Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35662 * 117.00235 * 2 1 4 4 N 1.29834 * 126.10397 * 359.95428 * 3 2 1 5 5 N 1.26092 * 117.79387 * 179.78745 * 4 3 2 6 6 C 1.29919 * 117.76479 * 0.47533 * 5 4 3 7 7 N 1.39271 * 126.12161 * 179.82659 * 6 5 4 8 8 C 1.34773 * 119.99726 * 359.69366 * 7 6 5 9 9 O 1.21592 * 119.99997 * 354.91065 * 8 7 6 10 10 N 1.34780 * 120.00073 * 174.91019 * 8 7 6 11 11 C 1.46956 * 120.59264 * 5.05403 * 10 8 7 12 12 C 1.53369 * 108.63794 * 235.24849 * 11 10 8 13 13 N 1.46959 * 108.63525 * 310.58038 * 12 11 10 14 14 C 1.34783 * 120.59170 * 235.20255 * 13 12 11 15 15 O 1.21689 * 120.00200 * 5.22247 * 14 13 12 16 16 C 1.46369 * 119.99767 * 185.22790 * 14 13 12 17 17 H 1.08002 * 120.00347 * 354.97629 * 16 14 13 18 18 C 1.40054 * 120.00271 * 174.98139 * 16 14 13 19 19 N 1.30675 * 119.99468 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00256 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46688 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47020 * 299.99546 * 20 18 16 23 23 H 1.48493 * 109.47275 * 59.99944 * 20 18 16 24 24 C 1.46963 * 118.81676 * 55.47572 * 13 12 11 25 25 C 1.46967 * 120.59186 * 185.08141 * 10 8 7 26 26 S 1.76482 * 126.10777 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47534 * 300.00444 * 1 2 3 29 29 H 1.08996 * 109.46797 * 60.00801 * 1 2 3 30 30 H 0.96996 * 120.00442 * 179.68601 * 7 6 5 31 31 H 1.09004 * 109.60845 * 115.50256 * 11 10 8 32 32 H 1.09002 * 109.61077 * 354.99727 * 11 10 8 33 33 H 1.09004 * 109.60984 * 190.83324 * 12 11 10 34 34 H 1.09000 * 109.60929 * 70.32769 * 12 11 10 35 35 H 0.97000 * 119.99999 * 180.02562 * 19 18 16 36 36 H 1.09007 * 109.60832 * 64.26177 * 24 13 12 37 37 H 1.08989 * 109.61465 * 184.77839 * 24 13 12 38 38 H 1.09004 * 109.60847 * 244.49059 * 25 10 8 39 39 H 1.08995 * 109.61420 * 4.83794 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.4577 2.3667 -0.0008 5 7 2.1865 3.3956 0.0034 6 6 3.4744 3.2250 -0.0011 7 7 4.4361 4.2324 -0.0010 8 6 4.0570 5.5257 -0.0021 9 8 2.8796 5.8141 -0.0965 10 7 4.9831 6.4995 0.1016 11 6 6.4157 6.1718 0.1052 12 6 7.0511 6.7654 1.3686 13 7 6.6463 8.1736 1.4807 14 6 7.5724 9.1473 1.5852 15 8 8.7547 8.8750 1.4920 16 6 7.1559 10.5322 1.8110 17 1 6.1064 10.7871 1.8128 18 6 8.1183 11.5270 2.0244 19 7 9.3882 11.2186 2.0226 20 14 7.5869 13.2946 2.3118 21 1 8.7871 14.1464 2.5094 22 1 6.8246 13.7800 1.1335 23 1 6.7266 13.3626 3.5203 24 6 5.2135 8.5009 1.4828 25 6 4.5782 7.9078 0.2137 26 16 3.7875 1.4880 0.0006 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 5.3786 4.0033 -0.0001 31 1 6.8907 6.5985 -0.7783 32 1 6.5434 5.0893 0.1053 33 1 8.1368 6.7014 1.2967 34 1 6.7069 6.2150 2.2443 35 1 10.0548 11.9075 2.1708 36 1 4.7415 8.0712 2.3664 37 1 5.0854 9.5832 1.4864 38 1 4.9225 8.4582 -0.6620 39 1 3.4924 7.9720 0.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364327900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -16.136751 kcal Electronic energy + Delta-G solvation = -26842.687810 eV Core-core repulsion = 22721.146237 eV Total energy + Delta-G solvation = -4121.541573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.48756 -41.61102 -39.96140 -39.55441 -37.63806 -36.42993 -34.81924 -34.50078 -32.37565 -31.18137 -29.30227 -28.76510 -27.84349 -26.60464 -24.76860 -24.22097 -22.69648 -21.48904 -21.27237 -20.37794 -19.44674 -19.07882 -18.19740 -17.82111 -17.65293 -17.33894 -16.91745 -16.44277 -16.25415 -15.95744 -15.78675 -15.71537 -15.67793 -15.35112 -14.64712 -14.49047 -14.36957 -13.61693 -13.53623 -13.15777 -13.04173 -12.98724 -12.87224 -12.70109 -12.45201 -12.23173 -12.06001 -12.04944 -11.99364 -11.95025 -11.50467 -10.97232 -10.90310 -10.52445 -10.20309 -9.78587 -9.59104 -8.99301 -8.28089 -6.81951 -0.99661 -0.57811 -0.16968 1.12327 1.38613 1.43047 1.44816 1.56055 1.98892 2.08916 2.25377 2.47310 2.48757 2.81530 3.36544 3.56704 3.60257 3.87764 3.93673 4.09315 4.25613 4.33680 4.38787 4.45318 4.48592 4.69846 4.70580 4.76128 4.83709 4.89583 5.05149 5.20322 5.40556 5.51922 5.62270 5.73629 6.12739 6.34966 6.47545 6.90365 7.14654 7.37987 7.56612 8.46605 8.67539 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.034861 B = 0.002166 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.998661 B =12925.640596 C =13509.807096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.273 6.273 3 C 0.183 3.817 4 N -0.325 5.325 5 N -0.279 5.279 6 C 0.238 3.762 7 N -0.621 5.621 8 C 0.706 3.294 9 O -0.572 6.572 10 N -0.611 5.611 11 C 0.106 3.894 12 C 0.102 3.898 13 N -0.645 5.645 14 C 0.545 3.455 15 O -0.626 6.626 16 C -0.569 4.569 17 H 0.094 0.906 18 C 0.032 3.968 19 N -0.820 5.820 20 Si 0.990 3.010 21 H -0.278 1.278 22 H -0.254 1.254 23 H -0.256 1.256 24 C 0.111 3.889 25 C 0.123 3.877 26 S 0.218 5.782 27 H 0.144 0.856 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.437 0.563 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.274 0.726 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 -21.196 -4.448 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.177 6.177 3 C -0.137 4.137 4 N -0.178 5.178 5 N -0.123 5.123 6 C -0.135 4.135 7 N -0.280 5.280 8 C 0.405 3.595 9 O -0.446 6.446 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.022 4.022 13 N -0.382 5.382 14 C 0.352 3.648 15 O -0.513 6.513 16 C -0.605 4.605 17 H 0.112 0.888 18 C -0.183 4.183 19 N -0.449 5.449 20 Si 0.810 3.190 21 H -0.202 1.202 22 H -0.178 1.178 23 H -0.180 1.180 24 C -0.013 4.013 25 C -0.001 4.001 26 S 0.454 5.546 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.371 -21.187 -4.536 24.950 hybrid contribution 0.306 0.884 0.219 0.961 sum -12.065 -20.303 -4.317 24.009 Atomic orbital electron populations 1.23469 0.74121 1.06364 1.02984 1.86304 1.25046 1.18666 1.87675 1.28404 0.93899 0.90181 1.01168 1.71473 1.30032 0.93561 1.22781 1.71281 1.00686 1.20466 1.19841 1.26441 0.90869 0.92129 1.04105 1.41938 1.08639 1.01966 1.75502 1.15829 0.84923 0.80388 0.78327 1.91044 1.16767 1.81216 1.55530 1.47274 1.05836 1.06107 1.75523 1.22203 0.79054 1.01506 0.98984 1.21675 1.00570 0.82963 0.97032 1.47998 1.06106 1.05602 1.78498 1.18556 0.84053 0.86197 0.76003 1.90549 1.19223 1.83884 1.57681 1.21477 0.95104 0.91626 1.52327 0.88792 1.26898 0.94145 1.05558 0.91745 1.70159 1.02480 1.36052 1.36220 0.85175 0.78434 0.75288 0.80127 1.20248 1.17831 1.17960 1.22022 0.80710 1.02096 0.96497 1.22049 1.01132 0.78516 0.98412 1.85529 0.98834 0.96207 1.74026 0.83819 0.91940 0.91882 0.71831 0.90409 0.86356 0.90365 0.91749 0.91651 0.92378 0.88099 0.90768 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.69 113.37 1.21 1.51 16 2 O -0.27 -4.46 10.56 -89.78 -0.95 -5.41 16 3 C 0.18 3.77 8.53 130.54 1.11 4.88 16 4 N -0.33 -8.94 10.97 -172.04 -1.89 -10.83 16 5 N -0.28 -8.63 9.79 -55.64 -0.54 -9.17 16 6 C 0.24 5.58 8.42 179.03 1.51 7.09 16 7 N -0.62 -13.10 5.33 -322.76 -1.72 -14.82 16 8 C 0.71 20.19 8.26 179.05 1.48 21.66 16 9 O -0.57 -21.23 14.50 -4.01 -0.06 -21.29 16 10 N -0.61 -16.53 2.95 -835.13 -2.46 -18.99 16 11 C 0.11 2.51 6.59 86.42 0.57 3.08 16 12 C 0.10 3.34 6.60 86.42 0.57 3.91 16 13 N -0.65 -26.76 2.94 -822.24 -2.42 -29.18 16 14 C 0.55 29.63 7.62 86.36 0.66 30.28 16 15 O -0.63 -39.41 14.45 -4.31 -0.06 -39.48 16 16 C -0.57 -30.40 8.86 24.83 0.22 -30.18 16 17 H 0.09 4.45 5.66 -2.91 -0.02 4.43 16 18 C 0.03 1.72 5.50 85.31 0.47 2.19 16 19 N -0.82 -48.35 11.84 21.84 0.26 -48.09 16 20 Si 0.99 39.51 29.56 68.60 2.03 41.54 16 21 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 24 C 0.11 3.79 6.51 86.57 0.56 4.36 16 25 C 0.12 3.64 6.60 86.57 0.57 4.21 16 26 S 0.22 3.28 23.54 -56.49 -1.33 1.95 16 27 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.44 5.57 6.27 -92.71 -0.58 4.99 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.12 1.62 5.55 -2.39 -0.01 1.60 16 33 H 0.08 2.93 6.99 -2.38 -0.02 2.92 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.10 3.58 5.34 -2.39 -0.01 3.56 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.10 2.99 7.02 -2.39 -0.02 2.97 16 Total: -1.00 -84.77 344.04 0.35 -84.42 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.56 Total: 16.37 kcal Atomic # 6 Polarization: 44.05 SS G_CDS: 8.93 Total: 52.99 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -8.77 Total: -131.09 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -1.07 Total: -66.17 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.33 Total: 1.95 kcal Total: -84.77 0.35 -84.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364327900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.282 kcal (2) G-P(sol) polarization free energy of solvation -84.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds