Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47240 * 300.00033 * 3 2 1 6 6 H 1.48502 * 109.47096 * 59.99868 * 3 2 1 7 7 C 1.38813 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 189.10405 * 7 2 1 9 9 N 1.36938 * 119.99906 * 9.10127 * 7 2 1 10 10 C 1.48148 * 127.83530 * 15.57095 * 9 7 2 11 11 C 1.54388 * 104.61591 * 140.41740 * 10 9 7 12 12 H 1.09004 * 117.61283 * 242.76888 * 11 10 9 13 13 C 1.54144 * 104.96610 * 23.83053 * 11 10 9 14 14 H 1.09000 * 121.78794 * 222.20535 * 13 11 10 15 15 C 1.48144 * 127.83978 * 195.57468 * 9 7 2 16 16 C 1.52995 * 59.75145 * 114.13774 * 13 11 10 17 17 H 1.08998 * 117.44536 * 252.37204 * 16 13 11 18 18 N 1.46509 * 117.44204 * 107.62607 * 16 13 11 19 19 C 1.34775 * 119.99983 * 135.99695 * 18 16 13 20 20 O 1.21519 * 120.00046 * 0.02562 * 19 18 16 21 21 C 1.48152 * 119.99999 * 180.02562 * 19 18 16 22 22 C 1.39837 * 120.91987 * 0.27341 * 21 19 18 23 23 C 1.38130 * 118.99926 * 180.22091 * 22 21 19 24 24 N 1.31827 * 120.89502 * 359.50098 * 23 22 21 25 25 C 1.31797 * 122.05356 * 0.25533 * 24 23 22 26 26 C 1.38175 * 120.89118 * 359.97438 * 25 24 23 27 27 C 1.50697 * 120.49635 * 179.97438 * 26 25 24 28 28 F 1.39895 * 109.47323 * 0.02562 * 27 26 25 29 29 F 1.39901 * 109.47127 * 120.00407 * 27 26 25 30 30 F 1.39902 * 109.46824 * 240.00071 * 27 26 25 31 31 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.40782 * 21.63260 * 10 9 7 33 33 H 1.09004 * 110.40914 * 259.20238 * 10 9 7 34 34 H 1.08997 * 110.40455 * 338.36479 * 15 9 7 35 35 H 1.09003 * 110.40881 * 100.80120 * 15 9 7 36 36 H 0.97003 * 119.99639 * 315.99773 * 18 16 13 37 37 H 1.08001 * 120.49982 * 359.97438 * 22 21 19 38 38 H 1.07997 * 119.55149 * 179.77145 * 23 22 21 39 39 H 1.07994 * 119.55222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5710 -0.7102 11 6 0.0638 -3.8173 -1.6162 12 1 -0.1484 -3.6883 -2.6775 13 6 1.2854 -4.5965 -1.0905 14 1 2.0086 -5.0540 -1.7656 15 6 1.8195 -3.7545 0.0889 16 6 -0.1185 -5.1931 -0.9722 17 1 -0.5677 -5.2277 0.0203 18 7 -0.4528 -6.3131 -1.8556 19 6 -1.1063 -7.3854 -1.3663 20 8 -1.4187 -7.4232 -0.1925 21 6 -1.4439 -8.5183 -2.2594 22 6 -1.0886 -8.4976 -3.6118 23 6 -1.4273 -9.5731 -4.4096 24 7 -2.0669 -10.6118 -3.9098 25 6 -2.4158 -10.6739 -2.6403 26 6 -2.1209 -9.6401 -1.7722 27 6 -2.5245 -9.7201 -0.3225 28 9 -3.1837 -10.9316 -0.0881 29 9 -1.3837 -9.6468 0.4839 30 9 -3.3804 -8.6563 -0.0174 31 1 -0.4850 0.8401 0.0004 32 1 -0.3432 -1.7021 -1.2912 33 1 -0.7318 -2.7498 0.1081 34 1 2.9090 -3.7785 0.1107 35 1 1.4114 -4.1182 1.0319 36 1 -0.2037 -6.2828 -2.7926 37 1 -0.5611 -7.6517 -4.0271 38 1 -1.1606 -9.5649 -5.4561 39 1 -2.9384 -11.5448 -2.2735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962181218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -72.696823 kcal Electronic energy + Delta-G solvation = -29389.160418 eV Core-core repulsion = 24691.405868 eV Total energy + Delta-G solvation = -4697.754550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.15824 -47.74154 -47.48547 -41.21843 -39.69786 -38.39017 -34.80640 -33.69411 -33.01880 -32.15495 -30.29410 -27.23785 -26.97216 -25.88474 -25.12500 -23.16435 -22.09863 -20.98373 -20.47608 -19.40804 -19.04513 -18.48230 -18.44611 -17.88398 -17.12458 -16.88281 -16.09052 -15.86871 -15.45983 -15.29928 -14.78168 -14.40378 -14.38568 -14.32629 -14.27056 -13.92904 -13.74486 -13.66005 -13.55625 -13.39080 -13.26997 -12.82241 -12.33338 -12.17677 -11.69902 -11.58786 -11.06577 -10.89253 -10.66942 -10.64295 -10.47236 -10.32215 -10.18118 -10.04976 -10.04928 -9.79874 -9.31942 -8.81809 -8.50776 -6.92777 -5.84913 -3.19451 -0.10173 0.22287 2.38471 2.43980 2.65814 3.10157 3.34706 3.40918 3.43399 3.47696 3.71476 3.80099 3.95454 4.07912 4.19213 4.33660 4.41765 4.48144 4.55286 4.89724 5.02771 5.03023 5.17721 5.24324 5.29643 5.48460 5.73861 5.74919 5.80126 5.94357 6.10285 6.42311 6.59273 6.63249 6.81479 7.11026 7.20900 7.28558 7.46998 7.66214 7.86465 8.14531 9.05558 9.68262 10.44389 11.29494 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.002435 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.000836 B =11498.050815 C =12107.537692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.184 3.816 11 C -0.176 4.176 12 H 0.104 0.896 13 C -0.179 4.179 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.092 3.908 17 H 0.136 0.864 18 N -0.681 5.681 19 C 0.547 3.453 20 O -0.503 6.503 21 C -0.031 4.031 22 C -0.145 4.145 23 C 0.130 3.870 24 N -0.467 5.467 25 C 0.149 3.851 26 C -0.191 4.191 27 C 0.522 3.478 28 F -0.183 7.183 29 F -0.161 7.161 30 F -0.160 7.160 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.399 0.601 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -21.883 -9.929 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.198 4.198 12 H 0.122 0.878 13 C -0.200 4.200 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.013 4.013 17 H 0.154 0.846 18 N -0.330 5.330 19 C 0.331 3.669 20 O -0.378 6.378 21 C -0.042 4.042 22 C -0.166 4.166 23 C -0.027 4.027 24 N -0.176 5.176 25 C -0.008 4.008 26 C -0.196 4.196 27 C 0.467 3.533 28 F -0.164 7.164 29 F -0.142 7.142 30 F -0.141 7.141 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.234 0.766 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.741 -22.288 -9.530 24.699 hybrid contribution 0.732 1.538 0.065 1.705 sum -4.009 -20.750 -9.465 23.156 Atomic orbital electron populations 1.69897 1.05070 1.25419 1.55646 1.24911 0.95658 0.98038 1.01626 0.86033 0.78869 0.83442 0.77311 1.20346 1.21603 1.21627 1.19038 0.90871 0.82212 1.43494 0.90415 1.45181 1.13300 1.00004 1.73087 1.21085 0.87045 0.92334 0.93720 1.24661 1.02081 0.92356 1.00666 0.87759 1.24377 0.90299 1.02159 1.03190 0.87808 1.21141 0.97332 0.85808 0.92904 1.21968 0.99078 0.84553 0.95709 0.84643 1.45187 1.57195 1.17597 1.13001 1.17992 0.79276 0.82187 0.87443 1.90909 1.51795 1.79236 1.15869 1.20314 0.95375 0.93769 0.94789 1.22455 1.00491 1.01174 0.92443 1.23115 0.90984 0.87687 1.00879 1.67795 1.10443 1.25902 1.13450 1.22810 0.93510 0.96469 0.88042 1.21267 1.05192 0.98163 0.94963 1.17675 0.75715 0.73696 0.86231 1.93155 1.81831 1.46031 1.95414 1.93263 1.49934 1.95812 1.75166 1.93268 1.70685 1.56206 1.93964 0.93520 0.88934 0.95496 0.92859 0.95317 0.76581 0.82959 0.80807 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 10.86 55.49 0.60 -25.72 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.55 29.56 -169.99 -5.03 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.22 10.35 -15.06 -0.16 -6.38 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -14.80 3.38 -168.83 -0.57 -15.37 16 10 C 0.18 4.29 5.70 -2.41 -0.01 4.27 16 11 C -0.18 -3.11 7.05 -89.30 -0.63 -3.74 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.18 -2.99 7.05 -89.27 -0.63 -3.62 16 14 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 15 C 0.15 3.17 7.04 -2.38 -0.02 3.16 16 16 C 0.09 1.45 5.98 -67.93 -0.41 1.05 16 17 H 0.14 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.68 -8.25 5.52 -54.65 -0.30 -8.55 16 19 C 0.55 7.28 7.63 -12.19 -0.09 7.19 16 20 O -0.50 -8.56 11.15 5.35 0.06 -8.50 16 21 C -0.03 -0.32 5.88 -104.65 -0.62 -0.93 16 22 C -0.15 -0.96 9.62 -39.02 -0.38 -1.34 16 23 C 0.13 0.78 11.17 -17.59 -0.20 0.59 16 24 N -0.47 -3.80 10.33 -13.31 -0.14 -3.94 16 25 C 0.15 1.25 10.59 -17.59 -0.19 1.06 16 26 C -0.19 -2.00 5.41 -104.07 -0.56 -2.56 16 27 C 0.52 6.48 2.78 36.00 0.10 6.58 16 28 F -0.18 -1.94 16.01 2.25 0.04 -1.90 16 29 F -0.16 -2.32 15.13 2.25 0.03 -2.29 16 30 F -0.16 -2.34 15.13 2.25 0.03 -2.31 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 3.44 6.97 -40.82 -0.28 3.16 16 37 H 0.15 0.56 6.54 -52.49 -0.34 0.22 16 38 H 0.17 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.18 1.10 7.17 -52.49 -0.38 0.72 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.93 339.58 -7.84 -40.76 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.81 Total: 1.10 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -3.88 Total: 5.08 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.41 Total: -53.58 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.06 Total: -8.50 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.10 Total: -6.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.93 -7.84 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962181218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.934 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds