Wall clock time and date at job start Sat Apr 11 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48498 * 109.47229 * 240.00173 * 3 2 1 5 5 H 1.48497 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00151 * 3 2 1 7 7 C 1.39940 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00162 * 169.07947 * 7 2 1 9 9 C 1.41393 * 119.99853 * 349.07235 * 7 2 1 10 10 C 1.40740 * 120.24424 * 330.93883 * 9 7 2 11 11 C 1.37592 * 119.74364 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.25272 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.49895 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24860 * 359.97438 * 13 12 11 15 15 S 1.76196 * 120.12602 * 180.02562 * 14 13 12 16 16 O 1.42095 * 106.40349 * 359.11142 * 15 14 13 17 17 O 1.42102 * 106.40127 * 132.03294 * 15 14 13 18 18 N 1.65607 * 107.21798 * 245.56708 * 15 14 13 19 19 C 1.46508 * 119.99361 * 67.69552 * 18 15 14 20 20 H 1.08998 * 109.47078 * 22.94366 * 19 18 15 21 21 C 1.52993 * 109.46791 * 262.93834 * 19 18 15 22 22 O 1.42900 * 109.47458 * 296.59602 * 21 19 18 23 23 C 1.52997 * 109.46568 * 142.93977 * 19 18 15 24 24 H 1.09000 * 110.43655 * 61.83006 * 23 19 18 25 25 C 1.54807 * 110.49154 * 299.28152 * 23 19 18 26 26 C 1.55229 * 101.98904 * 220.52396 * 25 23 19 27 27 O 1.44373 * 103.56539 * 36.87672 * 26 25 23 28 28 C 1.43745 * 106.97860 * 320.01507 * 27 26 25 29 29 H 0.97001 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.12398 * 0.04179 * 10 9 7 31 31 H 1.08000 * 119.87525 * 179.72405 * 11 10 9 32 32 H 1.08000 * 119.75103 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.87786 * 180.02562 * 13 12 11 34 34 H 0.96992 * 120.00413 * 247.69720 * 18 15 14 35 35 H 1.08996 * 109.47733 * 56.60025 * 21 19 18 36 36 H 1.09002 * 109.46848 * 176.59963 * 21 19 18 37 37 H 0.96700 * 114.00290 * 180.02562 * 22 21 19 38 38 H 1.09006 * 110.90713 * 338.64292 * 25 23 19 39 39 H 1.08995 * 110.90967 * 102.24729 * 25 23 19 40 40 H 1.09001 * 110.51209 * 278.38037 * 26 25 23 41 41 H 1.08996 * 110.64217 * 155.43903 * 26 25 23 42 42 H 1.09001 * 109.87688 * 267.08778 * 28 27 26 43 43 H 1.09001 * 110.00223 * 146.00955 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0734 -1.2203 -0.1777 9 6 1.3203 -2.4254 0.2310 10 6 0.1604 -2.4419 1.0280 11 6 -0.5004 -3.6287 1.2471 12 6 -0.0281 -4.8053 0.6856 13 6 1.1132 -4.8008 -0.1009 14 6 1.7904 -3.6253 -0.3335 15 16 3.2405 -3.6232 -1.3345 16 8 3.4582 -4.9711 -1.7282 17 8 3.0863 -2.5577 -2.2620 18 7 4.5111 -3.2108 -0.3557 19 6 4.9474 -4.1254 0.7025 20 1 4.6337 -5.1401 0.4579 21 6 4.3188 -3.7036 2.0321 22 8 4.7925 -2.4044 2.3921 23 6 6.4720 -4.0775 0.8212 24 1 6.8010 -3.0758 1.0975 25 6 7.1331 -4.5178 -0.5076 26 6 8.3195 -5.3841 -0.0060 27 8 7.7788 -6.0634 1.1475 28 6 6.9653 -5.1108 1.8526 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2096 -1.5266 1.4657 31 1 -1.3882 -3.6446 1.8620 32 1 -0.5529 -5.7324 0.8632 33 1 1.4720 -5.7230 -0.5336 34 1 4.9665 -2.3640 -0.4830 35 1 3.2339 -3.6793 1.9296 36 1 4.5946 -4.4186 2.8073 37 1 4.4346 -2.0726 3.2270 38 1 6.4436 -5.1125 -1.1068 39 1 7.4894 -3.6545 -1.0695 40 1 9.1601 -4.7518 0.2799 41 1 8.6201 -6.1024 -0.7686 42 1 7.5579 -4.6140 2.6207 43 1 6.1133 -5.6141 2.3097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365375173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:17 Heat of formation + Delta-G solvation = -156.381389 kcal Electronic energy + Delta-G solvation = -29574.207077 eV Core-core repulsion = 25517.831632 eV Total energy + Delta-G solvation = -4056.375445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.69210 -37.66350 -37.06353 -36.22803 -34.86036 -34.63209 -33.89636 -31.46329 -30.23675 -29.79299 -29.55351 -27.06976 -25.53987 -23.43749 -21.94074 -21.63873 -21.16893 -20.26578 -18.72583 -17.73723 -17.31831 -16.85269 -16.55304 -16.13217 -15.83134 -15.47721 -15.22014 -14.79753 -14.46700 -14.28331 -14.18695 -13.67316 -13.31076 -13.18682 -12.92639 -12.76764 -12.32255 -12.07761 -11.90759 -11.69718 -11.52236 -11.45499 -11.30074 -11.17262 -11.14300 -11.03394 -10.97228 -10.81987 -10.70854 -10.55040 -10.50732 -9.93533 -9.70499 -9.63977 -9.47853 -9.42642 -8.78465 -8.05510 -7.62589 -7.03831 -4.76941 1.50837 2.30873 2.71813 2.96196 3.00178 3.11835 3.77785 3.82566 3.97601 4.39287 4.46878 4.59646 4.67517 4.75712 4.94603 5.15609 5.20213 5.23773 5.35623 5.45623 5.55327 5.59607 5.65413 5.71883 5.74967 5.87533 5.97453 6.02239 6.10558 6.20825 6.24150 6.37029 6.48498 6.76945 6.85639 6.92931 7.06000 7.28466 7.46616 7.55089 7.67147 7.78018 7.87942 7.91066 8.27541 8.49534 8.62453 9.88747 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.005079 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.246035 B = 5511.790191 C = 6210.254878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.188 3.812 10 C -0.158 4.158 11 C -0.078 4.078 12 C -0.251 4.251 13 C -0.004 4.004 14 C -0.777 4.777 15 S 2.697 3.303 16 O -0.998 6.998 17 O -0.964 6.964 18 N -1.108 6.108 19 C 0.171 3.829 20 H 0.102 0.898 21 C 0.054 3.946 22 O -0.560 6.560 23 C -0.120 4.120 24 H 0.099 0.901 25 C -0.154 4.154 26 C 0.046 3.954 27 O -0.381 6.381 28 C 0.054 3.946 29 H 0.288 0.712 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.376 0.624 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -3.155 5.560 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.107 0.893 9 C 0.184 3.816 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.272 4.272 13 C -0.024 4.024 14 C -0.873 4.873 15 S 2.794 3.206 16 O -0.989 6.989 17 O -0.954 6.954 18 N -0.864 5.864 19 C 0.062 3.938 20 H 0.120 0.880 21 C -0.026 4.026 22 O -0.365 6.365 23 C -0.141 4.141 24 H 0.117 0.883 25 C -0.191 4.191 26 C -0.030 4.030 27 O -0.299 6.299 28 C -0.024 4.024 29 H 0.099 0.901 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.248 0.752 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.222 0.778 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.035 -3.639 4.130 11.446 hybrid contribution -0.579 1.508 1.105 1.957 sum 9.456 -2.131 5.234 11.016 Atomic orbital electron populations 1.69772 1.07774 1.30203 1.32371 1.25950 0.94854 1.01874 0.91411 0.86222 0.80228 0.79103 0.80647 1.18130 1.20087 1.18299 1.19836 0.96619 0.90600 1.39543 0.89318 1.16963 0.90141 0.89654 0.84879 1.21519 0.98250 0.96687 1.01346 1.20899 0.97477 0.93551 0.97722 1.20476 1.01081 0.97017 1.08582 1.20254 0.93650 0.95077 0.93425 1.29877 1.25720 1.00881 1.30801 1.01189 0.73327 0.72443 0.73611 1.93450 1.86156 1.37613 1.81641 1.93550 1.85901 1.55855 1.60096 1.55636 1.51173 1.30245 1.49306 1.20757 0.93181 0.93431 0.86386 0.87986 1.22822 0.99475 0.84712 0.95592 1.86416 1.71958 1.33363 1.44754 1.22726 0.95161 1.01018 0.95169 0.88302 1.23288 0.97738 1.00525 0.97596 1.23594 0.95708 0.95682 0.88030 1.88854 1.65854 1.35646 1.39595 1.23221 0.94646 0.90171 0.94348 0.90131 0.85818 0.88933 0.88821 0.87507 0.75188 0.91477 0.93643 0.77817 0.89559 0.90069 0.92436 0.89095 0.92187 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.80 10.87 55.55 0.60 -18.20 16 2 C 0.08 1.89 5.25 -17.34 -0.09 1.80 16 3 Si 0.91 17.85 29.57 -169.99 -5.03 12.83 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.62 7.61 -37.75 -0.29 -10.91 16 8 H 0.09 2.04 5.74 -52.48 -0.30 1.74 16 9 C 0.19 4.59 5.38 -106.82 -0.57 4.02 16 10 C -0.16 -3.76 8.66 -38.87 -0.34 -4.10 16 11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 12 C -0.25 -5.30 10.05 -39.29 -0.39 -5.70 16 13 C 0.00 -0.09 9.54 -39.66 -0.38 -0.47 16 14 C -0.78 -17.87 5.05 -38.87 -0.20 -18.06 16 15 S 2.70 57.55 4.97 -107.50 -0.53 57.01 16 16 O -1.00 -22.03 16.20 -57.17 -0.93 -22.96 16 17 O -0.96 -23.81 16.53 -57.17 -0.95 -24.75 16 18 N -1.11 -18.79 4.25 -4.89 -0.02 -18.81 16 19 C 0.17 2.50 2.01 -67.93 -0.14 2.36 16 20 H 0.10 1.54 7.41 -51.93 -0.38 1.16 16 21 C 0.05 0.75 6.62 37.15 0.25 0.99 16 22 O -0.56 -7.59 12.76 -35.23 -0.45 -8.04 16 23 C -0.12 -1.48 2.55 -89.09 -0.23 -1.71 16 24 H 0.10 1.20 7.59 -51.93 -0.39 0.81 16 25 C -0.15 -1.85 6.40 -24.60 -0.16 -2.00 16 26 C 0.05 0.51 7.72 38.34 0.30 0.80 16 27 O -0.38 -5.01 11.52 -35.23 -0.41 -5.42 16 28 C 0.05 0.62 6.95 37.73 0.26 0.88 16 29 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 30 H 0.12 2.99 6.25 -52.49 -0.33 2.66 16 31 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.11 2.18 7.32 -52.49 -0.38 1.79 16 34 H 0.41 6.58 8.52 -34.48 -0.29 6.29 16 35 H 0.07 1.11 7.03 -51.93 -0.37 0.74 16 36 H 0.05 0.52 6.82 -51.93 -0.35 0.16 16 37 H 0.38 3.86 9.12 45.56 0.42 4.28 16 38 H 0.09 1.18 7.87 -51.93 -0.41 0.77 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.94 6.55 -51.93 -0.34 0.60 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -30.81 359.02 -9.48 -40.29 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -4.81 Total: 16.82 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: -2.37 Total: -34.18 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.58 Total: -37.01 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -2.73 Total: -61.17 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 57.55 SS G_CDS: -0.53 Total: 57.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.81 -9.48 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365375173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.088 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds