Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48498 * 109.47229 * 240.00173 * 3 2 1 5 5 H 1.48497 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00151 * 3 2 1 7 7 C 1.39940 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00162 * 169.07947 * 7 2 1 9 9 C 1.41393 * 119.99853 * 349.07235 * 7 2 1 10 10 C 1.40740 * 120.24424 * 330.93883 * 9 7 2 11 11 C 1.37592 * 119.74364 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.25272 * 359.97438 * 11 10 9 13 13 C 1.38610 * 120.49895 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24860 * 359.97438 * 13 12 11 15 15 S 1.76196 * 120.12602 * 180.02562 * 14 13 12 16 16 O 1.42095 * 106.40349 * 359.11142 * 15 14 13 17 17 O 1.42102 * 106.40127 * 132.03294 * 15 14 13 18 18 N 1.65607 * 107.21798 * 245.56708 * 15 14 13 19 19 C 1.46508 * 119.99361 * 67.69552 * 18 15 14 20 20 H 1.08998 * 109.47078 * 22.94366 * 19 18 15 21 21 C 1.52993 * 109.46791 * 262.93834 * 19 18 15 22 22 O 1.42900 * 109.47458 * 296.59602 * 21 19 18 23 23 C 1.52997 * 109.46568 * 142.93977 * 19 18 15 24 24 H 1.09000 * 110.43655 * 61.83006 * 23 19 18 25 25 C 1.54807 * 110.49154 * 299.28152 * 23 19 18 26 26 C 1.55229 * 101.98904 * 220.52396 * 25 23 19 27 27 O 1.44373 * 103.56539 * 36.87672 * 26 25 23 28 28 C 1.43745 * 106.97860 * 320.01507 * 27 26 25 29 29 H 0.97001 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.12398 * 0.04179 * 10 9 7 31 31 H 1.08000 * 119.87525 * 179.72405 * 11 10 9 32 32 H 1.08000 * 119.75103 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.87786 * 180.02562 * 13 12 11 34 34 H 0.96992 * 120.00413 * 247.69720 * 18 15 14 35 35 H 1.08996 * 109.47733 * 56.60025 * 21 19 18 36 36 H 1.09002 * 109.46848 * 176.59963 * 21 19 18 37 37 H 0.96700 * 114.00290 * 180.02562 * 22 21 19 38 38 H 1.09006 * 110.90713 * 338.64292 * 25 23 19 39 39 H 1.08995 * 110.90967 * 102.24729 * 25 23 19 40 40 H 1.09001 * 110.51209 * 278.38037 * 26 25 23 41 41 H 1.08996 * 110.64217 * 155.43903 * 26 25 23 42 42 H 1.09001 * 109.87688 * 267.08778 * 28 27 26 43 43 H 1.09001 * 110.00223 * 146.00955 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0734 -1.2203 -0.1777 9 6 1.3203 -2.4254 0.2310 10 6 0.1604 -2.4419 1.0280 11 6 -0.5004 -3.6287 1.2471 12 6 -0.0281 -4.8053 0.6856 13 6 1.1132 -4.8008 -0.1009 14 6 1.7904 -3.6253 -0.3335 15 16 3.2405 -3.6232 -1.3345 16 8 3.4582 -4.9711 -1.7282 17 8 3.0863 -2.5577 -2.2620 18 7 4.5111 -3.2108 -0.3557 19 6 4.9474 -4.1254 0.7025 20 1 4.6337 -5.1401 0.4579 21 6 4.3188 -3.7036 2.0321 22 8 4.7925 -2.4044 2.3921 23 6 6.4720 -4.0775 0.8212 24 1 6.8010 -3.0758 1.0975 25 6 7.1331 -4.5178 -0.5076 26 6 8.3195 -5.3841 -0.0060 27 8 7.7788 -6.0634 1.1475 28 6 6.9653 -5.1108 1.8526 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2096 -1.5266 1.4657 31 1 -1.3882 -3.6446 1.8620 32 1 -0.5529 -5.7324 0.8632 33 1 1.4720 -5.7230 -0.5336 34 1 4.9665 -2.3640 -0.4830 35 1 3.2339 -3.6793 1.9296 36 1 4.5946 -4.4186 2.8073 37 1 4.4346 -2.0726 3.2270 38 1 6.4436 -5.1125 -1.1068 39 1 7.4894 -3.6545 -1.0695 40 1 9.1601 -4.7518 0.2799 41 1 8.6201 -6.1024 -0.7686 42 1 7.5579 -4.6140 2.6207 43 1 6.1133 -5.6141 2.3097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365375173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -180.403913 kcal Electronic energy + Delta-G solvation = -29575.248772 eV Core-core repulsion = 25517.831632 eV Total energy + Delta-G solvation = -4057.417139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67396 -39.38135 -38.23518 -37.94967 -36.67169 -35.83445 -35.61069 -32.60535 -31.96372 -31.34736 -30.74072 -28.15107 -27.29982 -24.46912 -23.38034 -22.95377 -22.84299 -21.37424 -20.29006 -19.48655 -18.72257 -18.11118 -17.90190 -17.47948 -17.13354 -16.97418 -16.55199 -16.03079 -15.92020 -15.59975 -15.38580 -15.08161 -14.95697 -14.74748 -14.45044 -13.92747 -13.67316 -13.47999 -13.23636 -13.10895 -13.00417 -12.99053 -12.89024 -12.82677 -12.75877 -12.48369 -12.41532 -12.15691 -12.04717 -11.93506 -11.64689 -11.54325 -11.16697 -11.10166 -10.74308 -10.59698 -10.19647 -9.79374 -9.39855 -8.76951 -6.57517 -0.16532 0.55006 0.99698 1.37711 1.48393 1.53624 2.17364 2.31965 2.65920 3.00264 3.06777 3.40622 3.49902 3.60409 3.68062 3.87411 4.03174 4.20148 4.29115 4.30812 4.34454 4.38428 4.52069 4.54263 4.64949 4.73172 4.83759 4.85733 4.89746 4.97685 5.01888 5.03418 5.17499 5.20907 5.31552 5.36903 5.54428 5.73173 5.85316 5.97226 6.02905 6.11591 6.24115 6.50968 6.71561 6.86071 6.99695 8.18401 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.005079 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.246035 B = 5511.790191 C = 6210.254878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.244 1.244 7 C -0.464 4.464 8 H 0.092 0.908 9 C 0.170 3.830 10 C -0.183 4.183 11 C -0.076 4.076 12 C -0.249 4.249 13 C -0.017 4.017 14 C -0.789 4.789 15 S 2.715 3.285 16 O -1.008 7.008 17 O -1.002 7.002 18 N -1.096 6.096 19 C 0.164 3.836 20 H 0.095 0.905 21 C 0.059 3.941 22 O -0.569 6.569 23 C -0.113 4.113 24 H 0.105 0.895 25 C -0.158 4.158 26 C 0.047 3.953 27 O -0.401 6.401 28 C 0.054 3.946 29 H 0.294 0.706 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.420 0.580 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.390 0.610 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 -3.326 6.753 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.167 1.167 7 C -0.492 4.492 8 H 0.110 0.890 9 C 0.166 3.834 10 C -0.203 4.203 11 C -0.095 4.095 12 C -0.270 4.270 13 C -0.037 4.037 14 C -0.884 4.884 15 S 2.811 3.189 16 O -0.999 6.999 17 O -0.992 6.992 18 N -0.854 5.854 19 C 0.056 3.944 20 H 0.113 0.887 21 C -0.021 4.021 22 O -0.376 6.376 23 C -0.133 4.133 24 H 0.124 0.876 25 C -0.196 4.196 26 C -0.029 4.029 27 O -0.321 6.321 28 C -0.023 4.023 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.256 0.744 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.293 -3.818 5.346 13.065 hybrid contribution -0.987 1.427 0.751 1.891 sum 10.305 -2.391 6.098 12.211 Atomic orbital electron populations 1.69815 1.08915 1.31269 1.33383 1.26742 0.95566 1.04669 0.90761 0.85371 0.79174 0.75561 0.80628 1.19075 1.18986 1.16688 1.20061 0.96982 0.91317 1.40873 0.89017 1.17203 0.90672 0.90273 0.85266 1.21557 0.99106 0.97229 1.02416 1.21227 0.97917 0.92980 0.97356 1.20853 1.00599 0.98083 1.07416 1.20549 0.94067 0.95284 0.93766 1.30117 1.26777 1.00990 1.30485 1.00478 0.73450 0.71610 0.73334 1.93427 1.86349 1.38024 1.82064 1.93492 1.86673 1.57047 1.61987 1.55230 1.49637 1.30960 1.49586 1.20992 0.95064 0.92434 0.85861 0.88745 1.22700 0.97568 0.85741 0.96072 1.86371 1.71964 1.33260 1.45968 1.22666 0.93047 1.01755 0.95823 0.87648 1.23315 0.97960 1.00980 0.97360 1.23724 0.95559 0.95934 0.87692 1.88832 1.66215 1.36674 1.40355 1.23296 0.95029 0.89807 0.94213 0.89525 0.86900 0.86207 0.85722 0.86244 0.74405 0.94430 0.90620 0.76160 0.91708 0.88851 0.90441 0.88122 0.90395 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.84 10.87 21.82 0.24 -39.60 16 2 C 0.04 1.92 5.25 85.26 0.45 2.37 16 3 Si 0.97 36.44 29.57 68.60 2.03 38.47 16 4 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 7 C -0.46 -22.92 7.61 23.46 0.18 -22.74 16 8 H 0.09 4.29 5.74 -2.91 -0.02 4.27 16 9 C 0.17 8.45 5.38 -21.29 -0.11 8.33 16 10 C -0.18 -8.82 8.66 22.73 0.20 -8.62 16 11 C -0.08 -3.23 10.02 22.22 0.22 -3.00 16 12 C -0.25 -10.16 10.05 22.46 0.23 -9.93 16 13 C -0.02 -0.73 9.54 22.22 0.21 -0.52 16 14 C -0.79 -36.63 5.05 22.73 0.11 -36.52 16 15 S 2.71 117.23 4.97 -56.49 -0.28 116.95 16 16 O -1.01 -44.71 16.20 -128.00 -2.07 -46.79 16 17 O -1.00 -50.57 16.53 -128.00 -2.12 -52.68 16 18 N -1.10 -36.97 4.25 -169.39 -0.72 -37.69 16 19 C 0.16 4.64 2.01 44.99 0.09 4.73 16 20 H 0.09 2.82 7.41 -2.39 -0.02 2.80 16 21 C 0.06 1.57 6.62 71.98 0.48 2.05 16 22 O -0.57 -14.53 12.76 -148.98 -1.90 -16.44 16 23 C -0.11 -2.57 2.55 -9.81 -0.03 -2.60 16 24 H 0.11 2.30 7.59 -2.39 -0.02 2.29 16 25 C -0.16 -3.58 6.40 31.98 0.20 -3.37 16 26 C 0.05 0.92 7.72 72.75 0.56 1.48 16 27 O -0.40 -9.74 11.52 -148.98 -1.72 -11.45 16 28 C 0.05 1.12 6.95 72.35 0.50 1.62 16 29 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 30 H 0.11 5.60 6.25 -2.91 -0.02 5.58 16 31 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 33 H 0.12 4.78 7.32 -2.91 -0.02 4.76 16 34 H 0.42 13.24 8.52 -96.75 -0.82 12.42 16 35 H 0.04 1.24 7.03 -2.39 -0.02 1.22 16 36 H 0.08 1.55 6.82 -2.39 -0.02 1.54 16 37 H 0.39 7.40 9.12 -74.06 -0.68 6.73 16 38 H 0.06 1.74 7.87 -2.38 -0.02 1.73 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.76 6.55 -2.39 -0.02 1.74 16 Total: -1.00 -66.25 359.02 -3.68 -69.93 By element: Atomic # 1 Polarization: 46.45 SS G_CDS: -0.43 Total: 46.02 kcal Atomic # 6 Polarization: -70.01 SS G_CDS: 3.29 Total: -66.72 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -0.48 Total: -77.29 kcal Atomic # 8 Polarization: -119.55 SS G_CDS: -7.81 Total: -127.36 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Atomic # 16 Polarization: 117.23 SS G_CDS: -0.28 Total: 116.95 kcal Total: -66.25 -3.68 -69.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365375173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.474 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds