Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00530 * 2 1 4 4 H 1.48497 * 109.47329 * 270.00387 * 3 2 1 5 5 H 1.48507 * 109.47016 * 30.00002 * 3 2 1 6 6 H 1.48500 * 109.47398 * 149.99880 * 3 2 1 7 7 C 1.39949 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99903 * 165.46092 * 7 2 1 9 9 C 1.41395 * 119.99933 * 345.45005 * 7 2 1 10 10 C 1.40730 * 120.24430 * 334.72784 * 9 7 2 11 11 C 1.37603 * 119.74296 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24910 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.49937 * 359.96860 * 12 11 10 14 14 S 1.76208 * 119.87415 * 180.02562 * 13 12 11 15 15 O 1.42102 * 106.40185 * 336.46234 * 14 13 12 16 16 O 1.42100 * 106.39908 * 203.54358 * 14 13 12 17 17 N 1.65599 * 107.21630 * 90.00326 * 14 13 12 18 18 C 1.46501 * 120.00108 * 64.99844 * 17 14 13 19 19 H 1.08999 * 109.47101 * 335.00180 * 18 17 14 20 20 C 1.53005 * 109.46696 * 94.99700 * 18 17 14 21 21 O 1.42906 * 109.46683 * 65.08067 * 20 18 17 22 22 C 1.52994 * 109.46943 * 214.99697 * 18 17 14 23 23 H 1.09003 * 110.45962 * 296.98030 * 22 18 17 24 24 C 1.54505 * 110.51136 * 59.58679 * 22 18 17 25 25 C 1.54481 * 104.06370 * 118.63987 * 24 22 18 26 26 O 1.44430 * 104.80039 * 23.97938 * 25 24 22 27 27 C 1.44423 * 105.27687 * 319.48886 * 26 25 24 28 28 C 1.37637 * 120.25242 * 0.30028 * 13 12 11 29 29 H 0.97007 * 119.99558 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.12970 * 0.04082 * 10 9 7 31 31 H 1.07995 * 119.87366 * 179.97438 * 11 10 9 32 32 H 1.07994 * 119.74692 * 179.97438 * 12 11 10 33 33 H 0.97006 * 119.99600 * 244.99842 * 17 14 13 34 34 H 1.08999 * 109.46848 * 185.07468 * 20 18 17 35 35 H 1.08993 * 109.47547 * 305.07900 * 20 18 17 36 36 H 0.96702 * 113.99399 * 179.97438 * 21 20 18 37 37 H 1.08996 * 110.51531 * 237.28153 * 24 22 18 38 38 H 1.09002 * 110.51082 * 359.86388 * 24 22 18 39 39 H 1.08999 * 110.37578 * 142.80928 * 25 24 22 40 40 H 1.09001 * 110.37516 * 265.04287 * 25 24 22 41 41 H 1.09005 * 110.36934 * 281.67915 * 27 26 25 42 42 H 1.08994 * 110.37166 * 159.34344 * 27 26 25 43 43 H 1.07999 * 120.13093 * 179.69790 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0619 -1.2270 -0.2353 9 6 1.3348 -2.4170 0.3065 10 6 0.1735 -2.3976 1.1013 11 6 -0.4730 -3.5764 1.3942 12 6 0.0159 -4.7802 0.9100 13 6 1.1587 -4.8112 0.1263 14 16 1.7652 -6.3502 -0.4809 15 8 1.2673 -7.3516 0.3957 16 8 3.1498 -6.1620 -0.7393 17 7 1.0472 -6.6149 -1.9494 18 6 1.3303 -5.7211 -3.0751 19 1 1.6379 -4.7463 -2.6965 20 6 2.4537 -6.3147 -3.9275 21 8 2.0074 -7.5363 -4.5198 22 6 0.0712 -5.5624 -3.9295 23 1 -0.2202 -6.5203 -4.3602 24 6 -1.0833 -4.9735 -3.0882 25 6 -1.4159 -3.6381 -3.7900 26 8 -0.9581 -3.8114 -5.1488 27 6 0.2994 -4.5132 -5.0401 28 6 1.8249 -3.6450 -0.1748 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2089 -1.4611 1.4795 31 1 -1.3641 -3.5640 2.0042 32 1 -0.4977 -5.7006 1.1452 33 1 0.4391 -7.3620 -2.0643 34 1 2.7261 -5.6088 -4.7121 35 1 3.3218 -6.5117 -3.2986 36 1 2.6700 -7.9688 -5.0757 37 1 -1.9463 -5.6391 -3.1050 38 1 -0.7576 -4.7977 -2.0629 39 1 -2.4907 -3.4573 -3.7718 40 1 -0.8852 -2.8152 -3.3111 41 1 1.0947 -3.8247 -4.7541 42 1 0.5423 -5.0046 -5.9822 43 1 2.7179 -3.6719 -0.7816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413315702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -181.673793 kcal Electronic energy + Delta-G solvation = -29193.240388 eV Core-core repulsion = 25135.768182 eV Total energy + Delta-G solvation = -4057.472206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73292 -39.44327 -38.45276 -38.06267 -36.91370 -35.95775 -35.64443 -32.60344 -31.89843 -31.58292 -30.73036 -28.26412 -27.32792 -24.47608 -23.65747 -23.11247 -22.78848 -21.40721 -20.63016 -19.60637 -18.67002 -18.09993 -17.70656 -17.55813 -17.29116 -16.95071 -16.59043 -16.39060 -16.15444 -15.85712 -15.30264 -15.24141 -15.03217 -14.80300 -14.30878 -13.94104 -13.78762 -13.70366 -13.38038 -13.19040 -13.12899 -13.05494 -13.01812 -12.94298 -12.80486 -12.64004 -12.50759 -12.22354 -12.15476 -11.88134 -11.55712 -11.54129 -11.31730 -11.15066 -10.81646 -10.75311 -10.45872 -9.83601 -9.53168 -8.69682 -6.44352 -0.51509 0.41049 0.85347 1.38313 1.44586 1.51632 2.08789 2.17704 2.57261 2.77556 3.01617 3.36672 3.44345 3.53742 3.58949 3.74225 3.89830 4.16167 4.22097 4.25474 4.30018 4.33251 4.45005 4.48782 4.57054 4.77688 4.82374 4.84598 4.86030 4.89261 4.92031 5.03513 5.08255 5.14850 5.22228 5.33068 5.41653 5.56900 5.82489 5.90929 5.96127 6.09639 6.13245 6.54391 6.82186 6.85996 6.97721 8.26354 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.004967 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.719051 B = 5636.377156 C = 6801.277343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.040 3.960 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.493 4.493 8 H 0.078 0.922 9 C 0.066 3.934 10 C -0.136 4.136 11 C -0.123 4.123 12 C -0.144 4.144 13 C -0.638 4.638 14 S 2.714 3.286 15 O -0.991 6.991 16 O -0.989 6.989 17 N -1.091 6.091 18 C 0.159 3.841 19 H 0.088 0.912 20 C 0.060 3.940 21 O -0.573 6.573 22 C -0.107 4.107 23 H 0.111 0.889 24 C -0.153 4.153 25 C 0.043 3.957 26 O -0.393 6.393 27 C 0.048 3.952 28 C -0.141 4.141 29 H 0.290 0.710 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.428 0.572 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -7.814 -9.416 12.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.097 0.903 9 C 0.063 3.937 10 C -0.156 4.156 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.727 4.727 14 S 2.807 3.193 15 O -0.982 6.982 16 O -0.979 6.979 17 N -0.852 5.852 18 C 0.052 3.948 19 H 0.106 0.894 20 C -0.020 4.020 21 O -0.381 6.381 22 C -0.127 4.127 23 H 0.129 0.871 24 C -0.191 4.191 25 C -0.033 4.033 26 O -0.312 6.312 27 C -0.029 4.029 28 C -0.162 4.162 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.265 0.735 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.514 -7.862 -8.862 11.858 hybrid contribution 0.207 1.211 0.242 1.252 sum -0.307 -6.651 -8.620 10.892 Atomic orbital electron populations 1.69788 1.08686 1.30726 1.35494 1.26643 0.95536 1.04188 0.91208 0.85263 0.79145 0.76221 0.79570 1.18660 1.19082 1.18491 1.19833 0.97333 0.91747 1.43340 0.90349 1.17995 0.92662 0.92903 0.90178 1.21697 0.97899 0.97492 0.98487 1.21115 0.99829 0.92699 1.00575 1.20412 0.96316 0.97976 1.01777 1.30179 1.08730 1.18663 1.15118 1.00938 0.73076 0.72964 0.72282 1.93497 1.81524 1.58227 1.64907 1.93500 1.32347 1.86932 1.85121 1.55154 1.64500 1.40740 1.24828 1.21026 0.95377 0.92202 0.86224 0.89447 1.22673 0.95379 0.87469 0.96479 1.86394 1.45082 1.37846 1.68790 1.22629 0.93557 1.01273 0.95235 0.87056 1.23024 0.99322 0.96764 0.99980 1.23411 1.00787 0.97091 0.82043 1.89067 1.37659 1.78218 1.26217 1.23608 0.86531 0.92791 0.99966 1.20832 1.00517 0.91911 1.02926 0.89900 0.86769 0.85903 0.85467 0.73500 0.90382 0.92987 0.75403 0.89108 0.91122 0.88254 0.93992 0.92278 0.86601 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.76 10.81 21.83 0.24 -39.52 16 2 C 0.04 1.87 5.21 85.26 0.44 2.32 16 3 Si 0.98 36.21 29.58 68.60 2.03 38.24 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.49 -24.97 9.07 23.46 0.21 -24.75 16 8 H 0.08 3.85 7.89 -2.91 -0.02 3.83 16 9 C 0.07 3.32 5.58 -21.29 -0.12 3.20 16 10 C -0.14 -6.63 8.69 22.73 0.20 -6.44 16 11 C -0.12 -5.27 10.02 22.22 0.22 -5.05 16 12 C -0.14 -5.88 9.53 22.46 0.21 -5.66 16 13 C -0.64 -26.22 5.81 22.22 0.13 -26.09 16 14 S 2.71 95.60 5.65 -56.49 -0.32 95.28 16 15 O -0.99 -38.32 17.27 -128.00 -2.21 -40.53 16 16 O -0.99 -38.84 16.47 -128.00 -2.11 -40.95 16 17 N -1.09 -29.25 4.81 -169.39 -0.81 -30.06 16 18 C 0.16 4.03 1.87 44.99 0.08 4.11 16 19 H 0.09 2.54 7.17 -2.39 -0.02 2.52 16 20 C 0.06 1.24 6.64 71.98 0.48 1.72 16 21 O -0.57 -9.98 12.70 -148.98 -1.89 -11.87 16 22 C -0.11 -2.46 2.62 -9.78 -0.03 -2.48 16 23 H 0.11 2.31 7.51 -2.39 -0.02 2.29 16 24 C -0.15 -4.01 6.47 31.61 0.20 -3.81 16 25 C 0.04 1.25 7.63 72.49 0.55 1.81 16 26 O -0.39 -11.36 11.65 -148.98 -1.74 -13.10 16 27 C 0.05 1.12 6.38 72.49 0.46 1.58 16 28 C -0.14 -6.46 8.65 22.73 0.20 -6.26 16 29 H 0.29 12.74 8.30 -92.70 -0.77 11.97 16 30 H 0.11 5.79 6.09 -2.91 -0.02 5.77 16 31 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 32 H 0.13 4.60 7.60 -2.91 -0.02 4.58 16 33 H 0.43 9.62 8.84 -96.74 -0.85 8.76 16 34 H 0.08 1.27 7.63 -2.39 -0.02 1.25 16 35 H 0.05 1.23 7.59 -2.39 -0.02 1.21 16 36 H 0.40 3.45 9.12 -74.06 -0.68 2.78 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.15 7.45 -2.39 -0.02 2.13 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.40 7.82 -2.38 -0.02 1.39 16 42 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -64.62 365.63 -4.03 -68.65 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.47 Total: 39.67 kcal Atomic # 6 Polarization: -69.06 SS G_CDS: 3.25 Total: -65.81 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.58 Total: -69.58 kcal Atomic # 8 Polarization: -98.50 SS G_CDS: -7.95 Total: -106.44 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 95.60 SS G_CDS: -0.32 Total: 95.28 kcal Total: -64.62 -4.03 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413315702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.022 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds