Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00443 * 2 1 4 4 H 1.48499 * 109.47104 * 274.06846 * 3 2 1 5 5 H 1.48502 * 109.46874 * 34.06704 * 3 2 1 6 6 H 1.48495 * 109.47256 * 154.06844 * 3 2 1 7 7 C 1.38819 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99843 * 197.51926 * 7 2 1 9 9 N 1.36937 * 119.99737 * 17.52386 * 7 2 1 10 10 C 1.46928 * 120.62827 * 207.99565 * 9 7 2 11 11 C 1.53194 * 108.77708 * 233.63288 * 10 9 7 12 12 C 1.53043 * 109.31045 * 305.36420 * 11 10 9 13 13 C 1.52998 * 109.45872 * 181.38410 * 12 11 10 14 14 N 1.46503 * 109.47002 * 174.97356 * 13 12 11 15 15 C 1.34776 * 119.99867 * 180.02562 * 14 13 12 16 16 O 1.21535 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47995 * 120.00157 * 180.02562 * 15 14 13 18 18 C 1.39856 * 120.93347 * 359.97438 * 17 15 14 19 19 C 1.38210 * 119.02614 * 179.70735 * 18 17 15 20 20 Cl 1.73600 * 119.53232 * 180.25239 * 19 18 17 21 21 N 1.31947 * 120.94308 * 0.27204 * 19 18 17 22 22 C 1.31757 * 122.07523 * 0.02562 * 21 19 18 23 23 C 1.38488 * 120.86771 * 359.97438 * 22 21 19 24 24 F 1.35098 * 120.52328 * 180.02562 * 23 22 21 25 25 C 1.53042 * 109.52404 * 61.37332 * 12 11 10 26 26 C 1.46925 * 120.63167 * 28.02425 * 9 7 2 27 27 H 0.97005 * 119.99882 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58315 * 113.84147 * 10 9 7 29 29 H 1.08998 * 109.70530 * 353.49176 * 10 9 7 30 30 H 1.08997 * 109.49319 * 185.41763 * 11 10 9 31 31 H 1.09000 * 109.49894 * 65.31848 * 11 10 9 32 32 H 1.09002 * 109.46076 * 301.36332 * 12 11 10 33 33 H 1.09003 * 109.46684 * 54.97611 * 13 12 11 34 34 H 1.09002 * 109.47307 * 294.97729 * 13 12 11 35 35 H 0.96996 * 120.00175 * 0.02562 * 14 13 12 36 36 H 1.08006 * 120.48552 * 359.97404 * 18 17 15 37 37 H 1.07997 * 119.56235 * 179.97438 * 22 21 19 38 38 H 1.09006 * 109.50000 * 58.58132 * 25 12 11 39 39 H 1.09003 * 109.49656 * 178.67252 * 25 12 11 40 40 H 1.09004 * 109.58095 * 246.15772 * 26 9 7 41 41 H 1.09001 * 109.58779 * 6.43136 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4934 2.6263 0.7843 6 1 3.5881 1.4168 0.6122 7 6 2.0102 -1.2022 -0.0005 8 1 3.0526 -1.2241 0.2810 9 7 1.3730 -2.3604 -0.3581 10 6 1.8143 -3.6544 0.1801 11 6 2.0771 -4.6104 -0.9878 12 6 0.8279 -4.6890 -1.8684 13 6 1.0747 -5.6695 -3.0167 14 7 -0.1584 -5.8364 -3.7899 15 6 -0.1787 -6.6599 -4.8566 16 8 0.8261 -7.2637 -5.1774 17 6 -1.4242 -6.8281 -5.6380 18 6 -2.5915 -6.1425 -5.2866 19 6 -3.7308 -6.3243 -6.0477 20 17 -5.1852 -5.4747 -5.6273 21 7 -3.7290 -7.1346 -7.0890 22 6 -2.6543 -7.8045 -7.4524 23 6 -1.4688 -7.6827 -6.7469 24 9 -0.3708 -8.3725 -7.1260 25 6 0.5164 -3.3035 -2.4391 26 6 0.2356 -2.3328 -1.2878 27 1 -0.4850 0.8401 0.0004 28 1 1.0366 -4.0673 0.8225 29 1 2.7302 -3.5200 0.7555 30 1 2.3121 -5.6018 -0.6004 31 1 2.9159 -4.2417 -1.5781 32 1 -0.0162 -5.0340 -1.2713 33 1 1.3828 -6.6334 -2.6115 34 1 1.8600 -5.2800 -3.6646 35 1 -0.9602 -5.3542 -3.5341 36 1 -2.6013 -5.4775 -4.4357 37 1 -2.6984 -8.4573 -8.3116 38 1 1.3701 -2.9472 -3.0157 39 1 -0.3595 -3.3647 -3.0850 40 1 -0.6709 -2.6379 -0.7650 41 1 0.1089 -1.3238 -1.6803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933485671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = -52.438075 kcal Electronic energy + Delta-G solvation = -26770.722378 eV Core-core repulsion = 22625.642994 eV Total energy + Delta-G solvation = -4145.079385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.20900 -41.80607 -40.55206 -39.32274 -37.80463 -36.52010 -34.86657 -33.99286 -32.32074 -31.93339 -31.50024 -28.65921 -26.61472 -25.54782 -24.63598 -23.84359 -22.72612 -22.01453 -20.75260 -19.65261 -18.86569 -18.69501 -18.54649 -17.30276 -17.21761 -16.80615 -16.66570 -16.34121 -15.84777 -15.69547 -15.33304 -15.29687 -15.23444 -15.04644 -14.78969 -14.66198 -14.03354 -13.84124 -13.71054 -13.43958 -13.06787 -12.84056 -12.74636 -12.57468 -12.46198 -12.28418 -11.95623 -11.83656 -11.74623 -11.59660 -11.39135 -11.19846 -11.12870 -10.92066 -10.52382 -10.25339 -10.08629 -8.65332 -7.86705 -5.30550 -0.87373 -0.54882 0.54077 1.46216 1.48323 1.49334 1.56539 1.78352 2.25551 2.51782 2.60183 3.04413 3.22655 3.27572 3.33464 3.66296 3.72541 3.82713 3.95055 3.99509 4.06266 4.24560 4.39460 4.53781 4.55160 4.68595 4.74976 4.76630 4.94180 5.04292 5.05376 5.13969 5.20856 5.29758 5.32296 5.44214 5.57058 5.68041 5.81926 6.19755 6.25600 6.41351 6.89529 7.17736 7.90153 8.39837 9.19071 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002586 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.673774 B =10826.186551 C =12234.875483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.961 3.039 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.080 4.080 13 C 0.134 3.866 14 N -0.701 5.701 15 C 0.557 3.443 16 O -0.555 6.555 17 C -0.119 4.119 18 C -0.085 4.085 19 C 0.151 3.849 20 Cl -0.006 7.006 21 N -0.446 5.446 22 C 0.107 3.893 23 C 0.098 3.902 24 F -0.111 7.111 25 C -0.123 4.123 26 C 0.175 3.825 27 H 0.249 0.751 28 H 0.017 0.983 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.414 0.586 36 H 0.182 0.818 37 H 0.218 0.782 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.002 0.998 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -16.518 -13.271 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.790 3.210 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.155 4.155 12 C -0.099 4.099 13 C 0.011 3.989 14 N -0.353 5.353 15 C 0.343 3.657 16 O -0.434 6.434 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.012 4.012 20 Cl 0.023 6.977 21 N -0.157 5.157 22 C -0.052 4.052 23 C 0.075 3.925 24 F -0.089 7.089 25 C -0.162 4.162 26 C 0.050 3.950 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.252 0.748 36 H 0.199 0.801 37 H 0.235 0.765 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.020 0.980 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.347 -16.826 -13.870 23.348 hybrid contribution 0.763 1.540 0.798 1.895 sum -7.584 -15.286 -13.072 21.495 Atomic orbital electron populations 1.70164 1.06438 1.25709 1.55440 1.25712 0.96031 1.01218 1.01466 0.85343 0.78280 0.80049 0.77332 1.21418 1.22179 1.19505 1.19497 0.92932 0.86345 1.40438 0.91970 1.44344 1.36674 1.02181 1.50430 1.21046 0.97283 0.85908 0.94257 1.21855 0.96820 0.99707 0.97087 1.21191 0.99435 0.93960 0.95298 1.21453 0.85594 0.99553 0.92270 1.45858 1.15674 1.45056 1.28731 1.17975 0.86973 0.79888 0.80873 1.90851 1.35344 1.47977 1.69261 1.20497 0.95306 0.99958 0.97372 1.22152 0.89048 0.98629 1.00762 1.21706 0.89714 0.96100 0.93650 1.98459 1.34555 1.73519 1.91164 1.67053 1.29453 1.05348 1.13861 1.23338 0.84173 0.97737 0.99982 1.19113 0.85652 0.93009 0.94702 1.91622 1.51330 1.76149 1.89822 1.22070 1.00823 0.95275 0.98001 1.20604 0.87882 0.97642 0.88894 0.94157 0.96460 0.93125 0.89635 0.92669 0.89995 0.90453 0.91981 0.74812 0.80100 0.76529 0.93589 0.90860 0.97985 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 11.22 21.65 0.24 -53.40 16 2 C -0.05 -2.67 4.90 84.86 0.42 -2.25 16 3 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.26 -14.11 9.58 84.04 0.81 -13.31 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 9 N -0.61 -29.35 2.99 -699.09 -2.09 -31.45 16 10 C 0.14 5.40 6.51 86.36 0.56 5.96 16 11 C -0.12 -3.36 5.36 30.67 0.16 -3.20 16 12 C -0.08 -2.09 2.19 -10.77 -0.02 -2.12 16 13 C 0.13 3.07 5.06 86.38 0.44 3.51 16 14 N -0.70 -14.01 5.23 -465.82 -2.44 -16.45 16 15 C 0.56 13.03 7.79 86.83 0.68 13.71 16 16 O -0.56 -17.31 15.48 -3.83 -0.06 -17.37 16 17 C -0.12 -2.22 5.91 -19.85 -0.12 -2.34 16 18 C -0.08 -1.22 9.37 22.66 0.21 -1.01 16 19 C 0.15 2.40 7.27 84.67 0.62 3.01 16 20 Cl -0.01 -0.09 29.10 -2.72 -0.08 -0.17 16 21 N -0.45 -7.26 10.31 -186.67 -1.92 -9.18 16 22 C 0.11 1.43 11.17 84.76 0.95 2.38 16 23 C 0.10 1.77 7.33 22.77 0.17 1.94 16 24 F -0.11 -2.46 15.71 44.97 0.71 -1.75 16 25 C -0.12 -3.94 5.25 30.67 0.16 -3.77 16 26 C 0.18 7.80 5.31 86.36 0.46 8.25 16 27 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 1.95 7.94 -2.39 -0.02 1.93 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 6.31 5.79 -92.71 -0.54 5.78 16 36 H 0.18 1.74 6.53 -2.91 -0.02 1.72 16 37 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.91 7.15 -2.39 -0.02 1.90 16 40 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 41 H 0.05 2.56 6.06 -2.39 -0.01 2.55 16 Total: -1.00 -68.82 356.84 2.41 -66.41 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.54 Total: 6.26 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.48 Total: 10.77 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -6.21 Total: -110.48 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.06 Total: -17.37 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.71 Total: -1.75 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -68.82 2.41 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933485671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.972 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds