1.2241 0.2810 9 7 1.3730 -2.3604 -0.3581 10 6 1.8143 -3.6544 0.1801 11 6 2.0771 -4.6104 -0.9878 12 6 0.8279 -4.6890 -1.8684 13 6 1.0747 -5.6695 -3.0167 14 7 -0.1584 -5.8364 -3.7899 15 6 -0.1787 -6.6599 -4.8566 16 8 0.8261 -7.2637 -5.1774 17 6 -1.4242 -6.8281 -5.6380 18 6 -2.5915 -6.1425 -5.2866 19 6 -3.7308 -6.3243 -6.0477 20 17 -5.1852 -5.4747 -5.6273 21 7 -3.7290 -7.1346 -7.0890 22 6 -2.6543 -7.8045 -7.4524 23 6 -1.4688 -7.6827 -6.7469 24 9 -0.3708 -8.3725 -7.1260 25 6 0.5164 -3.3035 -2.4391 26 6 0.2356 -2.3328 -1.2878 27 1 -0.4850 0.8401 0.0004 28 1 1.0366 -4.0673 0.8225 29 1 2.7302 -3.5200 0.7555 30 1 2.3121 -5.6018 -0.6004 31 1 2.9159 -4.2417 -1.5781 32 1 -0.0162 -5.0340 -1.2713 33 1 1.3828 -6.6334 -2.6115 34 1 1.8600 -5.2800 -3.6646 35 1 -0.9602 -5.3542 -3.5341 36 1 -2.6013 -5.4775 -4.4357 37 1 -2.6984 -8.4573 -8.3116 38 1 1.3701 -2.9472 -3.0157 39 1 -0.3595 -3.3647 -3.0850 40 1 -0.6709 -2.6379 -0.7650 41 1 0.1089 -1.3238 -1.6803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933485671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -33.080099 kcal Electronic energy + Delta-G solvation = -26769.882954 eV Core-core repulsion = 22625.642994 eV Total energy + Delta-G solvation = -4144.239960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -49.42100 -41.02714 -39.61287 -37.91110 -37.13265 -35.19428 -33.71735 -32.74652 -31.27361 -30.68547 -29.92970 -27.28665 -25.51900 -24.34125 -23.64605 -22.36646 -21.34195 -20.99560 -19.33113 -18.74414 -18.10661 -17.83117 -16.83858 -16.50423 -16.32142 -15.74683 -15.32420 -15.19339 -14.88028 -14.60150 -14.46514 -14.09250 -13.95570 -13.61289 -13.56746 -13.16905 -13.05232 -12.50609 -12.42051 -12.08708 -11.96286 -11.79472 -11.47318 -11.05151 -10.84430 -10.77581 -10.64346 -10.59622 -10.32436 -10.28486 -10.13044 -9.96014 -9.65471 -9.52495 -9.42880 -9.22173 -8.51478 -6.72615 -5.83907 -3.25882 -0.11859 0.09892 1.20933 2.33403 2.68364 3.02013 3.29739 3.34780 3.42446 3.43376 3.69708 3.92919 4.06375 4.37129 4.46034 4.68584 4.78976 4.97884 5.06718 5.13228 5.25765 5.36134 5.50474 5.69292 5.74213 5.79976 5.92519 6.05087 6.14258 6.24126 6.41261 6.47832 6.58431 6.66975 6.74376 6.85888 6.91891 7.15381 7.29108 7.57702 7.75842 7.81455 8.40422 9.16856 9.80215 10.36551 11.24672 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002586 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.673774 B =10826.186551 C =12234.875483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.092 4.092 13 C 0.123 3.877 14 N -0.710 5.710 15 C 0.555 3.445 16 O -0.516 6.516 17 C -0.110 4.110 18 C -0.094 4.094 19 C 0.157 3.843 20 Cl -0.008 7.008 21 N -0.435 5.435 22 C 0.092 3.908 23 C 0.110 3.890 24 F -0.098 7.098 25 C -0.136 4.136 26 C 0.171 3.829 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.017 0.983 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -15.331 -12.476 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.111 4.111 13 C 0.000 4.000 14 N -0.362 5.362 15 C 0.339 3.661 16 O -0.392 6.392 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.007 4.007 20 Cl 0.020 6.980 21 N -0.146 5.146 22 C -0.068 4.068 23 C 0.087 3.913 24 F -0.076 7.076 25 C -0.175 4.175 26 C 0.045 3.955 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.179 0.821 37 H 0.203 0.797 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.986 -15.630 -13.085 21.893 hybrid contribution 0.689 1.199 0.518 1.477 sum -7.296 -14.430 -12.567 20.480 Atomic orbital electron populations 1.70031 1.05253 1.25493 1.53925 1.25032 0.95284 0.98427 1.00875 0.86286 0.79217 0.83731 0.77623 1.21475 1.21774 1.20379 1.19210 0.92794 0.84921 1.41311 0.91660 1.44049 1.36454 1.01449 1.49548 1.20880 0.97706 0.86835 0.92630 1.21987 0.96491 0.99362 0.98584 1.21340 0.99659 0.95188 0.94881 1.21699 0.85279 0.99888 0.93101 1.45976 1.15653 1.45343 1.29211 1.17727 0.86769 0.80596 0.80985 1.90869 1.33779 1.46359 1.68176 1.20648 0.95727 0.98817 0.97041 1.22049 0.90022 0.99004 1.00488 1.21579 0.89463 0.96079 0.93560 1.98455 1.34716 1.73598 1.91193 1.66981 1.28973 1.05002 1.13601 1.22901 0.85512 0.98417 0.99924 1.18874 0.85369 0.92798 0.94291 1.91654 1.50523 1.75772 1.89649 1.22277 1.00075 0.95270 0.99925 1.20761 0.88747 0.98269 0.87745 0.93653 0.96489 0.92666 0.92839 0.91963 0.91121 0.91349 0.91041 0.76169 0.82101 0.79684 0.92348 0.93718 0.96471 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.22 55.49 0.62 -24.78 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.10 2.99 -172.32 -0.52 -14.62 16 10 C 0.15 2.87 6.51 -3.71 -0.02 2.84 16 11 C -0.12 -1.95 5.36 -26.61 -0.14 -2.09 16 12 C -0.09 -1.31 2.19 -90.58 -0.20 -1.51 16 13 C 0.12 1.56 5.06 -4.04 -0.02 1.54 16 14 N -0.71 -7.96 5.23 -61.20 -0.32 -8.28 16 15 C 0.55 6.94 7.79 -12.26 -0.10 6.85 16 16 O -0.52 -8.28 15.48 5.33 0.08 -8.20 16 17 C -0.11 -1.12 5.91 -104.60 -0.62 -1.74 16 18 C -0.09 -0.78 9.37 -38.99 -0.37 -1.15 16 19 C 0.16 1.40 7.27 -17.51 -0.13 1.28 16 20 Cl -0.01 -0.07 29.10 -51.86 -1.51 -1.58 16 21 N -0.43 -4.01 10.31 -10.35 -0.11 -4.11 16 22 C 0.09 0.72 11.17 -17.49 -0.20 0.52 16 23 C 0.11 1.07 7.33 -38.80 -0.28 0.79 16 24 F -0.10 -1.13 15.71 2.25 0.04 -1.09 16 25 C -0.14 -2.28 5.25 -26.61 -0.14 -2.42 16 26 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.68 5.79 -40.82 -0.24 3.44 16 36 H 0.16 1.00 6.53 -52.48 -0.34 0.66 16 37 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.63 7.15 -51.93 -0.37 0.26 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -31.25 356.84 -8.86 -40.10 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.03 Total: -0.81 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.46 Total: 1.76 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.32 Total: -51.80 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.51 Total: -1.58 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.25 -8.86 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933485671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.024 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds