Wall clock time and date at job start Sat Apr 11 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35662 * 117.00235 * 2 1 4 4 N 1.29834 * 126.10397 * 359.95428 * 3 2 1 5 5 N 1.26092 * 117.79387 * 179.78745 * 4 3 2 6 6 C 1.29919 * 117.76479 * 0.47533 * 5 4 3 7 7 N 1.39271 * 126.12161 * 179.82659 * 6 5 4 8 8 C 1.34773 * 119.99726 * 359.69366 * 7 6 5 9 9 O 1.21592 * 119.99997 * 354.91065 * 8 7 6 10 10 N 1.34780 * 120.00073 * 174.91019 * 8 7 6 11 11 C 1.46956 * 120.59264 * 5.05403 * 10 8 7 12 12 C 1.53369 * 108.63794 * 235.24849 * 11 10 8 13 13 N 1.46959 * 108.63525 * 310.58038 * 12 11 10 14 14 C 1.34783 * 120.59170 * 235.20255 * 13 12 11 15 15 O 1.21689 * 120.00200 * 5.22247 * 14 13 12 16 16 C 1.46369 * 119.99767 * 185.22790 * 14 13 12 17 17 H 1.08002 * 120.00347 * 354.97629 * 16 14 13 18 18 C 1.40054 * 120.00271 * 174.98139 * 16 14 13 19 19 N 1.30675 * 119.99468 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00256 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46688 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47020 * 299.99546 * 20 18 16 23 23 H 1.48493 * 109.47275 * 59.99944 * 20 18 16 24 24 C 1.46963 * 118.81676 * 55.47572 * 13 12 11 25 25 C 1.46967 * 120.59186 * 185.08141 * 10 8 7 26 26 S 1.76482 * 126.10777 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47534 * 300.00444 * 1 2 3 29 29 H 1.08996 * 109.46797 * 60.00801 * 1 2 3 30 30 H 0.96996 * 120.00442 * 179.68601 * 7 6 5 31 31 H 1.09004 * 109.60845 * 115.50256 * 11 10 8 32 32 H 1.09002 * 109.61077 * 354.99727 * 11 10 8 33 33 H 1.09004 * 109.60984 * 190.83324 * 12 11 10 34 34 H 1.09000 * 109.60929 * 70.32769 * 12 11 10 35 35 H 0.97000 * 119.99999 * 180.02562 * 19 18 16 36 36 H 1.09007 * 109.60832 * 64.26177 * 24 13 12 37 37 H 1.08989 * 109.61465 * 184.77839 * 24 13 12 38 38 H 1.09004 * 109.60847 * 244.49059 * 25 10 8 39 39 H 1.08995 * 109.61420 * 4.83794 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.4577 2.3667 -0.0008 5 7 2.1865 3.3956 0.0034 6 6 3.4744 3.2250 -0.0011 7 7 4.4361 4.2324 -0.0010 8 6 4.0570 5.5257 -0.0021 9 8 2.8796 5.8141 -0.0965 10 7 4.9831 6.4995 0.1016 11 6 6.4157 6.1718 0.1052 12 6 7.0511 6.7654 1.3686 13 7 6.6463 8.1736 1.4807 14 6 7.5724 9.1473 1.5852 15 8 8.7547 8.8750 1.4920 16 6 7.1559 10.5322 1.8110 17 1 6.1064 10.7871 1.8128 18 6 8.1183 11.5270 2.0244 19 7 9.3882 11.2186 2.0226 20 14 7.5869 13.2946 2.3118 21 1 8.7871 14.1464 2.5094 22 1 6.8246 13.7800 1.1335 23 1 6.7266 13.3626 3.5203 24 6 5.2135 8.5009 1.4828 25 6 4.5782 7.9078 0.2137 26 16 3.7875 1.4880 0.0006 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 5.3786 4.0033 -0.0001 31 1 6.8907 6.5985 -0.7783 32 1 6.5434 5.0893 0.1053 33 1 8.1368 6.7014 1.2967 34 1 6.7069 6.2150 2.2443 35 1 10.0548 11.9075 2.1708 36 1 4.7415 8.0712 2.3664 37 1 5.0854 9.5832 1.4864 38 1 4.9225 8.4582 -0.6620 39 1 3.4924 7.9720 0.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364327900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:37 Heat of formation + Delta-G solvation = 13.770044 kcal Electronic energy + Delta-G solvation = -26841.390954 eV Core-core repulsion = 22721.146237 eV Total energy + Delta-G solvation = -4120.244717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52198 -40.49187 -38.96998 -38.17982 -36.03371 -35.32330 -33.17357 -32.59172 -31.05263 -30.20410 -28.32394 -27.53219 -26.18751 -25.63173 -23.44725 -22.96929 -21.42727 -20.41101 -20.08982 -19.21347 -18.32242 -17.97251 -16.99050 -16.51848 -16.39146 -15.97580 -15.69736 -15.30554 -14.98857 -14.80470 -14.65282 -14.30577 -14.21264 -14.03978 -13.65693 -13.35482 -12.65038 -12.55696 -12.18980 -12.14971 -11.76074 -11.58397 -11.26370 -11.17872 -11.14073 -11.01771 -10.98675 -10.79474 -10.47321 -10.33023 -10.18678 -9.91580 -9.78367 -8.99984 -8.88102 -8.57100 -7.73560 -7.35750 -6.30441 -4.76165 -0.19212 0.28899 0.68656 2.12255 2.35671 2.93198 3.10015 3.11541 3.16188 3.17246 3.42836 3.99411 4.16249 4.34384 4.44470 4.50735 4.81851 4.83605 4.98942 5.15830 5.16392 5.30026 5.45717 5.52621 5.71817 5.76094 5.84082 5.97374 6.20865 6.21657 6.31677 6.34444 6.45072 6.66335 7.35485 7.40505 7.52627 7.98208 8.19707 8.26169 8.48496 8.91741 9.25961 10.44182 10.63048 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.002166 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.998661 B =12925.640596 C =13509.807096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.274 6.274 3 C 0.191 3.809 4 N -0.294 5.294 5 N -0.233 5.233 6 C 0.262 3.738 7 N -0.635 5.635 8 C 0.702 3.298 9 O -0.532 6.532 10 N -0.612 5.612 11 C 0.095 3.905 12 C 0.106 3.894 13 N -0.643 5.643 14 C 0.559 3.441 15 O -0.576 6.576 16 C -0.544 4.544 17 H 0.074 0.926 18 C 0.088 3.912 19 N -0.766 5.766 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.109 3.891 25 C 0.113 3.887 26 S 0.123 5.877 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.421 0.579 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.270 0.730 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -19.663 -4.258 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.178 6.178 3 C -0.129 4.129 4 N -0.147 5.147 5 N -0.077 5.077 6 C -0.111 4.111 7 N -0.293 5.293 8 C 0.401 3.599 9 O -0.403 6.403 10 N -0.349 5.349 11 C -0.029 4.029 12 C -0.019 4.019 13 N -0.381 5.381 14 C 0.366 3.634 15 O -0.459 6.459 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.395 5.395 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.191 1.191 23 H -0.192 1.192 24 C -0.017 4.017 25 C -0.010 4.010 26 S 0.359 5.641 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.262 0.738 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.325 -19.565 -4.339 23.019 hybrid contribution 0.042 0.653 0.152 0.672 sum -11.283 -18.911 -4.187 22.416 Atomic orbital electron populations 1.23191 0.75572 1.04164 1.03378 1.86266 1.23555 1.19770 1.88164 1.27984 0.92130 0.90086 1.02731 1.71519 1.29338 0.92909 1.20891 1.71319 0.98895 1.18887 1.18622 1.26226 0.91062 0.89981 1.03857 1.42253 1.07898 1.03112 1.76041 1.15786 0.85611 0.79544 0.78920 1.91063 1.15078 1.80325 1.53865 1.47325 1.05382 1.06513 1.75699 1.22238 0.80431 0.98786 1.01430 1.21484 1.01349 0.84826 0.94246 1.48192 1.05508 1.04708 1.79724 1.18282 0.83993 0.84812 0.76330 1.90596 1.16992 1.82750 1.55554 1.20923 0.93822 0.90936 1.52348 0.90826 1.25730 0.94408 1.00343 0.92760 1.69991 1.00811 1.34140 1.34515 0.86426 0.78753 0.81986 0.79631 1.20537 1.19138 1.19182 1.21959 0.82583 1.02173 0.94941 1.22251 1.01166 0.77846 0.99739 1.85847 1.01786 1.00718 1.75781 0.87350 0.91485 0.91499 0.73827 0.90119 0.91233 0.88277 0.93385 0.91908 0.93252 0.87355 0.90739 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.69 101.05 1.08 1.30 16 2 O -0.27 -2.52 10.56 -18.69 -0.20 -2.72 16 3 C 0.19 2.13 8.53 51.92 0.44 2.57 16 4 N -0.29 -4.13 10.97 30.33 0.33 -3.80 16 5 N -0.23 -3.68 9.79 31.06 0.30 -3.37 16 6 C 0.26 3.31 8.42 -86.84 -0.73 2.58 16 7 N -0.64 -7.44 5.33 -15.99 -0.09 -7.52 16 8 C 0.70 10.58 8.26 -86.92 -0.72 9.86 16 9 O -0.53 -10.01 14.50 5.28 0.08 -9.93 16 10 N -0.61 -8.78 2.95 -177.94 -0.52 -9.31 16 11 C 0.10 1.22 6.59 -3.60 -0.02 1.20 16 12 C 0.11 1.78 6.60 -3.60 -0.02 1.75 16 13 N -0.64 -13.28 2.94 -173.88 -0.51 -13.79 16 14 C 0.56 14.80 7.62 -12.99 -0.10 14.70 16 15 O -0.58 -17.43 14.45 5.20 0.08 -17.36 16 16 C -0.54 -14.33 8.86 -35.63 -0.32 -14.65 16 17 H 0.07 1.75 5.66 -52.49 -0.30 1.45 16 18 C 0.09 2.33 5.50 -17.36 -0.10 2.24 16 19 N -0.77 -21.93 11.84 55.55 0.66 -21.28 16 20 Si 0.91 19.24 29.56 -169.99 -5.02 14.22 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 C 0.11 1.88 6.51 -3.36 -0.02 1.86 16 25 C 0.11 1.73 6.60 -3.36 -0.02 1.71 16 26 S 0.12 1.11 23.54 -107.50 -2.53 -1.42 16 27 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.42 3.42 6.27 -40.82 -0.26 3.17 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.60 5.55 -51.93 -0.29 0.32 16 33 H 0.10 1.83 6.99 -51.93 -0.36 1.47 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 36 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 37 H 0.11 1.94 5.34 -51.94 -0.28 1.66 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.10 1.46 7.02 -51.93 -0.36 1.10 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -37.04 344.04 -6.71 -43.75 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -3.94 Total: 2.23 kcal Atomic # 6 Polarization: 25.64 SS G_CDS: -0.53 Total: 25.12 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.17 Total: -59.07 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.53 Total: -1.42 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.04 -6.71 -43.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364327900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.515 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds