Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00012 * 2 1 4 4 H 1.48495 * 109.47257 * 270.00279 * 3 2 1 5 5 H 1.48502 * 109.46996 * 30.00408 * 3 2 1 6 6 H 1.48505 * 109.47103 * 150.00162 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00032 * 189.09862 * 7 2 1 9 9 N 1.36933 * 120.00233 * 9.09134 * 7 2 1 10 10 C 1.48153 * 127.83596 * 15.57675 * 9 7 2 11 11 C 1.54391 * 104.61752 * 140.41095 * 10 9 7 12 12 H 1.08999 * 117.61794 * 244.78467 * 11 10 9 13 13 C 1.54282 * 104.95682 * 23.87039 * 11 10 9 14 14 H 1.09005 * 121.81318 * 223.07601 * 13 11 10 15 15 C 1.48147 * 127.84310 * 195.57558 * 9 7 2 16 16 C 1.52996 * 118.11993 * 87.19406 * 11 10 9 17 17 H 1.09002 * 117.44236 * 16.10622 * 16 11 10 18 18 N 1.46498 * 117.44639 * 160.80914 * 16 11 10 19 19 C 1.34776 * 120.00276 * 224.24161 * 18 16 11 20 20 O 1.21515 * 119.99771 * 359.97438 * 19 18 16 21 21 C 1.48170 * 120.00053 * 179.97438 * 19 18 16 22 22 C 1.39302 * 119.72347 * 179.97438 * 21 19 18 23 23 C 1.38584 * 119.06212 * 179.97438 * 22 21 19 24 24 C 1.38634 * 118.48649 * 359.97438 * 23 22 21 25 25 C 1.38550 * 119.35106 * 359.97438 * 24 23 22 26 26 C 1.50704 * 119.55059 * 180.02562 * 25 24 23 27 27 F 1.39897 * 109.46970 * 89.99867 * 26 25 24 28 28 F 1.39902 * 109.47366 * 210.00469 * 26 25 24 29 29 F 1.39902 * 109.46547 * 329.99922 * 26 25 24 30 30 N 1.31530 * 120.90348 * 359.74378 * 25 24 23 31 31 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.40665 * 259.20224 * 10 9 7 33 33 H 1.09005 * 110.40345 * 21.62890 * 10 9 7 34 34 H 1.08997 * 110.40325 * 338.36794 * 15 9 7 35 35 H 1.08998 * 110.40477 * 100.79817 * 15 9 7 36 36 H 0.97002 * 119.99821 * 44.23767 * 18 16 11 37 37 H 1.07999 * 120.47277 * 359.95834 * 22 21 19 38 38 H 1.08000 * 120.76121 * 180.02562 * 23 22 21 39 39 H 1.07997 * 120.32096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0343 -2.5705 -0.7122 11 6 0.0637 -3.8160 -1.6192 12 1 -0.1156 -3.6798 -2.6857 13 6 1.2859 -4.5967 -1.0930 14 1 2.0173 -5.0420 -1.7676 15 6 1.8195 -3.7546 0.0858 16 6 -0.1185 -5.1924 -0.9764 17 1 -0.5683 -5.2278 0.0159 18 7 -0.4528 -6.3117 -1.8605 19 6 -1.4124 -7.1885 -1.5043 20 8 -2.0000 -7.0509 -0.4496 21 6 -1.7508 -8.3202 -2.3988 22 6 -2.7432 -9.2233 -2.0247 23 6 -3.0491 -10.2765 -2.8720 24 6 -2.3517 -10.3895 -4.0648 25 6 -1.3776 -9.4538 -4.3732 26 6 -0.6172 -9.5720 -5.6690 27 9 -1.2888 -8.8623 -6.6702 28 9 0.6681 -9.0442 -5.5053 29 9 -0.5249 -10.9194 -6.0342 30 7 -1.1112 -8.4606 -3.5531 31 1 -0.4850 0.8401 0.0004 32 1 -0.7318 -2.7500 0.1060 33 1 -0.3434 -1.7011 -1.2925 34 1 2.9090 -3.7785 0.1075 35 1 1.4116 -4.1190 1.0286 36 1 0.0165 -6.4217 -2.7023 37 1 -3.2667 -9.1047 -1.0876 38 1 -3.8139 -10.9925 -2.6095 39 1 -2.5658 -11.1990 -4.7469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962136191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -78.288029 kcal Electronic energy + Delta-G solvation = -28572.142553 eV Core-core repulsion = 23874.145550 eV Total energy + Delta-G solvation = -4697.997003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.56743 -48.12300 -47.98826 -41.22299 -39.56193 -38.26226 -34.64943 -33.52835 -32.97438 -32.33813 -30.22086 -27.22146 -27.15660 -26.08737 -25.04578 -23.20965 -22.08697 -20.83701 -20.40404 -19.28419 -19.05401 -18.95514 -18.88614 -17.76315 -16.91554 -16.77206 -16.55387 -15.92643 -15.49663 -14.94393 -14.84883 -14.78756 -14.67114 -14.46399 -14.18022 -14.15129 -14.08184 -14.00003 -13.62319 -13.29204 -13.23401 -12.76562 -12.56327 -12.23679 -11.61733 -11.49274 -11.02023 -10.83327 -10.73921 -10.72727 -10.43192 -10.21843 -10.17905 -10.06337 -10.02514 -9.73334 -9.19306 -8.75756 -8.38961 -6.87334 -5.79468 -3.14070 -0.09062 0.31826 1.93839 2.24540 2.79016 3.06029 3.18759 3.36466 3.39297 3.44225 3.46245 3.92373 3.94967 4.20111 4.25563 4.28073 4.30328 4.47410 4.66940 4.72194 5.13270 5.22355 5.34793 5.36239 5.37563 5.56132 5.71164 5.81323 5.90143 6.06965 6.22747 6.49817 6.66727 6.68917 6.84691 6.88184 7.35789 7.46492 7.53791 7.71925 8.03945 8.20499 9.10865 9.73602 10.50284 11.34831 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.002273 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.336866 B =12313.101960 C =13144.187508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.180 4.180 12 H 0.104 0.896 13 C -0.181 4.181 14 H 0.106 0.894 15 C 0.156 3.844 16 C 0.094 3.906 17 H 0.135 0.865 18 N -0.673 5.673 19 C 0.572 3.428 20 O -0.524 6.524 21 C 0.094 3.906 22 C -0.081 4.081 23 C -0.075 4.075 24 C -0.106 4.106 25 C 0.036 3.964 26 C 0.525 3.475 27 F -0.168 7.168 28 F -0.161 7.161 29 F -0.171 7.171 30 N -0.419 5.419 31 H 0.255 0.745 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.410 0.590 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -25.406 -10.719 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.122 0.878 13 C -0.203 4.203 14 H 0.124 0.876 15 C 0.029 3.971 16 C -0.011 4.011 17 H 0.153 0.847 18 N -0.320 5.320 19 C 0.356 3.644 20 O -0.400 6.400 21 C -0.046 4.046 22 C -0.101 4.101 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.106 4.106 26 C 0.469 3.531 27 F -0.150 7.150 28 F -0.142 7.142 29 F -0.152 7.152 30 N -0.131 5.131 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.246 0.754 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.984 -24.358 -10.146 27.056 hybrid contribution 0.192 0.095 -0.696 0.729 sum -5.792 -24.262 -10.842 27.199 Atomic orbital electron populations 1.69893 1.05058 1.25470 1.55631 1.24906 0.95652 0.98006 1.01683 0.86100 0.78687 0.83214 0.77625 1.21506 1.21648 1.20527 1.18998 0.90836 0.82283 1.43480 0.90480 1.45187 1.13326 0.99968 1.73121 1.21080 0.86928 0.92465 0.93673 1.24749 1.02022 0.92598 1.00728 0.87794 1.24337 0.90137 1.02404 1.03384 0.87621 1.21126 0.97279 0.85841 0.92848 1.21947 0.98970 0.84769 0.95415 0.84738 1.45246 1.37173 1.26145 1.23475 1.17612 0.80471 0.81249 0.85077 1.90828 1.51934 1.74073 1.23154 1.21295 0.95000 0.96846 0.91470 1.22442 0.94644 0.92123 1.00935 1.21713 0.98559 0.97391 0.92452 1.22082 0.93865 0.98494 0.98129 1.20912 0.98705 0.95534 0.95412 1.17789 0.77912 0.73931 0.83427 1.93261 1.80169 1.78507 1.63028 1.93264 1.39248 1.86227 1.95468 1.93215 1.96155 1.33326 1.92530 1.67020 1.24377 1.19185 1.02485 0.93508 0.95514 0.89022 0.92858 0.95440 0.75423 0.81939 0.82425 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.86 10.86 55.49 0.60 -26.26 16 2 C -0.01 -0.15 5.40 -17.44 -0.09 -0.24 16 3 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.22 3.38 -168.86 -0.57 -15.79 16 10 C 0.18 4.48 5.70 -2.40 -0.01 4.46 16 11 C -0.18 -3.46 7.06 -89.22 -0.63 -4.09 16 12 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 13 C -0.18 -3.24 7.05 -89.22 -0.63 -3.87 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.16 3.27 7.04 -2.41 -0.02 3.25 16 16 C 0.09 1.61 5.98 -67.93 -0.41 1.20 16 17 H 0.14 2.51 7.40 -51.93 -0.38 2.12 16 18 N -0.67 -9.68 5.55 -54.65 -0.30 -9.98 16 19 C 0.57 8.15 7.81 -12.18 -0.10 8.05 16 20 O -0.52 -8.85 15.89 5.35 0.09 -8.77 16 21 C 0.09 1.05 6.75 -83.01 -0.56 0.49 16 22 C -0.08 -0.65 9.63 -39.06 -0.38 -1.03 16 23 C -0.08 -0.39 10.17 -39.31 -0.40 -0.79 16 24 C -0.11 -0.63 9.44 -39.32 -0.37 -1.00 16 25 C 0.04 0.32 6.30 -82.60 -0.52 -0.20 16 26 C 0.52 4.70 3.43 36.01 0.12 4.82 16 27 F -0.17 -1.61 17.30 2.25 0.04 -1.57 16 28 F -0.16 -1.70 17.04 2.25 0.04 -1.67 16 29 F -0.17 -1.32 16.44 2.25 0.04 -1.28 16 30 N -0.42 -4.61 9.14 -6.06 -0.06 -4.66 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 2.47 6.51 -51.93 -0.34 2.14 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.41 5.31 8.16 -40.82 -0.33 4.98 16 37 H 0.16 1.18 7.64 -52.49 -0.40 0.77 16 38 H 0.16 0.26 8.06 -52.49 -0.42 -0.17 16 39 H 0.15 0.48 7.60 -52.49 -0.40 0.08 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -32.24 350.82 -7.95 -40.19 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.94 Total: 2.99 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -4.14 Total: 4.56 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.33 Total: -56.69 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.11 Total: -4.51 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.24 -7.95 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962136191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.100 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds