Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99585 * 2 1 4 4 H 1.48500 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46783 * 299.99606 * 3 2 1 6 6 H 1.48494 * 109.47333 * 59.99696 * 3 2 1 7 7 C 1.39946 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99917 * 164.59691 * 7 2 1 9 9 C 1.41392 * 119.99684 * 344.60740 * 7 2 1 10 10 C 1.40735 * 120.24918 * 335.34776 * 9 7 2 11 11 C 1.37587 * 119.75080 * 179.97438 * 10 9 7 12 12 C 1.38668 * 120.24796 * 359.75264 * 11 10 9 13 13 C 1.38609 * 120.49762 * 0.50831 * 12 11 10 14 14 S 1.76200 * 119.87442 * 179.76609 * 13 12 11 15 15 O 1.42107 * 106.40173 * 156.18404 * 14 13 12 16 16 O 1.42104 * 106.40195 * 23.26610 * 14 13 12 17 17 N 1.65602 * 107.21763 * 269.72198 * 14 13 12 18 18 C 1.46504 * 119.99412 * 65.00156 * 17 14 13 19 19 H 1.08993 * 109.47470 * 25.00262 * 18 17 14 20 20 C 1.52996 * 109.47071 * 264.99497 * 18 17 14 21 21 O 1.42899 * 109.47273 * 294.90917 * 20 18 17 22 22 C 1.53002 * 109.46625 * 144.99825 * 18 17 14 23 23 H 1.09003 * 110.80508 * 59.77365 * 22 18 17 24 24 C 1.54807 * 110.94204 * 296.11539 * 22 18 17 25 25 C 1.54093 * 104.19134 * 220.90886 * 24 22 18 26 26 O 1.43886 * 107.37513 * 358.10563 * 25 24 22 27 27 C 1.44379 * 106.90240 * 26.26980 * 26 25 24 28 28 C 1.37641 * 120.24935 * 359.48872 * 13 12 11 29 29 H 0.96997 * 120.00230 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.11938 * 359.96491 * 10 9 7 31 31 H 1.08005 * 119.88152 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.74928 * 180.25350 * 12 11 10 33 33 H 0.96995 * 120.00510 * 244.99592 * 17 14 13 34 34 H 1.09005 * 109.46980 * 54.90915 * 20 18 17 35 35 H 1.09001 * 109.47493 * 174.90474 * 20 18 17 36 36 H 0.96702 * 113.99723 * 179.97438 * 21 20 18 37 37 H 1.09006 * 110.48625 * 339.58978 * 24 22 18 38 38 H 1.09003 * 110.48747 * 102.23276 * 24 22 18 39 39 H 1.09004 * 109.87617 * 117.39206 * 25 24 22 40 40 H 1.08996 * 109.87968 * 238.54418 * 25 24 22 41 41 H 1.08996 * 110.62096 * 201.58312 * 27 26 25 42 42 H 1.08995 * 110.61825 * 78.73911 * 27 26 25 43 43 H 1.08004 * 120.12888 * 180.27627 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8833 2.3966 1.2124 7 6 2.0081 -1.2119 0.0005 8 1 3.0590 -1.2287 -0.2479 9 6 1.3392 -2.4143 0.3261 10 6 0.1806 -2.3873 1.1246 11 6 -0.4624 -3.5635 1.4347 12 6 0.0241 -4.7719 0.9594 13 6 1.1673 -4.8110 0.1766 14 16 1.7745 -6.3562 -0.4135 15 8 2.5438 -6.0686 -1.5732 16 8 0.6678 -7.2476 -0.4163 17 7 2.8354 -6.9313 0.7206 18 6 2.3545 -7.2936 2.0562 19 1 1.2961 -7.5484 2.0046 20 6 2.5485 -6.1102 3.0063 21 8 3.9448 -5.8517 3.1665 22 6 3.1444 -8.4976 2.5733 23 1 4.2083 -8.2674 2.6298 24 6 2.8949 -9.7439 1.6896 25 6 2.7721 -10.9031 2.6974 26 8 2.9831 -10.3548 4.0108 27 6 2.6053 -8.9627 3.9502 28 6 1.8268 -3.6468 -0.1462 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2021 -1.4468 1.4927 31 1 -1.3515 -3.5452 2.0477 32 1 -0.4894 -5.6899 1.2044 33 1 3.7751 -7.0285 0.5006 34 1 2.0609 -5.2278 2.5919 35 1 2.1092 -6.3465 3.9755 36 1 4.1426 -5.1121 3.7572 37 1 1.9704 -9.6311 1.1232 38 1 3.7371 -9.9100 1.0178 39 1 1.7762 -11.3422 2.6376 40 1 3.5266 -11.6605 2.4849 41 1 3.0772 -8.4014 4.7566 42 1 1.5214 -8.8569 3.9936 43 1 2.7149 -3.6791 -0.7599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413315705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -182.762757 kcal Electronic energy + Delta-G solvation = -28556.735393 eV Core-core repulsion = 24499.215967 eV Total energy + Delta-G solvation = -4057.519427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.66328 -39.46852 -38.41371 -38.10168 -36.92963 -35.91084 -35.66808 -32.66236 -31.90881 -31.58221 -30.72587 -28.24339 -27.33708 -24.48068 -23.63167 -22.86264 -22.80000 -21.50332 -20.62602 -19.70294 -18.65502 -18.11164 -17.77458 -17.53367 -17.27453 -16.82335 -16.69395 -16.42360 -15.94092 -15.83347 -15.33065 -15.11689 -15.07206 -14.75961 -14.31181 -14.23255 -13.76721 -13.68610 -13.28212 -13.25819 -13.13588 -13.08140 -13.06319 -12.91533 -12.82437 -12.59727 -12.43945 -12.19746 -12.16090 -11.88901 -11.55666 -11.53530 -11.35877 -11.17654 -10.78891 -10.60494 -10.43968 -9.81162 -9.53603 -8.71388 -6.45754 -0.51561 0.41533 0.84696 1.37446 1.44193 1.52043 2.08434 2.17863 2.55307 2.77595 2.99497 3.32949 3.46573 3.52566 3.63896 3.73959 3.93823 4.15611 4.22308 4.26630 4.31816 4.36092 4.45738 4.51027 4.56905 4.82080 4.84400 4.86754 4.88677 4.92077 4.93028 5.04768 5.09605 5.14231 5.21531 5.35737 5.41762 5.57353 5.90234 5.92762 5.95476 6.08577 6.12491 6.53992 6.80900 6.85464 6.92700 8.25547 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.003293 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.399934 B = 8500.260588 C = 8943.779798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.142 4.142 13 C -0.635 4.635 14 S 2.713 3.287 15 O -1.000 7.000 16 O -0.983 6.983 17 N -1.093 6.093 18 C 0.161 3.839 19 H 0.109 0.891 20 C 0.050 3.950 21 O -0.575 6.575 22 C -0.110 4.110 23 H 0.099 0.901 24 C -0.159 4.159 25 C 0.044 3.956 26 O -0.398 6.398 27 C 0.053 3.947 28 C -0.142 4.142 29 H 0.291 0.709 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.426 0.574 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.392 0.608 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -12.244 9.099 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.061 3.939 10 C -0.157 4.157 11 C -0.140 4.140 12 C -0.163 4.163 13 C -0.724 4.724 14 S 2.807 3.193 15 O -0.990 6.990 16 O -0.973 6.973 17 N -0.854 5.854 18 C 0.054 3.946 19 H 0.127 0.873 20 C -0.030 4.030 21 O -0.382 6.382 22 C -0.130 4.130 23 H 0.117 0.883 24 C -0.197 4.197 25 C -0.032 4.032 26 O -0.317 6.317 27 C -0.024 4.024 28 C -0.163 4.163 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.663 -13.127 8.095 15.852 hybrid contribution 0.310 2.251 0.135 2.276 sum 3.973 -10.876 8.230 14.206 Atomic orbital electron populations 1.69805 1.08866 1.30785 1.35762 1.26733 0.95562 1.04498 0.91142 0.85129 0.79380 0.76071 0.79006 1.18223 1.19369 1.18490 1.19889 0.97676 0.92044 1.42961 0.90485 1.18003 0.92860 0.92748 0.90296 1.21698 0.97738 0.97735 0.98518 1.21139 0.99690 0.92552 1.00606 1.20449 0.96076 0.98323 1.01430 1.30151 1.08473 1.18439 1.15336 1.00920 0.72690 0.73349 0.72383 1.93505 1.71508 1.86063 1.47929 1.93500 1.53533 1.63600 1.86661 1.55180 1.23447 1.81000 1.25727 1.21056 0.99244 0.93687 0.80597 0.87306 1.22840 0.83370 0.97455 0.99309 1.86368 1.23134 1.56728 1.72012 1.22788 1.01779 0.93021 0.95409 0.88279 1.23085 1.03783 0.93989 0.98807 1.23302 1.02080 0.96364 0.81480 1.88875 1.87765 1.24240 1.30864 1.23679 1.00199 0.81659 0.96861 1.20770 1.01182 0.92334 1.01975 0.89834 0.86747 0.85465 0.84846 0.73763 0.93742 0.90209 0.75867 0.90440 0.89514 0.91587 0.88787 0.87651 0.90897 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.13 10.82 21.83 0.24 -40.89 16 2 C 0.04 1.71 5.19 85.26 0.44 2.15 16 3 Si 0.98 36.65 29.59 68.60 2.03 38.68 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 7 C -0.50 -25.74 9.07 23.46 0.21 -25.53 16 8 H 0.08 3.90 7.89 -2.91 -0.02 3.87 16 9 C 0.06 3.29 5.58 -21.29 -0.12 3.17 16 10 C -0.14 -6.62 8.69 22.73 0.20 -6.42 16 11 C -0.12 -4.97 10.02 22.22 0.22 -4.75 16 12 C -0.14 -5.51 8.73 22.46 0.20 -5.31 16 13 C -0.63 -26.01 4.93 22.22 0.11 -25.90 16 14 S 2.71 95.54 5.72 -56.49 -0.32 95.21 16 15 O -1.00 -41.67 17.27 -128.00 -2.21 -43.88 16 16 O -0.98 -36.29 16.60 -128.00 -2.12 -38.41 16 17 N -1.09 -28.53 5.18 -169.39 -0.88 -29.40 16 18 C 0.16 3.55 2.11 44.99 0.09 3.65 16 19 H 0.11 2.32 7.50 -2.39 -0.02 2.30 16 20 C 0.05 1.08 6.61 71.98 0.48 1.56 16 21 O -0.58 -12.22 12.77 -148.98 -1.90 -14.12 16 22 C -0.11 -2.05 2.55 -9.49 -0.02 -2.08 16 23 H 0.10 1.96 7.64 -2.39 -0.02 1.94 16 24 C -0.16 -2.86 6.36 31.58 0.20 -2.66 16 25 C 0.04 0.75 7.70 72.35 0.56 1.31 16 26 O -0.40 -8.35 11.53 -148.98 -1.72 -10.07 16 27 C 0.05 0.92 6.28 72.67 0.46 1.38 16 28 C -0.14 -6.73 9.26 22.73 0.21 -6.52 16 29 H 0.29 13.00 8.30 -92.71 -0.77 12.24 16 30 H 0.11 5.75 6.08 -2.91 -0.02 5.73 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.13 4.39 7.59 -2.91 -0.02 4.37 16 33 H 0.43 9.89 8.84 -96.75 -0.85 9.03 16 34 H 0.04 1.22 6.19 -2.38 -0.01 1.20 16 35 H 0.08 1.29 7.58 -2.39 -0.02 1.27 16 36 H 0.39 5.90 9.12 -74.06 -0.68 5.22 16 37 H 0.08 1.52 7.86 -2.38 -0.02 1.50 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16 43 H 0.10 4.92 7.60 -2.91 -0.02 4.89 16 Total: -1.00 -66.68 364.72 -4.13 -70.81 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.47 Total: 38.03 kcal Atomic # 6 Polarization: -69.18 SS G_CDS: 3.23 Total: -65.95 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -0.64 Total: -70.30 kcal Atomic # 8 Polarization: -98.53 SS G_CDS: -7.96 Total: -106.49 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.32 Total: 95.21 kcal Total: -66.68 -4.13 -70.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413315705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.952 kcal (2) G-P(sol) polarization free energy of solvation -66.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds