Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00262 * 2 1 4 4 H 1.48501 * 109.47510 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47240 * 300.00033 * 3 2 1 6 6 H 1.48502 * 109.47096 * 59.99868 * 3 2 1 7 7 C 1.38813 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 189.10405 * 7 2 1 9 9 N 1.36938 * 119.99906 * 9.10127 * 7 2 1 10 10 C 1.48148 * 127.83530 * 15.57095 * 9 7 2 11 11 C 1.54388 * 104.61591 * 140.41740 * 10 9 7 12 12 H 1.09004 * 117.61283 * 242.76888 * 11 10 9 13 13 C 1.54144 * 104.96610 * 23.83053 * 11 10 9 14 14 H 1.09000 * 121.78794 * 222.20535 * 13 11 10 15 15 C 1.48144 * 127.83978 * 195.57468 * 9 7 2 16 16 C 1.52995 * 59.75145 * 114.13774 * 13 11 10 17 17 H 1.08998 * 117.44536 * 252.37204 * 16 13 11 18 18 N 1.46509 * 117.44204 * 107.62607 * 16 13 11 19 19 C 1.34775 * 119.99983 * 135.99695 * 18 16 13 20 20 O 1.21519 * 120.00046 * 0.02562 * 19 18 16 21 21 C 1.48152 * 119.99999 * 180.02562 * 19 18 16 22 22 C 1.39837 * 120.91987 * 0.27341 * 21 19 18 23 23 C 1.38130 * 118.99926 * 180.22091 * 22 21 19 24 24 N 1.31827 * 120.89502 * 359.50098 * 23 22 21 25 25 C 1.31797 * 122.05356 * 0.25533 * 24 23 22 26 26 C 1.38175 * 120.89118 * 359.97438 * 25 24 23 27 27 C 1.50697 * 120.49635 * 179.97438 * 26 25 24 28 28 F 1.39895 * 109.47323 * 0.02562 * 27 26 25 29 29 F 1.39901 * 109.47127 * 120.00407 * 27 26 25 30 30 F 1.39902 * 109.46824 * 240.00071 * 27 26 25 31 31 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.40782 * 21.63260 * 10 9 7 33 33 H 1.09004 * 110.40914 * 259.20238 * 10 9 7 34 34 H 1.08997 * 110.40455 * 338.36479 * 15 9 7 35 35 H 1.09003 * 110.40881 * 100.80120 * 15 9 7 36 36 H 0.97003 * 119.99639 * 315.99773 * 18 16 13 37 37 H 1.08001 * 120.49982 * 359.97438 * 22 21 19 38 38 H 1.07997 * 119.55149 * 179.77145 * 23 22 21 39 39 H 1.07994 * 119.55222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5710 -0.7102 11 6 0.0638 -3.8173 -1.6162 12 1 -0.1484 -3.6883 -2.6775 13 6 1.2854 -4.5965 -1.0905 14 1 2.0086 -5.0540 -1.7656 15 6 1.8195 -3.7545 0.0889 16 6 -0.1185 -5.1931 -0.9722 17 1 -0.5677 -5.2277 0.0203 18 7 -0.4528 -6.3131 -1.8556 19 6 -1.1063 -7.3854 -1.3663 20 8 -1.4187 -7.4232 -0.1925 21 6 -1.4439 -8.5183 -2.2594 22 6 -1.0886 -8.4976 -3.6118 23 6 -1.4273 -9.5731 -4.4096 24 7 -2.0669 -10.6118 -3.9098 25 6 -2.4158 -10.6739 -2.6403 26 6 -2.1209 -9.6401 -1.7722 27 6 -2.5245 -9.7201 -0.3225 28 9 -3.1837 -10.9316 -0.0881 29 9 -1.3837 -9.6468 0.4839 30 9 -3.3804 -8.6563 -0.0174 31 1 -0.4850 0.8401 0.0004 32 1 -0.3432 -1.7021 -1.2912 33 1 -0.7318 -2.7498 0.1081 34 1 2.9090 -3.7785 0.1107 35 1 1.4114 -4.1182 1.0319 36 1 -0.2037 -6.2828 -2.7926 37 1 -0.5611 -7.6517 -4.0271 38 1 -1.1606 -9.5649 -5.4561 39 1 -2.9384 -11.5448 -2.2735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962181218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -94.697751 kcal Electronic energy + Delta-G solvation = -29390.114450 eV Core-core repulsion = 24691.405868 eV Total energy + Delta-G solvation = -4698.708582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.12386 -48.68518 -48.53054 -41.98393 -40.82545 -39.70506 -36.25042 -34.77119 -34.15021 -33.09637 -31.95469 -28.94396 -28.02637 -27.36949 -26.06254 -24.09500 -23.36335 -22.08168 -22.01495 -20.91794 -19.94085 -19.43949 -19.39929 -18.89667 -18.70272 -18.02698 -17.16459 -16.71957 -16.63424 -16.43284 -15.86696 -15.64284 -15.39585 -15.31694 -15.25375 -15.00136 -14.96193 -14.88037 -14.70385 -14.65810 -14.56700 -13.95307 -13.79735 -13.37284 -13.27927 -12.91538 -12.89188 -12.75719 -12.14467 -12.01994 -11.90980 -11.70984 -11.60039 -11.36226 -10.90873 -10.80773 -10.71641 -10.59917 -9.82924 -8.93635 -7.92871 -5.29757 -0.80899 -0.33766 1.46444 1.47462 1.50386 1.54673 1.59107 1.67366 2.42313 2.47714 2.63176 2.82187 2.93859 3.15396 3.26031 3.29927 3.37873 3.47111 3.57793 3.78606 3.79760 3.87743 3.99527 4.10850 4.35142 4.40907 4.43919 4.51006 4.64388 4.74484 4.86141 4.98185 5.23795 5.26316 5.33729 5.43063 5.49600 5.63844 6.15596 6.24635 6.56270 6.91274 6.99444 7.66189 8.44046 9.21148 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.002435 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.000836 B =11498.050815 C =12107.537692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.186 3.814 11 C -0.172 4.172 12 H 0.135 0.865 13 C -0.160 4.160 14 H 0.142 0.858 15 C 0.146 3.854 16 C 0.113 3.887 17 H 0.105 0.895 18 N -0.664 5.664 19 C 0.545 3.455 20 O -0.549 6.549 21 C -0.050 4.050 22 C -0.126 4.126 23 C 0.142 3.858 24 N -0.478 5.478 25 C 0.152 3.848 26 C -0.207 4.207 27 C 0.516 3.484 28 F -0.175 7.175 29 F -0.178 7.178 30 F -0.179 7.179 31 H 0.250 0.750 32 H 0.061 0.939 33 H -0.007 1.007 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.421 0.579 37 H 0.189 0.811 38 H 0.218 0.782 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -23.408 -13.271 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.340 5.340 10 C 0.060 3.940 11 C -0.193 4.193 12 H 0.153 0.847 13 C -0.181 4.181 14 H 0.160 0.840 15 C 0.021 3.979 16 C 0.006 3.994 17 H 0.123 0.877 18 N -0.314 5.314 19 C 0.331 3.669 20 O -0.426 6.426 21 C -0.062 4.062 22 C -0.146 4.146 23 C -0.015 4.015 24 N -0.186 5.186 25 C -0.004 4.004 26 C -0.211 4.211 27 C 0.461 3.539 28 F -0.157 7.157 29 F -0.159 7.159 30 F -0.160 7.160 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.011 0.989 34 H 0.083 0.917 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.206 0.794 38 H 0.235 0.765 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.313 -23.865 -12.908 27.334 hybrid contribution 0.266 1.924 1.130 2.247 sum -3.047 -21.941 -11.778 25.088 Atomic orbital electron populations 1.70099 1.06587 1.25735 1.57146 1.25762 0.96487 1.01364 1.02009 0.84977 0.78329 0.79051 0.76722 1.18756 1.21520 1.22172 1.19433 0.91427 0.83413 1.42601 0.89875 1.45487 1.13770 1.01120 1.73669 1.20819 0.85989 0.93933 0.93213 1.24330 1.03474 0.90614 1.00918 0.84732 1.24271 0.90886 1.01347 1.01587 0.84019 1.21280 0.98111 0.84469 0.94077 1.21422 0.98181 0.84822 0.94986 0.87692 1.44869 1.56888 1.16127 1.13540 1.18494 0.78252 0.82800 0.87333 1.90898 1.53418 1.80169 1.18120 1.20128 0.97376 0.92679 0.95969 1.22852 0.99028 1.02320 0.90403 1.23865 0.88832 0.86288 1.02513 1.67900 1.10875 1.26939 1.12913 1.23004 0.93196 0.96227 0.87999 1.21179 1.06854 0.99449 0.93633 1.18012 0.75043 0.73401 0.87454 1.93157 1.81636 1.45347 1.95525 1.93216 1.50825 1.95899 1.75977 1.93220 1.71255 1.57289 1.94275 0.94091 0.92068 0.98908 0.91663 0.96631 0.73966 0.79419 0.76549 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 10.86 21.65 0.24 -56.37 16 2 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 3 Si 0.98 44.85 29.56 68.60 2.03 46.88 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -13.26 10.35 84.03 0.87 -12.39 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 9 N -0.62 -31.37 3.38 -688.05 -2.32 -33.70 16 10 C 0.19 8.99 5.70 86.53 0.49 9.48 16 11 C -0.17 -5.87 7.05 -9.94 -0.07 -5.94 16 12 H 0.13 3.80 8.14 -2.38 -0.02 3.78 16 13 C -0.16 -5.01 7.05 -9.92 -0.07 -5.08 16 14 H 0.14 3.46 8.14 -2.39 -0.02 3.44 16 15 C 0.15 5.97 7.04 86.55 0.61 6.58 16 16 C 0.11 3.44 5.98 44.99 0.27 3.71 16 17 H 0.11 3.97 7.40 -2.39 -0.02 3.95 16 18 N -0.66 -14.37 5.52 -445.11 -2.46 -16.82 16 19 C 0.54 13.89 7.63 86.88 0.66 14.55 16 20 O -0.55 -19.12 11.15 -3.78 -0.04 -19.16 16 21 C -0.05 -0.92 5.88 -19.88 -0.12 -1.04 16 22 C -0.13 -1.09 9.62 22.63 0.22 -0.87 16 23 C 0.14 1.00 11.17 84.67 0.95 1.95 16 24 N -0.48 -6.07 10.33 -196.01 -2.03 -8.09 16 25 C 0.15 2.23 10.59 84.68 0.90 3.13 16 26 C -0.21 -4.09 5.41 -19.50 -0.11 -4.20 16 27 C 0.52 13.08 2.78 71.24 0.20 13.28 16 28 F -0.18 -3.75 16.01 44.97 0.72 -3.03 16 29 F -0.18 -5.35 15.13 44.97 0.68 -4.67 16 30 F -0.18 -5.48 15.13 44.97 0.68 -4.80 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.06 3.31 6.51 -2.39 -0.02 3.30 16 33 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.42 5.31 6.97 -92.71 -0.65 4.66 16 37 H 0.19 0.20 6.54 -2.91 -0.02 0.18 16 38 H 0.22 -0.35 8.06 -2.91 -0.02 -0.38 16 39 H 0.19 2.05 7.17 -2.91 -0.02 2.03 16 Total: -1.00 -76.99 339.58 3.24 -73.75 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.49 Total: 5.93 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.26 Total: 20.09 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -6.57 Total: -114.99 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.04 Total: -19.16 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 2.08 Total: -12.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.99 3.24 -73.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962181218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.952 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds