Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48492 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46814 * 299.99640 * 3 2 1 6 6 H 1.48496 * 109.47099 * 59.99857 * 3 2 1 7 7 C 1.38811 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.51821 * 127.61291 * 359.66482 * 9 7 2 11 11 C 1.54387 * 102.86791 * 140.54490 * 10 9 7 12 12 H 1.09004 * 117.61610 * 243.59355 * 11 10 9 13 13 C 1.54283 * 106.22517 * 24.11801 * 11 10 9 14 14 H 1.08998 * 121.81957 * 221.53323 * 13 11 10 15 15 C 1.48152 * 127.83558 * 180.02562 * 9 7 2 16 16 C 1.53001 * 59.72272 * 113.48750 * 13 11 10 17 17 H 1.08997 * 117.44525 * 252.35164 * 16 13 11 18 18 N 1.46502 * 117.40068 * 107.66580 * 16 13 11 19 19 C 1.34779 * 119.99796 * 135.77488 * 18 16 13 20 20 O 1.21544 * 120.00064 * 0.02562 * 19 18 16 21 21 C 1.47842 * 119.99566 * 179.97438 * 19 18 16 22 22 C 1.40018 * 120.55922 * 329.30305 * 21 19 18 23 23 C 1.38363 * 118.28345 * 179.73630 * 22 21 19 24 24 C 1.38351 * 119.30650 * 0.51626 * 23 22 21 25 25 N 1.31925 * 121.07618 * 359.74621 * 24 23 22 26 26 C 1.31691 * 121.88159 * 359.97438 * 25 24 23 27 27 C 1.50699 * 119.71747 * 179.97438 * 26 25 24 28 28 F 1.39897 * 109.47411 * 248.87086 * 27 26 25 29 29 F 1.39906 * 109.47353 * 8.87257 * 27 26 25 30 30 F 1.39904 * 109.47323 * 128.87153 * 27 26 25 31 31 H 0.97000 * 119.99709 * 0.02562 * 1 2 3 32 32 H 1.09003 * 112.26074 * 21.86009 * 10 9 7 33 33 H 1.09001 * 110.22402 * 258.27313 * 10 9 7 34 34 H 1.08994 * 110.40298 * 100.80333 * 15 9 7 35 35 H 1.08996 * 110.40372 * 338.36919 * 15 9 7 36 36 H 0.97001 * 120.00316 * 315.77759 * 18 16 13 37 37 H 1.07998 * 120.86172 * 0.02562 * 22 21 19 38 38 H 1.08004 * 120.34783 * 180.26618 * 23 22 21 39 39 H 1.07994 * 119.46492 * 179.71987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1793 -2.5891 0.0070 11 6 -0.3707 -3.7840 -0.9518 12 1 -0.9338 -3.6107 -1.8689 13 6 0.9654 -4.5555 -0.9511 14 1 1.3977 -4.9569 -1.8677 15 6 1.8844 -3.7601 0.0016 16 6 -0.2957 -5.1963 -0.3680 17 1 -0.3535 -5.2955 0.7159 18 7 -0.9188 -6.2778 -1.1350 19 6 -1.3384 -7.3941 -0.5071 20 8 -1.2004 -7.5033 0.6956 21 6 -1.9677 -8.4853 -1.2811 22 6 -2.7053 -8.2042 -2.4375 23 6 -3.2693 -9.2618 -3.1287 24 6 -3.0974 -10.5498 -2.6537 25 7 -2.4016 -10.7842 -1.5577 26 6 -1.8411 -9.8121 -0.8684 27 6 -1.0571 -10.1354 0.3774 28 9 -1.7462 -9.6604 1.4984 29 9 -0.8969 -11.5213 0.4811 30 9 0.1997 -9.5245 0.3092 31 1 -0.4850 0.8401 -0.0004 32 1 -0.7143 -1.7148 -0.3637 33 1 -0.5206 -2.8478 1.0094 34 1 1.8496 -4.1838 1.0052 35 1 2.9075 -3.7540 -0.3742 36 1 -1.0293 -6.1906 -2.0947 37 1 -2.8268 -7.1884 -2.7838 38 1 -3.8413 -9.0834 -4.0273 39 1 -3.5403 -11.3768 -3.1887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961877308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -68.027827 kcal Electronic energy + Delta-G solvation = -29452.172942 eV Core-core repulsion = 24754.620855 eV Total energy + Delta-G solvation = -4697.552087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.10399 -47.64927 -47.52661 -41.20214 -39.59700 -38.20430 -34.66521 -33.59155 -32.82275 -32.34226 -30.19550 -27.16732 -27.05479 -25.87496 -25.04907 -23.10257 -22.08224 -20.87296 -20.41366 -19.26866 -18.99811 -18.57654 -18.47168 -17.83375 -17.06747 -16.89896 -16.20201 -15.91921 -15.24725 -15.09126 -14.69060 -14.41900 -14.30838 -14.19985 -13.96996 -13.91168 -13.70114 -13.68713 -13.59378 -13.40473 -13.27343 -12.76977 -12.31594 -12.26697 -11.59210 -11.39553 -11.15573 -10.89345 -10.69393 -10.59188 -10.39704 -10.24360 -10.10840 -10.07949 -9.94504 -9.71810 -9.26514 -8.85834 -8.48174 -6.96415 -5.70536 -3.14371 -0.10489 0.35537 2.26981 2.37802 2.73293 3.01871 3.36922 3.37344 3.42568 3.44962 3.64225 4.06330 4.09358 4.23104 4.28213 4.33442 4.43780 4.46154 4.54754 4.74130 5.08084 5.15736 5.29437 5.29649 5.34928 5.52553 5.71647 5.75113 5.84891 6.01017 6.17392 6.48069 6.63254 6.68022 6.83802 6.98839 7.26059 7.30637 7.51303 7.74435 7.94862 8.22750 9.08431 9.72615 10.43224 11.33079 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002473 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.058368 B =11321.585221 C =11992.731500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.214 4.214 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.169 4.169 12 H 0.102 0.898 13 C -0.182 4.182 14 H 0.103 0.897 15 C 0.160 3.840 16 C 0.090 3.910 17 H 0.135 0.865 18 N -0.682 5.682 19 C 0.553 3.447 20 O -0.508 6.508 21 C -0.130 4.130 22 C -0.045 4.045 23 C -0.144 4.144 24 C 0.120 3.880 25 N -0.445 5.445 26 C 0.088 3.912 27 C 0.525 3.475 28 F -0.152 7.152 29 F -0.169 7.169 30 F -0.164 7.164 31 H 0.253 0.747 32 H 0.137 0.863 33 H 0.019 0.981 34 H 0.029 0.971 35 H 0.052 0.948 36 H 0.399 0.601 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 -21.071 -9.085 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.342 4.342 8 H 0.099 0.901 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.190 4.190 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.033 3.967 16 C -0.015 4.015 17 H 0.152 0.848 18 N -0.331 5.331 19 C 0.337 3.663 20 O -0.384 6.384 21 C -0.135 4.135 22 C -0.072 4.072 23 C -0.164 4.164 24 C -0.038 4.038 25 N -0.153 5.153 26 C -0.053 4.053 27 C 0.469 3.531 28 F -0.133 7.133 29 F -0.150 7.150 30 F -0.145 7.145 31 H 0.064 0.936 32 H 0.155 0.845 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.233 0.767 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.123 -21.716 -7.858 24.481 hybrid contribution 0.304 1.523 -0.898 1.794 sum -7.819 -20.194 -8.755 23.357 Atomic orbital electron populations 1.69484 1.04966 1.24680 1.58064 1.24759 0.95716 0.97728 1.02749 0.85933 0.78599 0.83334 0.77254 1.20526 1.21771 1.21704 1.19169 0.90452 0.82124 1.42424 0.90146 1.46137 1.01302 0.99414 1.85632 1.22573 0.85483 0.95082 0.93740 1.24671 0.99777 0.91565 1.02973 0.87973 1.24406 0.91133 1.02433 1.02398 0.87888 1.21098 0.94833 0.85751 0.95034 1.22036 0.97958 0.85142 0.96396 0.84781 1.45242 1.60095 1.16618 1.11096 1.17890 0.79065 0.81876 0.87457 1.90914 1.54781 1.79384 1.13314 1.20819 1.01101 0.94155 0.97451 1.21903 0.92702 1.01271 0.91288 1.22393 0.99495 0.93286 1.01230 1.23080 0.92825 0.97017 0.90847 1.67321 1.06918 1.34434 1.06634 1.21157 0.98763 0.89619 0.95795 1.17611 0.77939 0.74516 0.83008 1.93296 1.78936 1.87970 1.53121 1.93216 1.95595 1.29730 1.96454 1.93258 1.41946 1.82979 1.96362 0.93612 0.84547 0.96303 0.95380 0.92927 0.76666 0.82720 0.82717 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.12 55.49 0.56 -25.59 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.21 -5.84 10.42 -15.06 -0.16 -6.00 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.12 3.46 -165.68 -0.57 -15.70 16 10 C 0.16 3.64 6.43 -0.30 0.00 3.64 16 11 C -0.17 -3.07 6.96 -89.22 -0.62 -3.69 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 13 C -0.18 -3.18 7.06 -89.20 -0.63 -3.81 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.16 3.32 7.05 -2.38 -0.02 3.30 16 16 C 0.09 1.46 5.97 -67.93 -0.41 1.05 16 17 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 18 N -0.68 -8.64 5.49 -54.75 -0.30 -8.94 16 19 C 0.55 7.67 6.70 -12.33 -0.08 7.59 16 20 O -0.51 -8.95 12.30 5.33 0.07 -8.88 16 21 C -0.13 -1.42 5.80 -104.82 -0.61 -2.03 16 22 C -0.05 -0.31 9.47 -38.87 -0.37 -0.68 16 23 C -0.14 -0.68 10.10 -39.49 -0.40 -1.08 16 24 C 0.12 0.75 11.17 -17.47 -0.20 0.55 16 25 N -0.45 -4.63 9.75 -9.15 -0.09 -4.72 16 26 C 0.09 1.06 6.30 -82.17 -0.52 0.55 16 27 C 0.52 7.39 2.78 36.01 0.10 7.49 16 28 F -0.15 -2.38 15.17 2.25 0.03 -2.34 16 29 F -0.17 -2.28 16.87 2.25 0.04 -2.24 16 30 F -0.16 -2.50 15.16 2.25 0.03 -2.47 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.14 3.57 5.34 -51.93 -0.28 3.29 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.40 3.73 7.81 -40.82 -0.32 3.41 16 37 H 0.16 0.66 7.46 -52.49 -0.39 0.27 16 38 H 0.16 0.18 8.06 -52.48 -0.42 -0.25 16 39 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -33.30 341.88 -7.98 -41.28 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.88 Total: 1.39 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -4.00 Total: 6.39 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.40 Total: -54.94 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.30 -7.98 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961877308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.752 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds