Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38237 * 119.99613 * 269.72405 * 10 9 7 12 12 C 1.38237 * 119.99768 * 179.78720 * 11 10 9 13 13 C 1.38232 * 119.99839 * 0.44105 * 12 11 10 14 14 S 1.76206 * 119.99980 * 179.83328 * 13 12 11 15 15 O 1.42103 * 106.39898 * 23.51737 * 14 13 12 16 16 O 1.42093 * 106.40491 * 156.43781 * 14 13 12 17 17 N 1.65597 * 107.21883 * 269.98033 * 14 13 12 18 18 C 1.47426 * 125.64845 * 90.02295 * 17 14 13 19 19 C 1.54909 * 104.83231 * 204.09357 * 18 17 14 20 20 H 1.08996 * 111.00666 * 81.10205 * 19 18 17 21 21 O 1.42902 * 111.00559 * 204.91864 * 19 18 17 22 22 C 1.55161 * 101.58023 * 322.98937 * 19 18 17 23 23 H 1.08999 * 110.71934 * 276.96316 * 22 19 18 24 24 C 1.53007 * 110.71934 * 153.86587 * 22 19 18 25 25 O 1.42896 * 109.46846 * 175.00197 * 24 22 19 26 26 C 1.47018 * 125.64838 * 269.71414 * 17 14 13 27 27 C 1.38236 * 120.00279 * 359.81168 * 13 12 11 28 28 C 1.38228 * 119.99847 * 359.97438 * 27 13 12 29 29 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 31 31 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 32 32 H 1.07998 * 120.00100 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.99755 * 180.27437 * 12 11 10 34 34 H 1.09010 * 110.36877 * 322.92925 * 18 17 14 35 35 H 1.08994 * 110.37102 * 85.14326 * 18 17 14 36 36 H 0.96700 * 113.99972 * 298.54186 * 21 19 18 37 37 H 1.09000 * 109.46785 * 295.00034 * 24 22 19 38 38 H 1.09001 * 109.47133 * 54.99901 * 24 22 19 39 39 H 0.96698 * 113.99650 * 180.02562 * 25 24 22 40 40 H 1.08998 * 109.88340 * 298.39336 * 26 17 14 41 41 H 1.09011 * 109.88025 * 59.56166 * 26 17 14 42 42 H 1.07992 * 119.99773 * 179.97438 * 27 13 12 43 43 H 1.07995 * 120.00359 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6759 -4.1731 -1.1986 12 6 3.5776 -5.2210 -1.1984 13 6 4.0265 -5.7462 -0.0012 14 16 5.1725 -7.0847 -0.0009 15 8 5.8471 -7.0355 -1.2506 16 8 5.8468 -7.0355 1.2488 17 7 4.2897 -8.4858 -0.0010 18 6 3.8323 -9.2131 -1.1990 19 6 2.5995 -10.0224 -0.7250 20 1 1.7073 -9.3968 -0.7001 21 8 2.3931 -11.1713 -1.5494 22 6 3.0302 -10.4358 0.7072 23 1 3.6586 -11.3259 0.6791 24 6 1.8057 -10.6677 1.5949 25 8 2.2273 -11.1581 2.8692 26 6 3.8378 -9.2139 1.1936 27 6 3.5769 -5.2211 1.1959 28 6 2.6787 -4.1704 1.1958 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5575 0.8880 31 1 0.6246 -2.5563 -0.8919 32 1 2.3220 -3.7654 -2.1339 33 1 3.9291 -5.6309 -2.1336 34 1 3.5468 -8.5113 -1.9829 35 1 4.6135 -9.8835 -1.5572 36 1 2.2177 -10.9632 -2.4773 37 1 1.2692 -9.7281 1.7265 38 1 1.1485 -11.3985 1.1236 39 1 1.5014 -11.3283 3.4848 40 1 4.6990 -9.5438 1.7746 41 1 3.2022 -8.5700 1.8018 42 1 3.9274 -5.6318 2.1312 43 1 2.3277 -3.7599 2.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414285169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -150.049025 kcal Electronic energy + Delta-G solvation = -27609.237298 eV Core-core repulsion = 23553.136445 eV Total energy + Delta-G solvation = -4056.100853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.69332 -38.85306 -37.23350 -36.91858 -35.96910 -35.82447 -33.71984 -31.64346 -31.58322 -30.63378 -28.81080 -27.47353 -25.65213 -23.77075 -22.73405 -22.39338 -20.89929 -20.84955 -19.17158 -18.27077 -17.72843 -17.59538 -17.32175 -16.48665 -16.28580 -15.54255 -15.16007 -15.12183 -14.68701 -14.45604 -14.40719 -14.15473 -14.00161 -13.65077 -13.29743 -13.14338 -12.90114 -12.87664 -12.42669 -12.27182 -12.09232 -12.00836 -11.82642 -11.75214 -11.53207 -11.48414 -11.11565 -10.97459 -10.96437 -10.59124 -10.53676 -10.49204 -10.32560 -9.79109 -9.69323 -9.25950 -8.64648 -8.57722 -8.43083 -6.20751 -4.25799 0.34028 1.27506 1.73916 2.87793 3.20866 3.29066 3.34362 3.51410 3.70692 3.80462 3.90715 4.08386 4.34597 4.39611 4.47400 4.60259 4.84800 4.86533 4.98259 5.08554 5.11301 5.17460 5.18136 5.20678 5.34263 5.46465 5.53917 5.67027 5.69368 5.77444 5.83485 5.85917 6.10082 6.19379 6.27603 6.46925 6.78463 6.85530 7.16197 7.24516 7.26463 7.38012 7.54051 7.74587 8.09306 8.79280 9.39531 10.89297 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002769 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.798375 B =10110.500113 C =10599.943059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.145 4.145 12 C -0.024 4.024 13 C -0.705 4.705 14 S 2.711 3.289 15 O -0.958 6.958 16 O -0.956 6.956 17 N -1.012 6.012 18 C 0.093 3.907 19 C 0.098 3.902 20 H 0.081 0.919 21 O -0.556 6.556 22 C -0.088 4.088 23 H 0.102 0.898 24 C 0.085 3.915 25 O -0.572 6.572 26 C 0.130 3.870 27 C -0.023 4.023 28 C -0.145 4.145 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.385 0.615 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.382 0.618 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -22.517 -0.320 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.002 3.998 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.043 4.043 13 C -0.794 4.794 14 S 2.806 3.194 15 O -0.949 6.949 16 O -0.947 6.947 17 N -0.850 5.850 18 C -0.033 4.033 19 C 0.038 3.962 20 H 0.099 0.901 21 O -0.361 6.361 22 C -0.108 4.108 23 H 0.121 0.879 24 C 0.007 3.993 25 O -0.378 6.378 26 C 0.005 3.995 27 C -0.042 4.042 28 C -0.164 4.164 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.230 0.770 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.346 -22.538 -0.035 22.785 hybrid contribution -0.969 1.739 -0.317 2.016 sum 2.377 -20.798 -0.352 20.937 Atomic orbital electron populations 1.69959 1.06072 1.27046 1.49889 1.25005 0.94939 0.99428 0.94778 0.86420 0.80159 0.83056 0.77773 1.19554 1.20778 1.20774 1.21007 0.93152 0.89437 1.51952 0.92221 1.18547 0.92636 0.89550 0.99037 1.21129 0.92170 0.91972 0.92047 1.21247 0.99097 0.97185 0.98903 1.20760 0.93246 0.94705 0.95637 1.30389 1.25353 1.23735 0.99966 1.01288 0.73168 0.71674 0.73312 1.93557 1.70738 1.86368 1.44214 1.93559 1.70740 1.86283 1.44088 1.58645 1.73646 1.39938 1.12813 1.22663 0.96949 0.96083 0.87635 1.22943 0.96479 0.86733 0.90083 0.90130 1.86511 1.94056 1.31636 1.23908 1.22165 0.97081 0.99357 0.92214 0.87932 1.22152 0.95027 0.98214 0.83919 1.86471 1.37971 1.88168 1.25161 1.21757 0.98895 0.92218 0.86623 1.20779 0.93129 0.94576 0.95722 1.21252 0.99085 0.97129 0.98925 0.92665 0.94700 0.94710 0.85316 0.85363 0.89918 0.90053 0.76726 0.92963 0.92648 0.77049 0.90034 0.90832 0.85263 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.91 9.09 -34.44 -0.31 -14.22 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 11 C -0.15 -2.63 9.70 -39.58 -0.38 -3.02 16 12 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 13 C -0.70 -11.03 5.97 -39.58 -0.24 -11.27 16 14 S 2.71 38.79 5.94 -107.50 -0.64 38.15 16 15 O -0.96 -15.56 16.87 -57.17 -0.96 -16.52 16 16 O -0.96 -15.87 16.86 -57.17 -0.96 -16.83 16 17 N -1.01 -11.11 3.70 -111.41 -0.41 -11.52 16 18 C 0.09 0.80 6.71 -2.53 -0.02 0.78 16 19 C 0.10 0.73 3.88 -24.58 -0.10 0.63 16 20 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 21 O -0.56 -3.81 13.47 -35.23 -0.47 -4.29 16 22 C -0.09 -0.75 2.94 -88.77 -0.26 -1.01 16 23 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 24 C 0.09 0.62 6.39 37.16 0.24 0.86 16 25 O -0.57 -4.49 13.60 -35.23 -0.48 -4.96 16 26 C 0.13 1.29 6.54 -3.06 -0.02 1.27 16 27 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 28 C -0.14 -2.65 9.70 -39.59 -0.38 -3.03 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 34 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.38 1.05 9.11 45.56 0.42 1.47 16 37 H 0.05 0.34 7.94 -51.93 -0.41 -0.07 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 1.33 9.12 45.56 0.42 1.74 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.69 7.69 -51.92 -0.40 0.29 16 42 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 43 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -35.00 376.37 -10.09 -45.09 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.54 Total: 1.93 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -3.00 Total: -28.13 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.32 Total: -36.05 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -2.88 Total: -42.61 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 38.79 SS G_CDS: -0.64 Total: 38.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.00 -10.09 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414285169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.959 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds