Wall clock time and date at job start Sat Apr 11 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38237 * 119.99613 * 269.72405 * 10 9 7 12 12 C 1.38237 * 119.99768 * 179.78720 * 11 10 9 13 13 C 1.38232 * 119.99839 * 0.44105 * 12 11 10 14 14 S 1.76206 * 119.99980 * 179.83328 * 13 12 11 15 15 O 1.42103 * 106.39898 * 23.51737 * 14 13 12 16 16 O 1.42093 * 106.40491 * 156.43781 * 14 13 12 17 17 N 1.65597 * 107.21883 * 269.98033 * 14 13 12 18 18 C 1.47426 * 125.64845 * 90.02295 * 17 14 13 19 19 C 1.54909 * 104.83231 * 204.09357 * 18 17 14 20 20 H 1.08996 * 111.00666 * 81.10205 * 19 18 17 21 21 O 1.42902 * 111.00559 * 204.91864 * 19 18 17 22 22 C 1.55161 * 101.58023 * 322.98937 * 19 18 17 23 23 H 1.08999 * 110.71934 * 276.96316 * 22 19 18 24 24 C 1.53007 * 110.71934 * 153.86587 * 22 19 18 25 25 O 1.42896 * 109.46846 * 175.00197 * 24 22 19 26 26 C 1.47018 * 125.64838 * 269.71414 * 17 14 13 27 27 C 1.38236 * 120.00279 * 359.81168 * 13 12 11 28 28 C 1.38228 * 119.99847 * 359.97438 * 27 13 12 29 29 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 31 31 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 32 32 H 1.07998 * 120.00100 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.99755 * 180.27437 * 12 11 10 34 34 H 1.09010 * 110.36877 * 322.92925 * 18 17 14 35 35 H 1.08994 * 110.37102 * 85.14326 * 18 17 14 36 36 H 0.96700 * 113.99972 * 298.54186 * 21 19 18 37 37 H 1.09000 * 109.46785 * 295.00034 * 24 22 19 38 38 H 1.09001 * 109.47133 * 54.99901 * 24 22 19 39 39 H 0.96698 * 113.99650 * 180.02562 * 25 24 22 40 40 H 1.08998 * 109.88340 * 298.39336 * 26 17 14 41 41 H 1.09011 * 109.88025 * 59.56166 * 26 17 14 42 42 H 1.07992 * 119.99773 * 179.97438 * 27 13 12 43 43 H 1.07995 * 120.00359 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6759 -4.1731 -1.1986 12 6 3.5776 -5.2210 -1.1984 13 6 4.0265 -5.7462 -0.0012 14 16 5.1725 -7.0847 -0.0009 15 8 5.8471 -7.0355 -1.2506 16 8 5.8468 -7.0355 1.2488 17 7 4.2897 -8.4858 -0.0010 18 6 3.8323 -9.2131 -1.1990 19 6 2.5995 -10.0224 -0.7250 20 1 1.7073 -9.3968 -0.7001 21 8 2.3931 -11.1713 -1.5494 22 6 3.0302 -10.4358 0.7072 23 1 3.6586 -11.3259 0.6791 24 6 1.8057 -10.6677 1.5949 25 8 2.2273 -11.1581 2.8692 26 6 3.8378 -9.2139 1.1936 27 6 3.5769 -5.2211 1.1959 28 6 2.6787 -4.1704 1.1958 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5575 0.8880 31 1 0.6246 -2.5563 -0.8919 32 1 2.3220 -3.7654 -2.1339 33 1 3.9291 -5.6309 -2.1336 34 1 3.5468 -8.5113 -1.9829 35 1 4.6135 -9.8835 -1.5572 36 1 2.2177 -10.9632 -2.4773 37 1 1.2692 -9.7281 1.7265 38 1 1.1485 -11.3985 1.1236 39 1 1.5014 -11.3283 3.4848 40 1 4.6990 -9.5438 1.7746 41 1 3.2022 -8.5700 1.8018 42 1 3.9274 -5.6318 2.1312 43 1 2.3277 -3.7599 2.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414285169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:20 Heat of formation + Delta-G solvation = -178.881464 kcal Electronic energy + Delta-G solvation = -27610.487566 eV Core-core repulsion = 23553.136445 eV Total energy + Delta-G solvation = -4057.351121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34753 -40.25566 -38.45476 -37.46867 -37.06321 -36.58961 -35.61052 -33.33922 -32.31569 -31.99030 -29.49169 -29.26164 -26.33355 -25.60060 -23.76249 -23.42091 -22.43565 -21.49719 -20.23727 -19.21360 -18.63406 -18.49507 -18.45474 -18.04211 -17.22674 -16.86953 -16.49880 -16.01081 -15.90718 -15.72794 -15.43107 -15.09281 -14.86648 -14.63890 -14.50283 -14.48152 -13.95601 -13.93158 -13.53783 -13.42721 -13.41783 -13.34372 -13.28415 -13.23843 -12.69802 -12.68191 -12.55542 -12.22195 -12.06731 -12.05306 -11.70458 -11.65335 -11.46160 -11.07890 -10.85710 -10.66597 -10.15038 -9.98998 -9.94693 -8.28304 -6.40782 -0.80378 -0.09832 0.37248 1.36573 1.38469 1.50801 1.84544 2.33873 2.53548 2.73912 2.99190 3.01587 3.04612 3.23631 3.58303 3.84678 3.86113 3.94471 4.04800 4.13901 4.22000 4.27972 4.37014 4.43301 4.44826 4.45735 4.59301 4.76283 4.78694 4.82876 4.88503 4.89091 5.00527 5.05694 5.17158 5.22511 5.25372 5.30236 5.31073 5.66367 5.84404 5.89903 6.08663 6.71223 6.86437 6.93360 7.28523 8.81888 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.002769 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.798375 B =10110.500113 C =10599.943059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.002 4.002 11 C -0.153 4.153 12 C -0.018 4.018 13 C -0.701 4.701 14 S 2.735 3.265 15 O -0.975 6.975 16 O -0.979 6.979 17 N -1.007 6.007 18 C 0.082 3.918 19 C 0.109 3.891 20 H 0.093 0.907 21 O -0.565 6.565 22 C -0.089 4.089 23 H 0.093 0.907 24 C 0.087 3.913 25 O -0.592 6.592 26 C 0.123 3.877 27 C -0.020 4.020 28 C -0.154 4.154 29 H 0.267 0.733 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.403 0.597 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -23.751 -0.747 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.011 3.989 10 C -0.002 4.002 11 C -0.171 4.171 12 C -0.037 4.037 13 C -0.788 4.788 14 S 2.828 3.172 15 O -0.965 6.965 16 O -0.969 6.969 17 N -0.847 5.847 18 C -0.043 4.043 19 C 0.048 3.952 20 H 0.110 0.890 21 O -0.374 6.374 22 C -0.109 4.109 23 H 0.111 0.889 24 C 0.009 3.991 25 O -0.401 6.401 26 C -0.001 4.001 27 C -0.039 4.039 28 C -0.172 4.172 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.170 0.830 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.046 -23.762 -0.471 24.109 hybrid contribution -1.176 1.943 -0.187 2.279 sum 2.870 -21.819 -0.659 22.017 Atomic orbital electron populations 1.70058 1.07468 1.28076 1.50776 1.25841 0.95761 1.02891 0.94365 0.85421 0.78818 0.78894 0.78085 1.19285 1.20016 1.20085 1.21317 0.93049 0.91062 1.51701 0.92883 1.18271 0.92968 0.90646 0.96993 1.20835 0.93206 0.92240 0.93921 1.21317 0.99695 0.97890 0.98244 1.21025 0.92063 0.93568 0.97029 1.30785 1.24423 1.23926 0.99685 1.00493 0.72740 0.71630 0.72313 1.93534 1.71342 1.86797 1.44855 1.93529 1.71541 1.86772 1.45076 1.58332 1.73436 1.38623 1.14338 1.22962 0.97758 0.96505 0.87046 1.22823 0.96214 0.86726 0.89422 0.88952 1.86482 1.93993 1.31502 1.25396 1.22167 0.97293 0.98089 0.93333 0.88877 1.22152 0.94462 0.98856 0.83675 1.86426 1.39572 1.88272 1.25786 1.21918 0.99072 0.92877 0.86274 1.20999 0.92180 0.93612 0.97083 1.21297 0.99753 0.97882 0.98303 0.92368 0.96780 0.96647 0.84974 0.82520 0.88426 0.89651 0.74607 0.92152 0.91830 0.75048 0.90673 0.90210 0.82993 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.05 2.42 5.10 29.10 0.15 2.56 16 10 C 0.00 -0.07 5.07 -19.87 -0.10 -0.17 16 11 C -0.15 -5.47 9.70 22.27 0.22 -5.25 16 12 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 13 C -0.70 -20.58 5.97 22.27 0.13 -20.44 16 14 S 2.74 72.67 5.94 -56.49 -0.34 72.33 16 15 O -0.97 -29.44 16.87 -128.00 -2.16 -31.60 16 16 O -0.98 -30.84 16.86 -128.00 -2.16 -33.00 16 17 N -1.01 -19.90 3.70 -506.40 -1.87 -21.77 16 18 C 0.08 1.21 6.71 86.85 0.58 1.79 16 19 C 0.11 1.33 3.88 31.99 0.12 1.45 16 20 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 21 O -0.57 -6.24 13.47 -148.98 -2.01 -8.25 16 22 C -0.09 -1.33 2.94 -9.60 -0.03 -1.35 16 23 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 24 C 0.09 1.08 6.39 71.98 0.46 1.54 16 25 O -0.59 -8.32 13.60 -148.98 -2.03 -10.34 16 26 C 0.12 2.23 6.54 86.73 0.57 2.79 16 27 C -0.02 -0.61 9.52 22.27 0.21 -0.39 16 28 C -0.15 -5.61 9.70 22.27 0.22 -5.39 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.01 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.16 3.77 7.62 -2.91 -0.02 3.74 16 34 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.40 1.04 9.11 -74.06 -0.67 0.37 16 37 H 0.06 0.65 7.94 -2.39 -0.02 0.64 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.40 2.12 9.12 -74.06 -0.68 1.45 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.34 7.69 -2.38 -0.02 1.32 16 42 H 0.15 3.97 7.62 -2.91 -0.02 3.95 16 43 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -74.83 376.37 -5.12 -79.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.31 Total: 11.86 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 3.44 Total: -51.27 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.59 Total: -74.94 kcal Atomic # 8 Polarization: -74.84 SS G_CDS: -8.35 Total: -83.19 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.34 Total: 72.33 kcal Total: -74.83 -5.12 -79.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414285169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.939 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds