Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48492 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46814 * 299.99640 * 3 2 1 6 6 H 1.48496 * 109.47099 * 59.99857 * 3 2 1 7 7 C 1.38811 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99871 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.51821 * 127.61291 * 359.66482 * 9 7 2 11 11 C 1.54387 * 102.86791 * 140.54490 * 10 9 7 12 12 H 1.09004 * 117.61610 * 243.59355 * 11 10 9 13 13 C 1.54283 * 106.22517 * 24.11801 * 11 10 9 14 14 H 1.08998 * 121.81957 * 221.53323 * 13 11 10 15 15 C 1.48152 * 127.83558 * 180.02562 * 9 7 2 16 16 C 1.53001 * 59.72272 * 113.48750 * 13 11 10 17 17 H 1.08997 * 117.44525 * 252.35164 * 16 13 11 18 18 N 1.46502 * 117.40068 * 107.66580 * 16 13 11 19 19 C 1.34779 * 119.99796 * 135.77488 * 18 16 13 20 20 O 1.21544 * 120.00064 * 0.02562 * 19 18 16 21 21 C 1.47842 * 119.99566 * 179.97438 * 19 18 16 22 22 C 1.40018 * 120.55922 * 329.30305 * 21 19 18 23 23 C 1.38363 * 118.28345 * 179.73630 * 22 21 19 24 24 C 1.38351 * 119.30650 * 0.51626 * 23 22 21 25 25 N 1.31925 * 121.07618 * 359.74621 * 24 23 22 26 26 C 1.31691 * 121.88159 * 359.97438 * 25 24 23 27 27 C 1.50699 * 119.71747 * 179.97438 * 26 25 24 28 28 F 1.39897 * 109.47411 * 248.87086 * 27 26 25 29 29 F 1.39906 * 109.47353 * 8.87257 * 27 26 25 30 30 F 1.39904 * 109.47323 * 128.87153 * 27 26 25 31 31 H 0.97000 * 119.99709 * 0.02562 * 1 2 3 32 32 H 1.09003 * 112.26074 * 21.86009 * 10 9 7 33 33 H 1.09001 * 110.22402 * 258.27313 * 10 9 7 34 34 H 1.08994 * 110.40298 * 100.80333 * 15 9 7 35 35 H 1.08996 * 110.40372 * 338.36919 * 15 9 7 36 36 H 0.97001 * 120.00316 * 315.77759 * 18 16 13 37 37 H 1.07998 * 120.86172 * 0.02562 * 22 21 19 38 38 H 1.08004 * 120.34783 * 180.26618 * 23 22 21 39 39 H 1.07994 * 119.46492 * 179.71987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1793 -2.5891 0.0070 11 6 -0.3707 -3.7840 -0.9518 12 1 -0.9338 -3.6107 -1.8689 13 6 0.9654 -4.5555 -0.9511 14 1 1.3977 -4.9569 -1.8677 15 6 1.8844 -3.7601 0.0016 16 6 -0.2957 -5.1963 -0.3680 17 1 -0.3535 -5.2955 0.7159 18 7 -0.9188 -6.2778 -1.1350 19 6 -1.3384 -7.3941 -0.5071 20 8 -1.2004 -7.5033 0.6956 21 6 -1.9677 -8.4853 -1.2811 22 6 -2.7053 -8.2042 -2.4375 23 6 -3.2693 -9.2618 -3.1287 24 6 -3.0974 -10.5498 -2.6537 25 7 -2.4016 -10.7842 -1.5577 26 6 -1.8411 -9.8121 -0.8684 27 6 -1.0571 -10.1354 0.3774 28 9 -1.7462 -9.6604 1.4984 29 9 -0.8969 -11.5213 0.4811 30 9 0.1997 -9.5245 0.3092 31 1 -0.4850 0.8401 -0.0004 32 1 -0.7143 -1.7148 -0.3637 33 1 -0.5206 -2.8478 1.0094 34 1 1.8496 -4.1838 1.0052 35 1 2.9075 -3.7540 -0.3742 36 1 -1.0293 -6.1906 -2.0947 37 1 -2.8268 -7.1884 -2.7838 38 1 -3.8413 -9.0834 -4.0273 39 1 -3.5403 -11.3768 -3.1887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961877308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -90.546472 kcal Electronic energy + Delta-G solvation = -29453.149424 eV Core-core repulsion = 24754.620855 eV Total energy + Delta-G solvation = -4698.528569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.18484 -48.73237 -48.64142 -41.96559 -40.74430 -39.56405 -36.11699 -34.74445 -33.77553 -33.34434 -31.91694 -28.83309 -28.12643 -27.46900 -25.91010 -24.04462 -23.39587 -22.03137 -21.96636 -20.81520 -19.87267 -19.56834 -19.55818 -18.94544 -18.74046 -17.96765 -17.25263 -16.68803 -16.52730 -16.22633 -16.05026 -15.52301 -15.47825 -15.37270 -15.06421 -15.00360 -14.95858 -14.82746 -14.73852 -14.60300 -14.44198 -14.03233 -13.78195 -13.26995 -13.16584 -13.08339 -13.01416 -12.75251 -12.09587 -11.97628 -11.76338 -11.67381 -11.48378 -11.26136 -11.00975 -10.87520 -10.67844 -10.60483 -9.80037 -8.96477 -7.76130 -5.23153 -0.77613 -0.17932 1.38077 1.43716 1.49073 1.49938 1.60063 1.70244 2.34033 2.44228 2.49495 2.80735 2.84608 3.23157 3.29374 3.34860 3.53035 3.54898 3.66924 3.76142 3.83518 3.89861 4.05323 4.13652 4.27233 4.36441 4.54803 4.70211 4.74859 4.86675 4.88676 4.98214 5.26756 5.30662 5.35397 5.45960 5.48300 5.77798 6.25250 6.28382 6.42600 6.95109 7.02971 7.69380 8.43826 9.25527 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002473 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.058368 B =11321.585221 C =11992.731500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.230 4.230 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.152 3.848 11 C -0.165 4.165 12 H 0.128 0.872 13 C -0.170 4.170 14 H 0.134 0.866 15 C 0.152 3.848 16 C 0.114 3.886 17 H 0.108 0.892 18 N -0.666 5.666 19 C 0.552 3.448 20 O -0.555 6.555 21 C -0.146 4.146 22 C -0.039 4.039 23 C -0.117 4.117 24 C 0.122 3.878 25 N -0.472 5.472 26 C 0.066 3.934 27 C 0.515 3.485 28 F -0.169 7.169 29 F -0.171 7.171 30 F -0.178 7.178 31 H 0.249 0.751 32 H 0.111 0.889 33 H -0.004 1.004 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.420 0.580 37 H 0.185 0.815 38 H 0.206 0.794 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -22.167 -12.674 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.359 4.359 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.186 4.186 12 H 0.146 0.854 13 C -0.192 4.192 14 H 0.151 0.849 15 C 0.026 3.974 16 C 0.007 3.993 17 H 0.125 0.875 18 N -0.316 5.316 19 C 0.338 3.662 20 O -0.433 6.433 21 C -0.152 4.152 22 C -0.065 4.065 23 C -0.136 4.136 24 C -0.035 4.035 25 N -0.181 5.181 26 C -0.074 4.074 27 C 0.459 3.541 28 F -0.150 7.150 29 F -0.152 7.152 30 F -0.159 7.159 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.014 0.986 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.258 0.742 37 H 0.203 0.797 38 H 0.223 0.777 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.184 -22.851 -11.485 27.173 hybrid contribution 0.574 1.743 0.213 1.847 sum -8.610 -21.108 -11.272 25.431 Atomic orbital electron populations 1.69733 1.06137 1.24962 1.58935 1.25577 0.96636 1.00780 1.03050 0.84934 0.77975 0.79230 0.76712 1.19308 1.21570 1.22196 1.19514 0.90934 0.83385 1.42036 0.89918 1.46430 1.02199 1.00407 1.85914 1.22329 0.84750 0.96398 0.93714 1.24337 1.01058 0.90510 1.02674 0.85396 1.24310 0.90280 1.02044 1.02526 0.84865 1.21210 0.96058 0.84481 0.95633 1.21492 0.97137 0.85179 0.95521 0.87450 1.44949 1.59437 1.15357 1.11843 1.18398 0.78242 0.82368 0.87142 1.90896 1.56550 1.80256 1.15603 1.20572 1.03118 0.92283 0.99206 1.22332 0.91162 1.03550 0.89438 1.22944 0.97407 0.91622 1.01592 1.23904 0.90996 0.99323 0.89278 1.67303 1.08165 1.34313 1.08303 1.20789 1.00370 0.90590 0.95604 1.18056 0.77820 0.74231 0.83964 1.93247 1.79180 1.88192 1.54393 1.93193 1.95626 1.29848 1.96559 1.93212 1.42987 1.83234 1.96467 0.94102 0.87177 0.98609 0.96209 0.92072 0.74182 0.79740 0.77747 0.76918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.04 10.12 21.65 0.22 -54.82 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.23 -12.77 10.42 84.03 0.88 -11.89 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -32.06 3.46 -678.10 -2.35 -34.41 16 10 C 0.15 7.35 6.43 85.80 0.55 7.90 16 11 C -0.16 -5.84 6.96 -9.89 -0.07 -5.91 16 12 H 0.13 3.89 8.14 -2.38 -0.02 3.87 16 13 C -0.17 -5.70 7.06 -9.87 -0.07 -5.77 16 14 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 15 C 0.15 6.35 7.05 86.55 0.61 6.96 16 16 C 0.11 3.61 5.97 44.99 0.27 3.88 16 17 H 0.11 4.10 7.40 -2.39 -0.02 4.09 16 18 N -0.67 -15.55 5.49 -445.41 -2.44 -18.00 16 19 C 0.55 14.94 6.70 86.78 0.58 15.52 16 20 O -0.55 -20.18 12.30 -3.86 -0.05 -20.23 16 21 C -0.15 -2.92 5.80 -19.99 -0.12 -3.04 16 22 C -0.04 -0.36 9.47 22.73 0.22 -0.14 16 23 C -0.12 -0.42 10.10 22.33 0.23 -0.19 16 24 C 0.12 0.97 11.17 84.71 0.95 1.92 16 25 N -0.47 -8.88 9.75 -182.85 -1.78 -10.66 16 26 C 0.07 1.56 6.30 42.89 0.27 1.83 16 27 C 0.51 15.08 2.78 71.24 0.20 15.28 16 28 F -0.17 -5.61 15.17 44.97 0.68 -4.93 16 29 F -0.17 -4.80 16.87 44.97 0.76 -4.04 16 30 F -0.18 -5.68 15.16 44.97 0.68 -4.99 16 31 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.11 5.97 5.34 -2.39 -0.01 5.96 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.42 6.27 7.81 -92.71 -0.72 5.54 16 37 H 0.19 0.51 7.46 -2.91 -0.02 0.49 16 38 H 0.21 -1.21 8.06 -2.91 -0.02 -1.23 16 39 H 0.21 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: -1.00 -78.48 341.88 3.11 -75.37 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.41 Total: 6.68 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 4.96 Total: 23.00 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -6.35 Total: -117.89 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 2.12 Total: -13.97 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -78.48 3.11 -75.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961877308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.174 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds